Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1162400 Malus domestica HOM05D006589 ORTHO05D008350 0.0e+00 1327.8 680 100.0
Prupe.5G155500 Prunus persica HOM05D006589 ORTHO05D008350 0.0e+00 1182.2 680 86.5
FvH4_5g07670 Fragaria vesca HOM05D006589 ORTHO05D008350 0.0e+00 1112.1 682 81.2
FAN18G3475 Fragaria x ananassa HOM05D006589 ORTHO05D008350 0.0e+00 1106.3 682 80.9
RcHm_v2.0_Chr7g0190801 Rosa chinensis HOM05D006589 ORTHO05D008350 0.0e+00 1104.7 686 81.8
FAN04G1748 Fragaria x ananassa HOM05D006589 ORTHO05D008350 0.0e+00 1100.1 682 80.9
FAN13G0522 Fragaria x ananassa HOM05D006589 ORTHO05D008350 0.0e+00 1099.7 682 80.9
FAN08G0518 Fragaria x ananassa HOM05D006589 ORTHO05D008350 0.0e+00 1093.6 687 79.9
CANSAT80G0035 Cannabis sativa HOM05D006589 ORTHO05D008350 3.5e-310 1067.8 692 76.2
Cfa018872 Carpinus fangiana HOM05D006589 ORTHO05D008350 6.2e-299 1030.4 689 76.3
Dinv04849 Davidia involucrata HOM05D006589 ORTHO05D008350 1.4e-298 1029.2 641 79.3
Haze_07256 Corylus avellana HOM05D006589 ORTHO05D008350 2.4e-298 1028.5 691 75.5
CsaV3_1G000740 Cucumis sativus L. HOM05D006589 ORTHO05D008350 3.1e-298 1028.1 690 74.9
Gohir.A07G053200 Gossypium hirsutum HOM05D006589 ORTHO05D008350 1.3e-296 1022.7 688 74.4
Gohir.D07G057600 Gossypium hirsutum HOM05D006589 ORTHO05D008350 4.9e-296 1020.8 688 74.4
Thecc.03G124600 Theobroma cacao HOM05D006589 ORTHO05D008350 1.4e-295 1019.2 683 73.6
CSS0007976 Camellia sinensis var. sinensis HOM05D006589 ORTHO05D008350 7.4e-292 1006.9 681 75.2
Gorai.001G061100 Gossypium raimondii HOM05D006589 ORTHO05D008350 7.4e-292 1006.9 684 73.8
Potri.015G091700 Populus trichocarpa HOM05D006589 ORTHO05D008350 2.1e-291 1005.4 678 72.1
COL.COLO4_16830 Corchorus olitorius HOM05D006589 ORTHO05D008350 1.1e-290 1003.0 692 72.7
Eucgr.B00143 Eucalyptus grandis HOM05D006589 ORTHO05D008350 1.4e-290 1002.7 642 76.0
Atru.chr9.1023 Acer truncatum HOM05D006589 ORTHO05D008350 1.2e-289 999.6 629 76.9
Sabra15G0113500 Salix brachista HOM05D006589 ORTHO05D008350 5.8e-289 997.3 678 71.7
Glyma.04G193700 Glycine max HOM05D006589 ORTHO05D008350 6.5e-288 993.8 683 73.6
Actinidia36794 Actinidia chinensis HOM05D006589 ORTHO05D008350 4.2e-287 991.1 641 75.8
Nitab4.5_0005327g0070 Nicotiana tabacum HOM05D006589 ORTHO05D008350 1.2e-286 989.6 687 72.9
THA.LOC104798952 Tarenaya hassleriana HOM05D006589 ORTHO05D008350 1.6e-286 989.2 682 71.6
TAR622G1334 Trochodendron aralioides HOM05D006589 ORTHO05D008350 1.6e-286 989.2 689 72.4
QL10p004744 Quercus lobata HOM05D006589 ORTHO05D008350 2.7e-286 988.4 699 72.1
