Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 1.3e-284 982.6 610 100.0
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 1.6e-229 799.7 615 88.0
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 2.1e-221 772.7 618 81.7
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 6.4e-194 681.4 638 72.1
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 8.3e-194 681.0 629 71.7
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 4.3e-190 668.7 625 70.4
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 2.8e-189 666.0 628 71.3
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 2.8e-189 666.0 624 70.0
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 8.9e-188 661.0 631 68.9
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 2.3e-180 636.3 640 67.0
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 5.2e-180 635.2 640 65.5
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 1.5e-179 633.6 631 66.6
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.9e-178 629.4 636 66.5
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 4.1e-177 625.5 636 66.0
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.1e-176 623.2 636 65.9
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 4.6e-176 622.1 622 69.0
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 6.6e-175 618.2 631 68.6
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 2.5e-174 616.3 498 72.3
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 7.3e-174 614.8 627 71.8
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 6.2e-173 611.7 633 64.5
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 8.1e-173 611.3 630 65.6
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.8e-172 610.1 521 68.1
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 6.8e-172 608.2 633 64.0
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 3.4e-171 605.9 634 62.1
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 5.8e-171 605.1 623 70.9
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 6.4e-170 601.7 623 63.2
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 1.4e-169 600.5 629 69.6
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 2.1e-168 596.7 626 64.4
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 2.3e-167 593.2 627 70.5
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 3.0e-167 592.8 519 65.7
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 3.0e-167 592.8 647 63.2
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 1.9e-166 590.1 560 66.4
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 5.6e-166 588.6 685 59.7
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 3.6e-165 585.9 634 64.4
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 3.6e-165 585.9 621 70.0
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 6.2e-165 585.1 545 64.0
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 4.0e-164 582.4 630 66.8
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 4.0e-164 582.4 646 63.0
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.5e-163 580.5 540 66.3
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 3.4e-163 579.3 635 62.7
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 4.4e-163 578.9 522 68.0
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 4.4e-163 578.9 628 68.6
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 5.8e-163 578.6 522 68.0
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 7.6e-163 578.2 630 66.7
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 8.4e-162 574.7 534 67.0
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 3.2e-161 572.8 628 68.9
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 5.4e-161 572.0 675 61.9
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.2e-160 570.9 525 65.5
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 3.5e-160 569.3 632 63.9
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 4.6e-160 568.9 628 69.3
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 2.3e-159 566.6 650 60.6
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 1.5e-158 563.9 631 61.6
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 1.9e-158 563.5 541 72.1
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 4.8e-157 558.9 624 66.7
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 3.1e-156 556.2 627 62.0
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 5.3e-156 555.4 457 69.1
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 7.6e-155 551.6 518 64.5
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 3.8e-154 549.3 422 71.3
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 6.4e-154 548.5 540 65.0
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 1.9e-153 547.0 512 66.0
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 3.2e-153 546.2 530 63.6
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 6.0e-152 542.0 567 62.6
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 1.8e-151 540.4 485 67.0
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 3.0e-151 539.7 507 62.1
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.5e-150 537.3 425 71.5
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 1.3e-149 534.3 629 60.6
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 1.6e-149 533.9 547 61.6
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 1.1e-148 531.2 650 55.2
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 3.4e-147 526.2 622 63.7
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 7.6e-147 525.0 473 66.4
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 3.8e-146 522.7 430 68.4
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 1.6e-144 517.3 475 66.5
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 1.6e-144 517.3 413 69.7
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 2.1e-144 516.9 631 56.9
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 6.0e-144 515.4 633 55.5
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 1.5e-142 510.8 632 61.1
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 1.5e-142 510.8 504 64.5
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 1.3e-141 507.7 475 62.7
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 1.3e-141 507.7 628 62.7
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 1.3e-141 507.7 627 58.4
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 5.3e-140 502.3 665 51.6
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 5.8e-139 498.8 628 62.3
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 5.0e-138 495.7 542 57.9
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 8.4e-138 495.0 460 62.6
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 1.9e-137 493.8 449 63.7
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 7.9e-136 488.4 510 61.4
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 2.3e-135 486.9 683 56.5
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 5.9e-131 472.2 366 75.7
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 2.1e-128 463.8 471 58.6
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 6.3e-125 452.2 515 57.7
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 8.2e-125 451.8 556 52.0
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 6.9e-124 448.7 520 56.9
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 2.5e-121 440.3 512 58.2
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 5.5e-121 439.1 656 54.4
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 1.6e-120 437.6 541 55.5
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 4.7e-120 436.0 458 57.2
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 8.8e-119 431.8 346 67.6
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 4.4e-118 429.5 544 54.8
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 3.7e-117 426.4 553 53.3
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 1.4e-116 424.5 516 55.8
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.4e-116 424.5 514 57.0
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 4.1e-116 422.9 514 56.8
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 5.3e-116 422.5 449 56.6
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 9.1e-116 421.8 521 55.7
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 2.9e-114 416.8 532 52.8
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 2.3e-111 407.1 503 51.3
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 1.7e-109 401.0 543 53.4
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 2.2e-109 400.6 421 56.3
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.4e-108 397.9 386 59.3
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.1e-104 384.0 370 67.8
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.1e-104 384.0 370 67.8
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.4e-103 381.3 370 67.6
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 2.3e-103 380.6 370 67.8
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 6.8e-95 352.4 310 72.9
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 8.3e-93 345.5 349 56.2
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 7.3e-89 332.4 352 54.5
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 2.1e-88 330.9 364 53.3
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 3.0e-87 327.0 459 50.8
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 2.0e-86 324.3 337 54.3
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 3.7e-85 320.1 339 55.5
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 9.5e-73 278.9 468 42.5
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 6.8e-71 272.7 521 41.3
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 1.2e-70 271.9 393 45.3
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 5.8e-70 269.6 397 44.1
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 2.4e-60 237.7 346 45.4
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 8.6e-58 229.2 134 92.5
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 8.9e-55 219.2 303 45.5
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 2.6e-54 217.6 265 61.1
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.6e-51 206.8 531 37.7
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 1.7e-50 204.9 212 90.1
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 9.6e-49 199.1 258 68.6
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 9.9e-46 189.1 169 62.1
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 7.4e-41 172.9 103 81.6
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 7.4e-33 146.4 174 52.3
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 6.7e-26 123.2 282 34.0
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.1e-25 122.5 272 36.4
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 2.5e-25 121.3 331 31.1
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 1.3e-21 109.0 61 90.2
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 5.0e-21 107.1 273 32.2
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 4.3e-17 94.0 144 48.6
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 6.3e-16 90.1 83 54.2
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 1.7e-13 82.0 94 51.1
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 2.5e-12 78.2 41 90.2
FAN18G1977 Fragaria x ananassa HOM05D004839 ORTHO05D006012 3.3e-09 67.8 194 54.6
Gorai.011G032300 Gossypium raimondii HOM05D004839 ORTHO05D006012 1.7e-08 65.5 137 49.6
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 5.3e-07 60.5 41 68.3


User provided reference genes

Program Settings