Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1218400 Malus domestica HOM05D003829 ORTHO05D004943 0.0e+00 1199.5 596 100.0
MD06G1208000 Malus domestica HOM05D003829 ORTHO05D004943 0.0e+00 1125.2 598 94.0
Prupe.5G212200 Prunus persica HOM05D003829 ORTHO05D004943 7.4e-296 1020.0 596 85.2
Prupe.5G041000 Prunus persica HOM05D003829 ORTHO05D004943 1.3e-295 1019.2 596 84.4
RcHm_v2.0_Chr7g0184111 Rosa chinensis HOM05D003829 ORTHO05D004943 2.8e-279 964.9 613 77.8
FvH4_5g13020 Fragaria vesca HOM05D003829 ORTHO05D004943 9.7e-272 939.9 612 76.1
FAN08G2534 Fragaria x ananassa HOM05D003829 ORTHO05D004943 2.2e-271 938.7 612 76.1
Sed0025371 Sechium edule HOM05D003829 ORTHO05D004943 1.1e-270 936.4 599 77.3
FAN18G1085 Fragaria x ananassa HOM05D003829 ORTHO05D004943 1.8e-270 935.6 612 75.8
FAN13G0156 Fragaria x ananassa HOM05D003829 ORTHO05D004943 3.1e-270 934.9 612 76.0
PGR119G2172 Punica granatum HOM05D003829 ORTHO05D004943 4.5e-269 931.0 604 76.0
Thecc.03G060100 Theobroma cacao HOM05D003829 ORTHO05D004943 3.8e-268 927.9 598 77.8
Eucgr.B02012 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.6e-266 922.5 599 76.8
Hma1.2p1_0744F.1_g211650 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.1e-266 922.2 600 76.2
Atru.chr10.875 Acer truncatum HOM05D003829 ORTHO05D004943 2.7e-266 921.8 600 76.3
GSVIVG01008188001 Vitis vinifera HOM05D003829 ORTHO05D004943 8.0e-266 920.2 600 75.5
ClCG06G015260 Citrullus lanatus HOM05D003829 ORTHO05D004943 3.0e-265 918.3 599 76.3
arahy.Tifrunner.gnm1.ann1.03AHKF Arachis hypogaea HOM05D003829 ORTHO05D004943 5.2e-265 917.5 605 75.5
CsaV3_1G003150 Cucumis sativus L. HOM05D003829 ORTHO05D004943 5.2e-265 917.5 599 76.1
Glyma.17G083700 Glycine max HOM05D003829 ORTHO05D004943 5.2e-265 917.5 604 75.5
arahy.Tifrunner.gnm1.ann1.WM1R7K Arachis hypogaea HOM05D003829 ORTHO05D004943 8.8e-265 916.8 605 75.2
Potri.018G070200 Populus trichocarpa HOM05D003829 ORTHO05D004943 1.5e-264 916.0 602 74.8
Glyma.05G016400 Glycine max HOM05D003829 ORTHO05D004943 2.0e-264 915.6 604 75.0
Gohir.D12G270700 Gossypium hirsutum HOM05D003829 ORTHO05D004943 2.6e-264 915.2 598 76.4
Nn3g17616 Nelumbo nucifera HOM05D003829 ORTHO05D004943 2.6e-264 915.2 598 74.7
Ciclev10014690m.g Citrus clementina HOM05D003829 ORTHO05D004943 1.7e-263 912.5 600 75.3
Gorai.008G291100 Gossypium raimondii HOM05D003829 ORTHO05D004943 1.7e-263 912.5 598 76.3
Phvul.003G180700 Phaseolus vulgaris HOM05D003829 ORTHO05D004943 2.8e-263 911.8 604 75.2
THA.LOC104806554 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 2.8e-263 911.8 599 75.5
THA.LOC104820955 Tarenaya hassleriana HOM05D003829 ORTHO05D004943 3.7e-263 911.4 599 75.3
