Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1234400 Malus domestica HOM05D003955 ORTHO05D004684 0.0e+00 1276.5 657 100.0
MD06G1229500 Malus domestica HOM05D003955 ORTHO05D004684 0.0e+00 1122.8 611 93.9
Prupe.5G230600 Prunus persica HOM05D003955 ORTHO05D004684 1.8e-311 1072.0 608 90.0
Thecc.03G050300 Theobroma cacao HOM05D003955 ORTHO05D004684 1.2e-291 1006.1 609 81.0
RcHm_v2.0_Chr7g0178701 Rosa chinensis HOM05D003955 ORTHO05D004684 1.6e-291 1005.7 609 84.2
Cpa.g.sc3.440 Carica papaya HOM05D003955 ORTHO05D004684 7.9e-291 1003.4 609 82.3
Gorai.007G004500 Gossypium raimondii HOM05D003955 ORTHO05D004684 8.7e-290 1000.0 609 80.5
FAN18G0775 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.9e-289 998.8 609 84.1
Gohir.D11G003500 Gossypium hirsutum HOM05D003955 ORTHO05D004684 1.9e-289 998.8 609 80.3
Gohir.A11G004000 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.5e-289 998.4 609 80.5
CsaV3_1G004220 Cucumis sativus L. HOM05D003955 ORTHO05D004684 2.8e-288 995.0 610 78.5
FvH4_5g17110 Fragaria vesca HOM05D003955 ORTHO05D004684 4.8e-288 994.2 609 83.9
CANSAT80G2537 Cannabis sativa HOM05D003955 ORTHO05D004684 1.8e-287 992.3 609 79.8
MELO3C017347.2 Cucumis melo HOM05D003955 ORTHO05D004684 4.0e-287 991.1 610 78.4
TWI15G0606 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 4.0e-287 991.1 605 77.2
GSVIVG01008399001 Vitis vinifera HOM05D003955 ORTHO05D004684 4.0e-287 991.1 609 81.8
FAN04G3226 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.2e-286 989.6 620 82.4
FAN13G1787 Fragaria x ananassa HOM05D003955 ORTHO05D004684 4.5e-286 987.6 620 82.6
CiPaw.15G139700 Carya illinoinensis HOM05D003955 ORTHO05D004684 1.3e-285 986.1 607 81.5
ClCG06G014440 Citrullus lanatus HOM05D003955 ORTHO05D004684 1.7e-285 985.7 602 78.2
FAN08G2535 Fragaria x ananassa HOM05D003955 ORTHO05D004684 1.1e-284 983.0 618 82.2
TAR622G0688 Trochodendron aralioides HOM05D003955 ORTHO05D004684 1.1e-284 983.0 608 78.9
Sed0001638 Sechium edule HOM05D003955 ORTHO05D004684 3.2e-284 981.5 610 77.5
Cfa019689 Carpinus fangiana HOM05D003955 ORTHO05D004684 4.2e-284 981.1 608 81.1
VMungo0251G3447 Vigna mungo HOM05D003955 ORTHO05D004684 5.5e-284 980.7 609 78.8
QL10p027883 Quercus lobata HOM05D003955 ORTHO05D004684 2.1e-283 978.8 607 80.9
Migut.D01456 Erythranthe guttata HOM05D003955 ORTHO05D004684 6.0e-283 977.2 608 79.1
Sed0014282 Sechium edule HOM05D003955 ORTHO05D004684 1.3e-282 976.1 609 76.8
TAR374G0009 Trochodendron aralioides HOM05D003955 ORTHO05D004684 2.3e-282 975.3 608 81.6
Glyma.08G051900 Glycine max HOM05D003955 ORTHO05D004684 3.0e-282 974.9 609 78.5
COL.COLO4_22318 Corchorus olitorius HOM05D003955 ORTHO05D004684 6.7e-282 973.8 636 76.6