Ciclev10019152m.g Citrus clementina HOM05D006589 ORTHO05D008350 3.5e-286 988.0 685 74.5
Nn4g22414 Nelumbo nucifera HOM05D006589 ORTHO05D008350 7.9e-286 986.9 640 76.6
TWI23G0930 Tripterygium wilfordii HOM05D006589 ORTHO05D008350 7.9e-286 986.9 683 71.2
Manes.14G054400 Manihot esculenta HOM05D006589 ORTHO05D008350 1.0e-285 986.5 692 72.0
ClCG06G017720 Citrullus lanatus HOM05D006589 ORTHO05D008350 1.8e-285 985.7 689 73.0
Sed0022036 Sechium edule HOM05D006589 ORTHO05D008350 5.1e-285 984.2 694 71.3
Glyma.06G172400 Glycine max HOM05D006589 ORTHO05D008350 1.3e-283 979.5 683 73.6
Nitab4.5_0001664g0100 Nicotiana tabacum HOM05D006589 ORTHO05D008350 2.1e-283 978.8 688 72.5
Peaxi162Scf00089g00326 Petunia axillaris HOM05D006589 ORTHO05D008350 3.7e-283 978.0 686 72.0
Ca_15262_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 1.4e-282 976.1 681 71.4
PGR083G2113 Punica granatum HOM05D006589 ORTHO05D008350 3.1e-282 974.9 696 70.5
Aqoxy5G03523 Aquilegia oxysepala HOM05D006589 ORTHO05D008350 3.6e-278 961.4 638 74.8
Sc22g0004160 Simmondsia chinensis HOM05D006589 ORTHO05D008350 6.1e-278 960.7 685 71.4
Cpa.g.sc4.99 Carica papaya HOM05D006589 ORTHO05D008350 2.3e-277 958.7 681 72.4
EL10As4g23464 Beta vulgaris HOM05D006589 ORTHO05D008350 6.7e-277 957.2 636 72.3
Medtr3g075050 Medicago truncatula HOM05D006589 ORTHO05D008350 4.3e-276 954.5 685 69.1
PSO063G3222 Papaver somniferum HOM05D006589 ORTHO05D008350 5.7e-276 954.1 656 73.3
Psat5g140160 Pisum sativum HOM05D006589 ORTHO05D008350 1.3e-275 953.0 681 69.5
Migut.I00491 Erythranthe guttata HOM05D006589 ORTHO05D008350 1.6e-275 952.6 645 72.9
Lj1g0010015 Lotus japonicus HOM05D006589 ORTHO05D008350 2.2e-275 952.2 699 70.1
PGSC0003DMG400015251 Solanum tuberosum HOM05D006589 ORTHO05D008350 2.8e-275 951.8 687 70.0
Solyc03g111050.3 Solanum lycopersicum HOM05D006589 ORTHO05D008350 3.7e-275 951.4 687 70.6
PSO782G1921 Papaver somniferum HOM05D006589 ORTHO05D008350 1.4e-274 949.5 652 72.2
Sopen03g030220 Solanum pennellii HOM05D006589 ORTHO05D008350 1.8e-274 949.1 686 70.7
Phvul.009G168200 Phaseolus vulgaris HOM05D006589 ORTHO05D008350 4.5e-273 944.5 686 70.7
Duzib205G1155 Durio zibethinus HOM05D006589 ORTHO05D008350 1.3e-272 943.0 694 69.3
TPR.G26148 Trifolium pratense HOM05D006589 ORTHO05D008350 8.5e-272 940.3 697 67.9
arahy.Tifrunner.gnm1.ann1.DGQ22E Arachis hypogaea HOM05D006589 ORTHO05D008350 4.2e-271 937.9 692 68.4
SalBow5G0933 Salvia bowleyana HOM05D006589 ORTHO05D008350 4.2e-271 937.9 642 71.8
SalBow5G1883 Salvia bowleyana HOM05D006589 ORTHO05D008350 5.5e-271 937.6 641 71.8
Lalb_Chr11g0069681 Lupinus albus HOM05D006589 ORTHO05D008350 9.4e-271 936.8 688 68.5