Gohir.A12G270300 Gossypium hirsutum HOM05D003829 ORTHO05D004943 6.3e-263 910.6 598 75.9
Nn6g34733 Nelumbo nucifera HOM05D003829 ORTHO05D004943 1.1e-262 909.8 597 75.5
Psat4g043920 Pisum sativum HOM05D003829 ORTHO05D004943 1.8e-262 909.1 604 74.2
Actinidia35063 Actinidia chinensis HOM05D003829 ORTHO05D004943 2.4e-262 908.7 600 75.3
Actinidia18960 Actinidia chinensis HOM05D003829 ORTHO05D004943 3.1e-262 908.3 598 74.7
MSTRG.22458 Avicennia marina HOM05D003829 ORTHO05D004943 9.1e-262 906.7 600 74.2
CSS0022273 Camellia sinensis var. sinensis HOM05D003829 ORTHO05D004943 1.2e-261 906.4 600 75.5
Lalb_Chr12g0197451 Lupinus albus HOM05D003829 ORTHO05D004943 4.5e-261 904.4 604 73.7
VMungo1215G2863 Vigna mungo HOM05D003829 ORTHO05D004943 4.5e-261 904.4 604 75.0
Lj4g0017423 Lotus japonicus HOM05D003829 ORTHO05D004943 7.7e-261 903.7 604 74.2
Hund27361 Selenicereus undatus HOM05D003829 ORTHO05D004943 1.0e-260 903.3 622 72.7
Medtr4g112680 Medicago truncatula HOM05D003829 ORTHO05D004943 1.3e-260 902.9 604 74.3
Potri.013G068100 Populus trichocarpa HOM05D003829 ORTHO05D004943 2.9e-260 901.7 603 74.3
TAR622G1091 Trochodendron aralioides HOM05D003829 ORTHO05D004943 2.9e-260 901.7 615 73.7
Cc00_g04570 Coffea canephora HOM05D003829 ORTHO05D004943 3.8e-260 901.4 600 74.2
SGA_v2.0_scaffold116G32207 Striga asiatica HOM05D003829 ORTHO05D004943 3.8e-260 901.4 600 74.3
HanXRQChr03g0078721 Helianthus annuus HOM05D003829 ORTHO05D004943 1.1e-259 899.8 601 74.7
Manes.06G055300 Manihot esculenta HOM05D003829 ORTHO05D004943 9.4e-259 896.7 601 73.5
SGA_v2.0_scaffold127G34045 Striga asiatica HOM05D003829 ORTHO05D004943 4.7e-258 894.4 600 73.7
QL10p021913 Quercus lobata HOM05D003829 ORTHO05D004943 4.0e-257 891.3 604 74.3
CiPaw.04G139300 Carya illinoinensis HOM05D003829 ORTHO05D004943 8.8e-257 890.2 605 73.4
EL10Ac6g14132 Beta vulgaris HOM05D003829 ORTHO05D004943 4.4e-256 887.9 627 71.0
TWI73G0611 Tripterygium wilfordii HOM05D003829 ORTHO05D004943 4.4e-256 887.9 603 74.1
Sp6g28120 Schrenkiella parvula HOM05D003829 ORTHO05D004943 7.5e-256 887.1 601 73.4
AL2G32240 Arabidopsis lyrata HOM05D003829 ORTHO05D004943 1.3e-255 886.3 600 72.8
ECA240G3266 Erigeron canadensis HOM05D003829 ORTHO05D003544 1.1e-254 883.2 601 73.5
HanXRQChr09g0270121 Helianthus annuus HOM05D003829 ORTHO05D004943 7.0e-254 880.6 602 73.3
Carub.0002s1941 Capsella rubella HOM05D003829 ORTHO05D004943 1.6e-253 879.4 600 72.0
Lj4C813G7 Lonicera japonica HOM05D003829 ORTHO05D004943 4.5e-253 877.9 578 75.3
Ah.03g138770 Amaranthus hybridus HOM05D003829 ORTHO05D004943 7.7e-253 877.1 579 74.6
AUR62008644 Chenopodium quinoa HOM05D003829 ORTHO05D004943 1.7e-252 875.9 608 71.4
ATR0789G018 Amborella trichopoda HOM05D003829 ORTHO05D004943 3.8e-252 874.8 601 72.5