Glyma.05G243900 Glycine max HOM05D003955 ORTHO05D004684 1.5e-281 972.6 611 77.9
Hma1.2p1_0669F.1_g200270 Hydrangea macrophylla HOM05D003955 ORTHO05D004684 4.3e-281 971.1 620 80.5
Ciclev10007782m.g Citrus clementina HOM05D003955 ORTHO05D004684 7.4e-281 970.3 609 79.0
Nitab4.5_0001158g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 7.4e-281 970.3 647 75.7
SGA_v2.0_scaffold25G10972 Striga asiatica HOM05D003955 ORTHO05D004684 3.7e-280 968.0 608 79.4
TWI81G0555 Tripterygium wilfordii HOM05D003955 ORTHO05D004684 3.7e-280 968.0 594 76.8
MSTRG.9290 Avicennia marina HOM05D003955 ORTHO05D004684 4.8e-280 967.6 607 75.5
vmacro16423 Vaccinium macrocarpon HOM05D003955 ORTHO05D004684 8.2e-280 966.8 609 80.6
Lalb_Chr05g0221841 Lupinus albus HOM05D003955 ORTHO05D004684 1.8e-279 965.7 609 77.7
Lj4g0027787 Lotus japonicus HOM05D003955 ORTHO05D004684 3.1e-279 964.9 608 77.6
Nitab4.5_0001644g0090 Nicotiana tabacum HOM05D003955 ORTHO05D004684 3.1e-279 964.9 630 76.7
Manes.06G008300 Manihot esculenta HOM05D003955 ORTHO05D004684 1.5e-278 962.6 609 80.8
Haze_18797 Corylus avellana HOM05D003955 ORTHO05D004684 3.4e-278 961.4 611 80.0
Phvul.002G327600 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 4.5e-278 961.1 609 79.1
THA.LOC104820357 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 5.9e-278 960.7 606 77.7
Dinv05158 Davidia involucrata HOM05D003955 ORTHO05D004684 7.6e-278 960.3 609 77.3
PGSC0003DMG400005655 Solanum tuberosum HOM05D003955 ORTHO05D004684 6.5e-277 957.2 608 78.0
PGR083G2578 Punica granatum HOM05D003955 ORTHO05D004684 8.5e-277 956.8 611 77.3
Sabra12G0034600 Salix brachista HOM05D003955 ORTHO05D004684 8.5e-277 956.8 621 76.7
Sopen03g037980 Solanum pennellii HOM05D003955 ORTHO05D004684 5.5e-276 954.1 607 77.6
Rhsim12G0139700 Rhododendron simsii HOM05D003955 ORTHO05D004684 1.2e-275 953.0 609 79.5
Psat7g000120 Pisum sativum HOM05D003955 ORTHO05D004684 4.6e-275 951.0 607 76.6
Solyc03g119090.3 Solanum lycopersicum HOM05D003955 ORTHO05D004684 7.9e-275 950.3 607 77.4
PSO782G1387 Papaver somniferum HOM05D003955 ORTHO05D004684 3.0e-274 948.3 608 76.8
Ca_17215_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 8.7e-274 946.8 604 77.6
Ca_17217_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 8.7e-274 946.8 604 77.6
Medtr8g106820 Medicago truncatula HOM05D003955 ORTHO05D004684 1.1e-273 946.4 606 77.7
CSS0005322 Camellia sinensis var. sinensis HOM05D003955 ORTHO05D004684 1.5e-273 946.0 608 77.6
Potri.015G041200 Populus trichocarpa HOM05D003955 ORTHO05D004684 1.9e-273 945.7 608 79.1
CARHR093380 Cardamine hirsuta HOM05D003955 ORTHO05D004684 5.7e-273 944.1 609 76.5