arahy.Tifrunner.gnm1.ann1.RTQA9M Arachis hypogaea HOM05D006589 ORTHO05D008350 6.1e-270 934.1 692 67.9
Aa31LG4G17110 Aethionema arabicum HOM05D006589 ORTHO05D008350 1.4e-269 932.9 636 72.8
CARHR157250 Cardamine hirsuta HOM05D006589 ORTHO05D008350 1.4e-269 932.9 634 71.8
AL5G27930 Arabidopsis lyrata HOM05D006589 ORTHO05D008350 3.9e-269 931.4 674 69.9
Lj5A99T74 Lonicera japonica HOM05D006589 ORTHO05D008350 2.6e-268 928.7 712 67.4
Thhalv10010171m.g Eutrema salsugineum HOM05D006589 ORTHO05D008350 1.7e-267 926.0 674 70.6
DCAR_007473 Daucus carota HOM05D006589 ORTHO05D008350 9.1e-266 920.2 688 67.7
Sp5g13530 Schrenkiella parvula HOM05D006589 ORTHO05D008350 2.0e-265 919.1 670 68.2
Carub.0005s1468 Capsella rubella HOM05D006589 ORTHO05D008350 2.6e-265 918.7 670 69.1
BcaC09g49867 Brassica carinata HOM05D006589 ORTHO05D008350 3.8e-264 914.8 666 69.4
BolC1t03137H Brassica oleracea HOM05D006589 ORTHO05D008350 8.5e-264 913.7 666 69.2
C01p32170 Brassica napus HOM05D006589 ORTHO05D008350 1.1e-263 913.3 666 69.2
BcaB05g23014 Brassica carinata HOM05D006589 ORTHO05D008350 4.2e-263 911.4 674 68.7
BraA01t02452Z Brassica rapa HOM05D006589 ORTHO05D008350 7.2e-263 910.6 665 68.6
A01p25610 Brassica napus HOM05D006589 ORTHO05D008350 3.6e-262 908.3 665 68.4
Hund02417 Selenicereus undatus HOM05D006589 ORTHO05D008350 1.4e-258 896.3 687 67.1
Lsat_1_v5_gn_5_13320 Lactuca sativa HOM05D006589 ORTHO05D008350 1.0e-256 890.2 677 65.4
HanXRQChr05g0158451 Helianthus annuus HOM05D006589 ORTHO05D008350 3.6e-254 881.7 677 64.1
AT3G48500 Arabidopsis thaliana HOM05D006589 ORTHO05D008350 6.1e-254 880.9 675 66.7
CDE02G2664 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 1.0e-253 880.2 638 68.8
MELO3C026221.2 Cucumis melo HOM05D006589 ORTHO05D008350 5.5e-247 857.8 812 58.3
Cc04_g10160 Coffea canephora HOM05D006589 ORTHO05D008350 4.7e-246 854.7 564 75.2
MBI08_g33782_MAGBIO Magnolia biondii HOM05D006589 ORTHO05D008350 6.1e-246 854.4 648 67.9
GSVIVG01008490001 Vitis vinifera HOM05D006589 ORTHO05D008350 6.8e-245 850.9 560 75.5
ECA246G1540 Erigeron canadensis HOM05D006589 ORTHO05D008350 2.0e-244 849.4 618 67.2
Rhsim12G0172500 Rhododendron simsii HOM05D006589 ORTHO05D008350 4.8e-243 844.7 693 64.9
AUR62025863 Chenopodium quinoa HOM05D006589 ORTHO05D008350 6.5e-240 834.3 635 66.6
CAN.G352.47 Capsicum annuum HOM05D006589 ORTHO05D008350 2.0e-236 822.8 563 73.4
AUR62029828 Chenopodium quinoa HOM05D006589 ORTHO05D008350 7.0e-234 814.3 561 71.3
vmacro16654 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 1.8e-229 799.7 776 55.2