AT1G72550 Arabidopsis thaliana HOM05D003829 ORTHO05D004943 4.2e-251 871.3 607 71.2
DCAR_011621 Daucus carota HOM05D003829 ORTHO05D004943 9.4e-251 870.2 601 72.4
AUR62014243 Chenopodium quinoa HOM05D003829 ORTHO05D004943 6.1e-250 867.5 611 70.7
SalBow6G2606 Salvia bowleyana HOM05D003829 ORTHO05D004943 8.0e-250 867.1 600 71.8
A10p23060 Brassica napus HOM05D003829 ORTHO05D004943 3.4e-248 861.7 601 70.9
BraA10t44375Z Brassica rapa HOM05D003829 ORTHO05D004943 3.4e-248 861.7 601 70.9
C09p61050 Brassica napus HOM05D003829 ORTHO05D004943 7.5e-248 860.5 601 70.9
BolC9t58950H Brassica oleracea HOM05D003829 ORTHO05D004943 6.3e-247 857.4 601 70.5
CAN.G282.43 Capsicum annuum HOM05D003829 ORTHO05D004943 1.4e-246 856.3 600 70.5
unitig_0.g846 Utricularia gibba HOM05D003829 ORTHO05D004943 2.4e-246 855.5 599 70.5
Sc12g0007010 Simmondsia chinensis HOM05D003829 ORTHO05D004943 3.1e-246 855.1 601 70.9
Sopen01g003830 Solanum pennellii HOM05D003829 ORTHO05D004943 1.7e-244 849.4 600 70.2
CARHR065490 Cardamine hirsuta HOM05D003829 ORTHO05D004943 8.6e-244 847.0 612 70.8
Cfa021591 Carpinus fangiana HOM05D003829 ORTHO05D004943 5.5e-243 844.3 583 73.9
COL.COLO4_28877 Corchorus olitorius HOM05D003829 ORTHO05D004943 2.1e-242 842.4 628 69.1
Migut.M00517 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.8e-242 842.0 600 69.3
Migut.N03353 Erythranthe guttata HOM05D003829 ORTHO05D004943 1.8e-241 839.3 582 71.0
Sabra13G0059400 Salix brachista HOM05D003829 ORTHO05D004943 2.3e-241 839.0 633 68.4
Migut.O00831 Erythranthe guttata HOM05D003829 ORTHO05D004943 3.0e-241 838.6 600 69.2
Cpa.g.sc271.5 Carica papaya HOM05D003829 ORTHO05D004943 6.8e-241 837.4 597 72.2
unitig_60.g25860 Utricularia gibba HOM05D003829 ORTHO05D004943 4.4e-240 834.7 613 67.9
CDE10G0816 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 1.3e-239 833.2 590 70.2
vmacro21052 Vaccinium macrocarpon HOM05D003829 ORTHO05D004943 1.3e-239 833.2 732 61.1
Aa31LG11G13610 Aethionema arabicum HOM05D003829 ORTHO05D004943 2.4e-238 828.9 636 66.4
Thhalv10007156m.g Eutrema salsugineum HOM05D003829 ORTHO05D004943 3.1e-238 828.6 600 68.5
Solyc01g008310.4 Solanum lycopersicum HOM05D003829 ORTHO05D004943 2.0e-237 825.9 577 71.2
Dinv38617 Davidia involucrata HOM05D003829 ORTHO05D004943 2.7e-237 825.5 579 72.0
Ca_21737_v3 Cicer arietinum L. HOM05D003829 ORTHO05D004943 1.5e-235 819.7 565 72.6
CANSAT80G2907 Cannabis sativa HOM05D003829 ORTHO05D004943 4.3e-235 818.1 526 77.2
Peaxi162Scf00153g00217 Petunia axillaris HOM05D003829 ORTHO05D004943 1.2e-232 810.1 600 68.7
Nitab4.5_0006274g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 7.0e-230 800.8 600 68.2