Potri.012G049200 Populus trichocarpa HOM05D003955 ORTHO05D004684 2.2e-272 942.2 608 78.5
Sp3g16180 Schrenkiella parvula HOM05D003955 ORTHO05D004684 2.8e-272 941.8 609 76.8
Thhalv10020321m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 4.8e-272 941.0 609 76.8
Aa31LG8G4920 Aethionema arabicum HOM05D003955 ORTHO05D004684 6.3e-272 940.6 608 75.8
Peaxi162Scf00683g00157 Petunia axillaris HOM05D003955 ORTHO05D004684 8.2e-272 940.3 607 78.3
PSO063G1948 Papaver somniferum HOM05D003955 ORTHO05D004684 1.8e-271 939.1 608 76.5
DCAR_014770 Daucus carota HOM05D003955 ORTHO05D004684 1.2e-270 936.4 606 74.9
Eucgr.K02263 Eucalyptus grandis HOM05D003955 ORTHO05D004684 2.0e-270 935.6 610 77.9
Lj2A556T29 Lonicera japonica HOM05D003955 ORTHO05D004684 1.0e-269 933.3 611 76.9
HanXRQChr10g0314661 Helianthus annuus HOM05D003955 ORTHO05D004684 1.7e-269 932.6 607 74.6
Atru.chr11.420 Acer truncatum HOM05D003955 ORTHO05D004684 3.8e-269 931.4 608 75.3
Aqoxy3G04013 Aquilegia oxysepala HOM05D003955 ORTHO05D004684 3.8e-269 931.4 608 77.1
Lsat_1_v5_gn_5_91461 Lactuca sativa HOM05D003955 ORTHO05D004684 5.0e-269 931.0 609 75.5
Sabra15G0055900 Salix brachista HOM05D003955 ORTHO05D004684 5.0e-269 931.0 659 73.9
Sabra15G0063600 Salix brachista HOM05D003955 ORTHO05D004684 1.1e-268 929.9 614 78.3
Carub.0003s1778 Capsella rubella HOM05D003955 ORTHO05D004684 2.1e-267 925.6 609 75.5
Dinv26502 Davidia involucrata HOM05D003955 ORTHO05D004684 2.7e-267 925.2 603 78.6
DCAR_023230 Daucus carota HOM05D003955 ORTHO05D004684 4.6e-267 924.5 608 73.5
AL3G31220 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 2.0e-265 919.1 609 75.4
AT3G18060 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 4.4e-265 917.9 609 74.9
AUR62014196 Chenopodium quinoa HOM05D003955 ORTHO05D004684 1.3e-264 916.4 607 71.7
COL.COLO4_20464 Corchorus olitorius HOM05D003955 ORTHO05D004684 2.2e-264 915.6 607 71.7
Manes.15G126700 Manihot esculenta HOM05D003955 ORTHO05D004684 2.8e-264 915.2 607 74.6
AUR62041238 Chenopodium quinoa HOM05D003955 ORTHO05D004684 3.1e-263 911.8 607 73.3
BolC5t33552H Brassica oleracea HOM05D003955 ORTHO05D004684 4.1e-263 911.4 608 74.5
C05p48110 Brassica napus HOM05D003955 ORTHO05D004684 6.9e-263 910.6 608 74.7
Ciclev10014635m.g Citrus clementina HOM05D003955 ORTHO05D004684 9.1e-263 910.2 608 73.5
ECA234G1883 Erigeron canadensis HOM05D003955 ORTHO05D004684 1.5e-262 909.4 591 75.5
Lj5g0018825 Lotus japonicus HOM05D003955 ORTHO05D004684 4.5e-262 907.9 604 74.2
Sc11g0004100 Simmondsia chinensis HOM05D003955 ORTHO05D004684 4.5e-262 907.9 608 74.5
A05p31710 Brassica napus HOM05D003955 ORTHO05D004684 7.7e-262 907.1 608 74.3
BraA05t22004Z Brassica rapa HOM05D003955 ORTHO05D004684 7.7e-262 907.1 608 74.3