HPP92_003572 Vanilla planifolia HOM05D006589 ORTHO05D008350 2.3e-229 799.3 574 66.9
Ah.02g115320 Amaranthus hybridus HOM05D006589 ORTHO05D008350 3.5e-225 785.4 685 61.0
SGA_v2.0_scaffold161G37820 Striga asiatica HOM05D006589 ORTHO05D008350 1.6e-214 750.0 552 68.3
Zm00001eb365570 Zea mays HOM05D006589 ORTHO05D008350 2.3e-208 729.6 584 62.5
CiPaw.12G036500 Carya illinoinensis HOM05D006589 ORTHO05D008350 7.3e-207 724.5 473 76.5
vmacro16714 Vaccinium macrocarpon HOM05D006589 ORTHO05D008350 4.9e-195 685.3 796 49.1
Oeu006374.4 Olea europaea HOM05D006589 ORTHO05D000550 1.5e-164 583.9 394 71.6
unitig_0.g1070 Utricularia gibba HOM05D006589 ORTHO05D008350 1.1e-149 534.6 376 70.2
Os01g0901900 Oryza sativa ssp. japonica HOM05D006589 ORTHO05D008350 2.1e-145 520.4 422 61.6
Mapoly0120s0021 Marchantia polymorpha HOM05D006589 ORTHO05D008350 4.7e-129 466.1 527 48.4
Pp3c18_13570 Physcomitrium patens HOM05D006589 ORTHO05D008350 1.4e-117 427.9 552 46.4
ATR0060G001 Amborella trichopoda HOM05D006589 ORTHO05D008350 1.3e-115 421.4 349 62.5
FAN21G1369 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.0e-111 407.5 332 64.8
FAN21G3066 Fragaria x ananassa HOM05D006589 ORTHO05D008350 2.0e-111 407.5 332 64.8
Ca_15265_v3 Cicer arietinum L. HOM05D006589 ORTHO05D008350 1.7e-107 394.4 280 70.4
unitig_0.g1069 Utricularia gibba HOM05D006589 ORTHO05D008350 3.4e-95 353.6 262 66.0
SMO356G0597 Selaginella moellendorffii HOM05D006589 ORTHO05D008350 5.4e-85 319.7 558 37.3
RcHm_v2.0_Chr1g0380381 Rosa chinensis HOM05D006589 ORTHO05D008350 1.6e-84 318.2 236 70.3
ATR0686G112 Amborella trichopoda HOM05D006589 ORTHO05D008350 6.0e-84 316.2 231 64.9
CBR_g31403 Chara braunii HOM05D006589 ORTHO05D008350 1.0e-59 235.7 550 30.4
SEGI_40144 Sequoiadendron giganteum HOM05D006589 ORTHO05D008350 2.6e-55 221.1 278 46.0
HPP92_003575 Vanilla planifolia HOM05D006589 ORTHO05D008350 3.4e-55 220.7 206 55.8
FAN25G1587 Fragaria x ananassa HOM05D006589 ORTHO05D008350 4.5e-55 220.3 145 80.0
CDE09G0508 Ceratophyllum demersum HOM05D006589 ORTHO05D008350 2.5e-45 188.0 183 54.1
arahy.Tifrunner.gnm1.ann1.85RMBE Arachis hypogaea HOM05D006589 ORTHO05D008350 2.8e-33 147.9 142 53.5
arahy.Tifrunner.gnm1.ann1.Q1JBFY Arachis hypogaea HOM05D006589 ORTHO05D008350 1.7e-30 138.7 124 54.8
RcHm_v2.0_Chr1g0380361 Rosa chinensis HOM05D006589 ORTHO05D008350 2.7e-15 88.2 77 76.6
MCO14G318 Micromonas commoda HOM05D006589 ORTHO05D008350 3.7e-09 67.8 110 38.2
Cre07.g348500 Chlamydomonas reinhardtii HOM05D006589 ORTHO05D008350 2.7e-07 61.6 91 35.2


User provided reference genes

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