Duzib084G0834 Durio zibethinus HOM05D003829 ORTHO05D004943 1.2e-229 800.0 598 69.9
Mapoly0013s0023 Marchantia polymorpha HOM05D003829 ORTHO05D004943 1.2e-229 800.0 600 66.5
BcaC04g18917 Brassica carinata HOM05D003829 ORTHO05D004943 8.0e-226 787.3 601 66.2
Os05g0558900 Oryza sativa ssp. japonica HOM05D003829 ORTHO05D004943 2.0e-224 782.7 603 66.3
PSO676G0009 Papaver somniferum HOM05D003829 ORTHO05D004943 2.0e-224 782.7 608 65.3
MELO3C017266.2 Cucumis melo HOM05D003829 ORTHO05D004943 7.5e-224 780.8 523 75.1
SMO351G0192 Selaginella moellendorffii HOM05D003829 ORTHO05D004943 2.9e-223 778.9 596 64.3
CiPaw.15G121900 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.1e-219 766.9 522 73.6
PSO384G2719 Papaver somniferum HOM05D003829 ORTHO05D004943 1.1e-219 766.9 606 64.2
TPR.G23867 Trifolium pratense HOM05D003829 ORTHO05D004943 1.5e-219 766.5 533 72.2
Pp3c22_15340 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.6e-218 763.1 601 62.7
Pp3c19_13120 Physcomitrium patens HOM05D003829 ORTHO05D004943 1.3e-215 753.4 603 62.7
Zm00001eb267900 Zea mays HOM05D003829 ORTHO05D004943 7.3e-211 737.6 601 64.2
Aqoxy1G02793 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.6e-210 736.5 599 63.3
Aqoxy6G02137 Aquilegia oxysepala HOM05D003829 ORTHO05D004943 1.2e-208 730.3 599 62.1
CBR_g49053 Chara braunii HOM05D003829 ORTHO05D004943 1.3e-207 726.9 601 61.1
Medtr5g077610 Medicago truncatula HOM05D003829 ORTHO05D004943 6.4e-207 724.5 604 62.9
CDE10G0520 Ceratophyllum demersum HOM05D003829 ORTHO05D004943 9.2e-206 720.7 530 68.7
COL.COLO4_30269 Corchorus olitorius HOM05D003829 ORTHO05D004943 4.6e-205 718.4 792 52.7
BcaB08g36877 Brassica carinata HOM05D003829 ORTHO05D004943 6.2e-202 708.0 585 62.9
Oeu037756.2 Olea europaea HOM05D003829 ORTHO05D004943 2.3e-196 689.5 493 70.4
Lsat_1_v5_gn_1_11920 Lactuca sativa HOM05D003829 ORTHO05D004943 6.6e-196 688.0 583 61.9
AagrBONN_evm.TU.Sc2ySwM_199.43 Anthoceros agrestis HOM05D003829 ORTHO05D004943 2.4e-193 679.5 517 65.6
Cre13.g603900 Chlamydomonas reinhardtii HOM05D003829 ORTHO05D004943 7.9e-189 664.5 614 56.0
CiPaw.16G081500 Carya illinoinensis HOM05D003829 ORTHO05D004943 1.3e-183 647.1 425 76.7
MCO09G827 Micromonas commoda HOM05D003829 ORTHO05D004943 1.7e-183 646.7 608 55.4
Migut.L00155 Erythranthe guttata HOM05D003829 ORTHO05D004943 7.9e-181 637.9 449 70.2
PSO339G3234 Papaver somniferum HOM05D003829 ORTHO05D004943 1.4e-174 617.1 581 58.2
PRCOL_00001438 Prasinoderma coloniale HOM05D003829 ORTHO05D004943 8.5e-167 591.3 590 51.5
HPP92_013145 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.0e-164 582.8 613 52.4
Atru.chr11.247 Acer truncatum HOM05D003829 ORTHO05D004943 5.0e-159 565.5 505 59.6