Gorai.002G180400 Gossypium raimondii HOM05D003955 ORTHO05D004684 2.9e-261 905.2 607 70.0
ATR0686G116 Amborella trichopoda HOM05D003955 ORTHO05D004684 2.5e-260 902.1 610 73.1
arahy.Tifrunner.gnm1.ann1.I5E1T8 Arachis hypogaea HOM05D003955 ORTHO05D004684 2.5e-260 902.1 609 72.1
Oeu061232.2 Olea europaea HOM05D003955 ORTHO05D004684 4.2e-260 901.4 686 65.5
CDE04G0774 Ceratophyllum demersum HOM05D003955 ORTHO05D004684 2.3e-258 895.6 609 74.1
Medtr1g107560 Medicago truncatula HOM05D003955 ORTHO05D004684 3.9e-258 894.8 607 69.0
Glyma.20G126400 Glycine max HOM05D003955 ORTHO05D004684 5.2e-258 894.4 608 71.9
Lj6A27G8 Lonicera japonica HOM05D003955 ORTHO05D004684 1.5e-257 892.9 694 68.0
arahy.Tifrunner.gnm1.ann1.MW1RK6 Arachis hypogaea HOM05D003955 ORTHO05D004684 2.0e-257 892.5 626 70.1
unitig_899.g15402 Utricularia gibba HOM05D003955 ORTHO05D004684 3.3e-257 891.7 602 73.1
Cpa.g.sc211.2 Carica papaya HOM05D003955 ORTHO05D004684 1.4e-255 886.3 608 72.7
TPR.G13862 Trifolium pratense HOM05D003955 ORTHO05D004684 9.1e-255 883.6 607 70.5
VMungo0720G1874 Vigna mungo HOM05D003955 ORTHO05D004684 9.1e-255 883.6 608 72.7
Phvul.007G038100 Phaseolus vulgaris HOM05D003955 ORTHO05D004684 1.5e-252 876.3 609 71.8
Psat6g220280 Pisum sativum HOM05D003955 ORTHO05D004684 1.9e-252 875.9 607 70.3
Hund24990 Selenicereus undatus HOM05D003955 ORTHO05D004684 9.4e-252 873.6 680 63.8
Zm00001eb334960 Zea mays HOM05D003955 ORTHO05D004684 9.4e-252 873.6 605 69.9
Os01g0125800 Oryza sativa ssp. japonica HOM05D003955 ORTHO05D004684 6.7e-250 867.5 609 68.3
Sp2g12780 Schrenkiella parvula HOM05D003955 ORTHO05D004684 6.7e-250 867.5 611 72.7
EL10Ac6g14239 Beta vulgaris HOM05D003955 ORTHO05D004684 2.6e-249 865.5 592 71.5
Zm00001eb125700 Zea mays HOM05D003955 ORTHO05D004684 9.7e-249 863.6 609 68.6
Carub.0005s0030 Capsella rubella HOM05D003955 ORTHO05D004684 1.3e-248 863.2 611 70.7
Thhalv10000821m.g Eutrema salsugineum HOM05D003955 ORTHO05D004684 4.8e-248 861.3 611 73.0
AL5G10290 Arabidopsis lyrata HOM05D003955 ORTHO05D004684 6.3e-248 860.9 611 71.0
Nn4g24112 Nelumbo nucifera HOM05D003955 ORTHO05D004684 3.1e-247 858.6 563 78.0
BcaC04g21593 Brassica carinata HOM05D003955 ORTHO05D004684 1.3e-245 853.2 611 70.2
C09p30050 Brassica napus HOM05D003955 ORTHO05D004684 1.3e-245 853.2 616 70.0
BolC9t55869H Brassica oleracea HOM05D003955 ORTHO05D004684 1.3e-245 853.2 616 70.0
Aa31LG2G8590 Aethionema arabicum HOM05D003955 ORTHO05D004684 5.0e-245 851.3 643 67.7
CARHR143850 Cardamine hirsuta HOM05D003955 ORTHO05D004684 6.5e-245 850.9 611 69.9
A09p23310 Brassica napus HOM05D003955 ORTHO05D004684 1.5e-244 849.7 616 69.6
BraA09t37932Z Brassica rapa HOM05D003955 ORTHO05D004684 3.2e-244 848.6 616 69.5
