Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 4054.6 2150 100.0
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 3419.4 2195 83.7
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 3197.5 2185 78.9
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 3119.3 2187 76.7
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 3098.1 2214 75.7
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 3076.6 2240 74.6
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 3059.6 2249 74.2
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 3047.7 2258 73.7
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2660.9 2211 68.3
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2592.0 2211 65.8
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2591.2 2240 65.1
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2573.1 2220 66.5
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2558.5 2212 64.3
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2551.2 2220 65.6
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2508.4 2224 63.6
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2486.4 2227 62.8
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2476.0 2225 63.4
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2468.7 2221 62.1
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2441.0 1357 91.3
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2435.2 2223 61.6
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2424.0 2217 61.5
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 2421.7 2224 61.6
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2408.6 2229 61.8
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2406.3 2219 61.2
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2403.2 2217 61.1
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2394.4 2270 60.8
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 2391.7 2227 61.1
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2387.8 2228 61.1
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 2379.0 2215 60.7
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2373.6 2220 60.7
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2371.3 2234 62.1
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2365.9 2223 60.0
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2348.9 2212 60.4
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 2329.3 2223 60.0
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2327.0 2335 59.0
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 2298.1 2259 59.5
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2292.7 2240 58.9
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 2288.8 2222 59.5
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 2274.6 2215 59.5
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 2234.9 2187 58.4
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 2222.2 2210 58.4
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 2215.3 2213 58.2
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 2187.1 2231 57.8
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 2148.6 2218 56.8
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 2139.8 2304 55.7
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 2124.7 2314 55.2
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2119.0 2033 59.2
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 2118.6 2272 55.7
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2117.0 2033 59.5
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 2106.3 2270 55.0
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 2102.4 2134 57.3
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2095.9 2239 56.5
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 2050.4 2222 54.6
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2048.1 1715 65.5
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 2028.8 2240 53.8
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 2015.0 2278 54.3
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 2013.8 2215 53.6
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 2008.4 2228 53.7
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 2002.6 2221 53.6
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 2001.9 2222 53.7
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 1999.2 2235 53.6
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 1994.9 2179 54.3
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 1984.5 2235 53.3
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1963.0 2200 53.0
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1960.7 2193 53.9
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 1955.6 1924 58.1
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 1951.4 2202 52.4
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1950.3 2230 53.0
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 1949.9 2222 52.1
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 1948.7 2213 52.9
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 1942.2 2217 53.0
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 1942.2 2239 52.9
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 1937.5 2218 51.6
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 1937.2 2216 51.9
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 1936.0 2221 52.3
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 1926.4 2220 51.7
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 1924.4 2201 52.8
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 1919.8 2218 51.8
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1880.5 2150 53.3
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1870.5 2165 52.7
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1868.6 2084 54.2
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1865.9 2140 53.5
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1832.4 2176 51.6
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1830.8 1450 71.4
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1795.4 2008 53.5
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1792.7 2213 49.8
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1784.6 1425 66.6
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1736.5 1392 65.4
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1735.7 1391 65.3
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1698.7 2362 47.0
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1571.6 1344 67.1
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1498.4 2178 45.9
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1456.0 2279 44.0
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1388.2 1251 59.2
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1234.2 2214 39.8
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1176.0 1634 48.0
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 0.0e+00 1090.9 1239 55.0
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 1.8e-310 1070.5 1269 53.5
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 2.8e-297 1026.5 814 67.1
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 7.3e-277 958.7 1113 48.2
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 2.0e-274 950.7 1382 48.2
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 6.6e-262 909.1 1310 45.3
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 3.3e-197 694.1 855 58.6
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 8.0e-191 672.9 2445 28.1
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.0e-186 658.3 952 46.5
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 4.7e-183 647.1 434 88.5
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.0e-174 617.5 490 65.5
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 2.1e-154 552.0 943 46.1
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 1.9e-152 545.4 1048 42.4
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 3.3e-152 544.7 847 51.1
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 3.6e-151 541.2 847 51.0
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 1.3e-145 522.7 1648 28.9
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 4.4e-141 507.7 1032 37.2
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 5.3e-134 484.2 1380 29.3
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 2.2e-132 478.8 426 56.8
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 2.4e-126 458.8 342 69.6
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 1.5e-120 439.5 891 36.3
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 3.7e-111 408.3 648 42.4
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 3.9e-105 388.3 215 87.9
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 9.7e-96 357.1 280 62.9
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 4.8e-87 328.2 300 61.0
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 6.1e-82 311.2 1896 22.8
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.7e-76 293.1 335 49.6
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.7e-74 285.8 387 44.7
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 6.3e-71 274.6 467 49.5
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 7.7e-69 267.7 326 47.9
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.2e-68 266.2 163 83.4
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.3e-59 235.3 153 76.5
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 1.7e-55 223.4 236 57.6
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 1.2e-53 217.2 196 72.4
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 3.4e-48 199.1 466 40.1
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 5.4e-46 191.8 335 38.8
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 2.0e-45 189.9 180 62.2
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 2.0e-45 189.9 136 67.6
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 6.2e-42 178.3 112 80.4
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 8.3e-39 167.9 208 44.2
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.3e-36 160.6 699 33.3
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 9.5e-35 154.5 534 28.5
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 6.2e-34 151.8 222 40.1
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 3.4e-32 146.0 127 59.1
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 9.6e-27 127.9 338 33.4
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 2.4e-25 123.2 128 58.6
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 1.4e-22 114.0 68 77.9
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.3e-19 102.8 107 56.1
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 1.9e-14 87.0 198 35.4
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 5.4e-14 85.5 50 86.0
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 3.0e-12 79.7 93 51.6
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 3.9e-12 79.3 133 32.3
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 8.7e-12 78.2 75 60.0
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.5e-11 77.4 80 56.2
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 4.3e-11 75.9 121 40.5
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.3e-10 74.3 428 29.2
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 8.1e-10 71.6 75 56.0
Actinidia03884 Actinidia chinensis HOM05D004426 ORTHO05D005417 9.0e-09 68.2 123 39.0
arahy.Tifrunner.gnm1.ann1.U6LB1L Arachis hypogaea HOM05D046571 ORTHO05D038823 2.2e-07 63.5 42 76.2
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.9e-07 63.2 334 30.5
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 3.8e-07 62.8 79 44.3
ECA233G4409 Erigeron canadensis HOM05D004426 ORTHO05D005417 4.9e-07 62.4 56 64.3
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.9e-06 60.5 65 50.8


User provided reference genes

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