Hma1.2p1_0340F.1_g130210 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 1.3e-151 540.8 406 69.7
Rhsim01G0138800 Rhododendron simsii HOM05D003829 ORTHO05D004943 8.5e-151 538.1 794 43.6
Haze_18554 Corylus avellana HOM05D003829 ORTHO05D004943 2.4e-145 520.0 380 71.1
Haze_26625 Corylus avellana HOM05D003829 ORTHO05D004943 2.4e-145 520.0 615 45.5
Rhsim09G0091000 Rhododendron simsii HOM05D003829 ORTHO05D004943 2.4e-145 520.0 415 64.3
Cfa026018 Carpinus fangiana HOM05D003829 ORTHO05D004943 1.5e-142 510.8 597 45.2
HPP92_013144 Vanilla planifolia HOM05D003829 ORTHO05D004943 7.5e-123 445.3 332 66.3
Haze_25314 Corylus avellana HOM05D003829 ORTHO05D004943 7.0e-121 438.7 317 72.2
QL10p029183 Quercus lobata HOM05D003829 ORTHO05D004943 3.2e-113 413.3 259 78.4
AagrBONN_evm.TU.Sc2ySwM_368.2791 Anthoceros agrestis HOM05D003829 ORTHO05D004943 1.6e-104 384.4 420 50.5
HPP92_012745 Vanilla planifolia HOM05D003829 ORTHO05D004943 2.3e-103 380.6 257 72.0
Nitab4.5_0001328g0030 Nicotiana tabacum HOM05D003829 ORTHO05D004943 8.6e-103 378.6 595 39.8
SEGI_10599 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.8e-100 370.9 291 65.3
HPP92_013183 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.1e-97 361.7 459 46.4
SEGI_36904 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.2e-89 333.6 293 60.1
SEGI_15169 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 1.7e-82 311.2 190 78.4
HPP92_013146 Vanilla planifolia HOM05D003829 ORTHO05D004943 1.4e-81 308.1 309 56.0
SEGI_31614 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 9.9e-75 285.4 176 77.8
Nitab4.5_0000069g0100 Nicotiana tabacum HOM05D003829 ORTHO05D004943 2.9e-74 283.9 262 58.4
Nitab4.5_0023629g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.9e-73 281.2 171 80.1
HPP92_013143 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.2e-73 280.4 264 56.8
Nitab4.5_0023875g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 4.6e-72 276.6 176 74.4
Haze_25313 Corylus avellana HOM05D003829 ORTHO05D004943 1.8e-71 274.6 157 83.4
Haze_18553 Corylus avellana HOM05D003829 ORTHO05D004943 3.0e-71 273.9 154 83.8
Nitab4.5_0021995g0010 Nicotiana tabacum HOM05D003829 ORTHO05D004943 1.3e-69 268.5 190 71.6
Migut.L00154 Erythranthe guttata HOM05D003829 ORTHO05D004943 2.5e-65 254.2 153 77.8
C02p08100 Brassica napus HOM05D003829 ORTHO05D004943 6.7e-63 246.1 203 60.6
BcaC03g18463 Brassica carinata HOM05D003829 ORTHO05D004943 3.8e-58 230.3 204 57.8
BolC2t06732H Brassica oleracea HOM05D003829 ORTHO05D004943 6.1e-56 223.0 204 56.9
Duzib205G0197 Durio zibethinus HOM05D003829 ORTHO05D004943 1.8e-55 221.5 469 33.7
Sp5g27630 Schrenkiella parvula HOM05D003829 ORTHO05D004943 6.7e-55 219.5 257 47.5