AT2G01330 Arabidopsis thaliana HOM05D003955 ORTHO05D004684 2.3e-242 842.4 611 69.9
THA.LOC104823875 Tarenaya hassleriana HOM05D003955 ORTHO05D004684 6.8e-242 840.9 609 69.6
Ah.03g138590 Amaranthus hybridus HOM05D003955 ORTHO05D004684 2.0e-241 839.3 608 69.4
BcaB07g30749 Brassica carinata HOM05D003955 ORTHO05D004684 2.0e-241 839.3 611 69.9
Actinidia18907 Actinidia chinensis HOM05D003955 ORTHO05D004684 2.3e-234 815.8 608 67.8
Gohir.D01G099700 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.1e-227 792.7 521 74.7
Gohir.A01G153300 Gossypium hirsutum HOM05D003955 ORTHO05D004684 2.3e-226 789.3 521 74.3
Hund20686 Selenicereus undatus HOM05D003955 ORTHO05D004684 6.2e-203 711.4 478 73.0
TPR.G12969 Trifolium pratense HOM05D003955 ORTHO05D004684 1.8e-202 709.9 471 78.3
Pp3c3_9960 Physcomitrium patens HOM05D003955 ORTHO05D004684 3.3e-196 689.1 604 57.0
Mapoly0025s0096 Marchantia polymorpha HOM05D003955 ORTHO05D004684 7.6e-193 677.9 610 53.3
Actinidia35113 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.3e-179 634.0 413 77.5
Cc04_g06570 Coffea canephora HOM05D003955 ORTHO05D004684 7.6e-177 624.8 389 81.0
Thecc.02G279800 Theobroma cacao HOM05D003955 ORTHO05D004684 2.9e-176 622.9 429 73.0
SMO298G0047 Selaginella moellendorffii HOM05D003955 ORTHO05D004684 5.6e-172 608.6 610 50.3
AagrBONN_evm.TU.Sc2ySwM_340.157 Anthoceros agrestis HOM05D003955 ORTHO05D004684 3.5e-166 589.3 609 52.7
Lalb_Chr06g0165551 Lupinus albus HOM05D003955 ORTHO05D004684 7.2e-159 565.1 427 68.1
HPP92_000152 Vanilla planifolia HOM05D003955 ORTHO05D004684 2.1e-142 510.4 478 57.1
Oeu031790.1 Olea europaea HOM05D003955 ORTHO05D004684 1.5e-127 461.1 353 63.5
Atru.chr9.1765 Acer truncatum HOM05D003955 ORTHO05D004684 1.6e-126 457.6 283 76.3
BolC5t33521H Brassica oleracea HOM05D003955 ORTHO05D004684 7.0e-122 442.2 324 66.7
SEGI_26510 Sequoiadendron giganteum HOM05D003955 ORTHO05D004684 6.5e-120 435.6 350 61.1
CBR_g51409 Chara braunii HOM05D003955 ORTHO05D004684 7.2e-119 432.2 486 51.6
MCO02G121 Micromonas commoda HOM05D003955 ORTHO05D004684 1.5e-103 381.3 647 36.8
Cc04_g06580 Coffea canephora HOM05D003955 ORTHO05D004684 2.1e-94 350.9 222 78.4
PRCOL_00004882 Prasinoderma coloniale HOM05D003955 ORTHO05D004684 1.4e-93 348.2 622 39.1
Lalb_Chr06g0165541 Lupinus albus HOM05D003955 ORTHO05D004684 1.9e-90 337.8 182 84.6
Haze_27019 Corylus avellana HOM05D003955 ORTHO05D004684 1.7e-83 314.7 494 38.3
Zm00001eb337090 Zea mays HOM05D003955 ORTHO05D004684 1.7e-67 261.5 166 83.7
Zm00001eb396840 Zea mays HOM05D003955 ORTHO05D004684 6.4e-67 259.6 166 81.9
Zm00001eb287030 Zea mays HOM05D003955 ORTHO05D004684 1.6e-65 255.0 164 83.5
Zm00001eb076360 Zea mays HOM05D003955 ORTHO05D004684 1.0e-64 252.3 164 82.9
Atru.chr9.1764 Acer truncatum HOM05D003955 ORTHO05D004684 5.5e-58 229.9 171 74.9
TPR.G12747 Trifolium pratense HOM05D003955 ORTHO05D004684 1.3e-56 225.3 130 78.5
Hund20688 Selenicereus undatus HOM05D003955 ORTHO05D004684 2.3e-56 224.6 129 82.9
Ca_27465_v3 Cicer arietinum L. HOM05D003955 ORTHO05D004684 5.6e-55 219.9 128 80.5
BcaC05g28709 Brassica carinata HOM05D003955 ORTHO05D004684 2.1e-54 218.0 128 78.1
Oeu031786.1 Olea europaea HOM05D003955 ORTHO05D004684 3.1e-45 187.6 129 73.6
BcaB03g13114 Brassica carinata HOM05D003955 ORTHO05D030800 3.8e-43 180.6 161 55.9
RcHm_v2.0_Chr5g0062751 Rosa chinensis HOM05D003955 ORTHO05D004684 4.1e-37 160.6 101 76.2
Oeu013618.1 Olea europaea HOM05D003955 ORTHO05D004684 1.7e-30 138.7 105 68.6
Atru.chr5.1031 Acer truncatum HOM05D003955 ORTHO05D030800 3.8e-27 127.5 81 71.6
Zm00001eb221950 Zea mays HOM05D003955 ORTHO05D004684 6.5e-27 126.7 95 60.0
BcaB07g32970 Brassica carinata HOM05D003955 ORTHO05D004684 2.1e-25 121.7 166 42.8
Zm00001eb369430 Zea mays HOM05D003955 ORTHO05D004684 1.9e-18 98.6 54 79.6
Actinidia37891 Actinidia chinensis HOM05D003955 ORTHO05D030800 1.0e-16 92.8 221 29.9
RcHm_v2.0_Chr6g0266701 Rosa chinensis HOM05D003955 ORTHO05D004684 4.4e-15 87.4 72 58.3
RcHm_v2.0_Chr6g0295791 Rosa chinensis HOM05D003955 ORTHO05D004684 2.2e-14 85.1 72 56.9
Zm00001eb265330 Zea mays HOM05D003955 ORTHO05D004684 7.0e-13 80.1 61 63.9
Actinidia37893 Actinidia chinensis HOM05D003955 ORTHO05D004684 1.2e-12 79.3 70 57.1
FvH4_5g16561 Fragaria vesca HOM05D020439 ORTHO05D035355 6.1e-09 67.0 39 69.2
Phvul.008G125400 Phaseolus vulgaris HOM05D000836 ORTHO05D000709 6.1e-09 67.0 297 21.9
COL.COLO4_22316 Corchorus olitorius HOM05D003955 ORTHO05D004684 1.8e-08 65.5 49 61.2
TPR.G34692 Trifolium pratense HOM05D000836 ORTHO05D000709 6.8e-08 63.5 221 25.8
Gorai.007G154000 Gossypium raimondii HOM05D000836 ORTHO05D000709 1.2e-07 62.8 298 22.1
Gohir.D06G210166 Gossypium hirsutum HOM05D000836 ORTHO05D000709 3.4e-07 61.2 201 23.4
MD03G1215900 Malus domestica HOM05D002303 ORTHO05D007639 5.7e-07 60.5 226 23.5
Sabra02G0184200 Salix brachista HOM05D000836 ORTHO05D000709 5.7e-07 60.5 299 22.7
Duzib168G0754 Durio zibethinus HOM05D000836 ORTHO05D000709 1.3e-06 59.3 91 34.1
Eucgr.H00801 Eucalyptus grandis HOM05D000836 ORTHO05D000709 1.3e-06 59.3 296 20.6
Aa31LG3G10470 Aethionema arabicum HOM05D002303 ORTHO05D007639 1.7e-06 58.9 174 24.7
Carub.0008s1480 Capsella rubella HOM05D002303 ORTHO05D007639 2.8e-06 58.2 180 27.2
Prupe.4G196900 Prunus persica HOM05D002303 ORTHO05D007639 6.3e-06 57.0 199 24.1


User provided reference genes

Program Settings