Eucgr.E02529 Eucalyptus grandis HOM05D003829 ORTHO05D004943 1.8e-52 211.5 130 80.8
SEGI_27435 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 6.9e-52 209.5 142 67.6
Eucgr.B00970 Eucalyptus grandis HOM05D003829 ORTHO05D004943 3.4e-51 207.2 121 80.2
Oeu029991.1 Olea europaea HOM05D003829 ORTHO05D004943 3.3e-46 190.7 116 75.9
BraA03t10079Z Brassica rapa HOM05D000168 ORTHO05D000811 2.2e-42 177.9 120 66.7
A03p07510 Brassica napus HOM05D003829 ORTHO05D004943 3.8e-42 177.2 120 67.5
SEGI_39885 Sequoiadendron giganteum HOM05D003829 ORTHO05D004943 3.2e-41 174.1 120 66.7
C03p08720 Brassica napus HOM05D003829 ORTHO05D004943 7.9e-40 169.5 120 66.7
BolC3t13370H Brassica oleracea HOM05D000168 ORTHO05D000811 1.8e-39 168.3 120 65.8
Glyma.05G172902 Glycine max HOM05D003829 ORTHO05D004943 2.6e-35 154.5 145 59.3
Rhsim09G0090700 Rhododendron simsii HOM05D000822 ORTHO05D002021 1.0e-34 152.5 178 51.7
HPP92_013186 Vanilla planifolia HOM05D003829 ORTHO05D004943 3.8e-34 150.6 189 49.7
SEGI_23908 Sequoiadendron giganteum HOM05D003829 ORTHO05D004052 5.7e-30 136.7 85 77.6
HanXRQChr05g0129701 Helianthus annuus HOM05D003829 ORTHO05D044979 1.8e-28 131.7 85 75.3
Glyma.10G113400 Glycine max HOM05D003829 ORTHO05D028379 2.4e-28 131.3 174 46.6
TPR.G25992 Trifolium pratense HOM05D003829 ORTHO05D015515 1.6e-24 118.6 71 78.9
Hma1.2p1_0340F.1_g130220 Hydrangea macrophylla HOM05D003829 ORTHO05D004943 2.7e-24 117.9 127 50.4
MELO3C000039.2 Cucumis melo HOM05D003829 ORTHO05D004943 1.4e-23 115.5 75 69.3
CARHR202060 Cardamine hirsuta HOM05D003829 ORTHO05D116213 6.8e-23 113.2 66 80.3
HPP92_012679 Vanilla planifolia HOM05D000282 ORTHO05D004791 1.3e-18 99.0 136 43.4
MELO3C029751.2 Cucumis melo HOM05D003829 ORTHO05D044979 2.9e-18 97.8 60 76.7
Lsat_1_v5_gn_3_100941 Lactuca sativa HOM05D002028 ORTHO05D022527 2.0e-14 85.1 71 56.3
Haze_25315 Corylus avellana HOM05D003829 ORTHO05D004943 4.5e-11 73.9 60 56.7
Lsat_1_v5_gn_4_30320 Lactuca sativa HOM05D003829 ORTHO05D015515 1.3e-10 72.4 38 84.2
Nitab4.5_0000138g0100 Nicotiana tabacum HOM05D003829 ORTHO05D284283 1.9e-09 68.6 104 43.3
TAR374G1547 Trochodendron aralioides HOM05D003829 ORTHO05D004943 4.7e-08 63.9 32 81.2
BolC1t02481H Brassica oleracea HOM05D003829 ORTHO05D015515 1.0e-07 62.8 48 66.7
A03p61070 Brassica napus HOM05D003829 ORTHO05D028154 3.0e-07 61.2 45 64.4
BraA03t15147Z Brassica rapa HOM05D040596 ORTHO05D028154 3.0e-07 61.2 45 64.4
BcaC09g50448 Brassica carinata HOM05D015232 ORTHO05D015515 3.4e-06 57.8 48 60.4
C01p25310 Brassica napus HOM05D015232 ORTHO05D015515 3.4e-06 57.8 48 60.4
A10p07150 Brassica napus HOM05D015232 ORTHO05D015515 5.7e-06 57.0 48 60.4


User provided reference genes

Program Settings