Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1208900 Malus domestica HOM05D006444 ORTHO05D007748 3.0e-105 385.2 195 100.0
Prupe.6G316100 Prunus persica HOM05D006444 ORTHO05D007748 3.0e-81 305.4 199 77.9
FAN14G0724 Fragaria x ananassa HOM05D006444 ORTHO05D007748 9.8e-64 247.3 192 65.6
FvH4_6g07110 Fragaria vesca HOM05D006444 ORTHO05D007748 3.7e-63 245.4 192 65.1
RcHm_v2.0_Chr3g0456691 Rosa chinensis HOM05D006444 ORTHO05D007748 1.1e-62 243.8 192 64.6
FAN05G1290 Fragaria x ananassa HOM05D006444 ORTHO05D007748 4.1e-62 241.9 192 64.6
FAN02G1429 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.3e-59 232.3 192 62.5
Dinv30860 Davidia involucrata HOM05D006444 ORTHO05D007748 6.8e-57 224.6 199 60.8
Haze_04092 Corylus avellana HOM05D006444 ORTHO05D007748 1.1e-54 217.2 199 58.8
QL03p017976 Quercus lobata HOM05D006444 ORTHO05D007748 9.2e-54 214.2 199 60.3
Sabra05G0026600 Salix brachista HOM05D006444 ORTHO05D007748 1.6e-53 213.4 199 58.3
arahy.Tifrunner.gnm1.ann1.T18680 Arachis hypogaea HOM05D006444 ORTHO05D007748 7.8e-53 211.1 195 57.9
GSVIVG01031202001 Vitis vinifera HOM05D006444 ORTHO05D007748 3.9e-52 208.8 193 59.6
Potri.005G020600 Populus trichocarpa HOM05D006444 ORTHO05D007748 5.0e-52 208.4 199 57.3
arahy.Tifrunner.gnm1.ann1.I0464U Arachis hypogaea HOM05D006444 ORTHO05D007748 8.6e-52 207.6 195 56.9
Medtr7g112320 Medicago truncatula HOM05D006444 ORTHO05D007748 1.2e-50 203.8 195 56.9
Glyma.03G233000 Glycine max HOM05D006444 ORTHO05D007748 4.7e-50 201.8 195 57.4
TPR.G1652 Trifolium pratense HOM05D006444 ORTHO05D007748 4.7e-50 201.8 195 55.9
Phvul.001G226600 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 1.1e-49 200.7 195 54.4
Psat3g013840 Pisum sativum HOM05D006444 ORTHO05D007748 1.1e-49 200.7 195 55.9
Lalb_Chr18g0045971 Lupinus albus HOM05D006444 ORTHO05D007748 1.8e-49 199.9 187 54.5
Ca_09322_v3 Cicer arietinum L. HOM05D006444 ORTHO05D007748 2.3e-49 199.5 195 56.9
Manes.09G174800 Manihot esculenta HOM05D006444 ORTHO05D007748 1.5e-48 196.8 200 55.5
COL.COLO4_04127 Corchorus olitorius HOM05D006444 ORTHO05D007748 2.6e-48 196.1 199 55.3
PGR031G3221 Punica granatum HOM05D006444 ORTHO05D007748 3.4e-48 195.7 199 53.8
VMungo1383G3166 Vigna mungo HOM05D006444 ORTHO05D007748 3.4e-48 195.7 195 53.8
CiPaw.07G026800 Carya illinoinensis HOM05D006444 ORTHO05D007748 4.4e-48 195.3 199 55.8
Thecc.05G319500 Theobroma cacao HOM05D006444 ORTHO05D007748 5.8e-48 194.9 200 56.5
Glyma.19G230000 Glycine max HOM05D006444 ORTHO05D007748 2.2e-47 193.0 195 55.9
TWI56G1276 Tripterygium wilfordii HOM05D006444 ORTHO05D007748 2.2e-47 193.0 201 55.2
CSS0047685 Camellia sinensis var. sinensis HOM05D006444 ORTHO05D007748 4.9e-47 191.8 200 55.5
Cpa.g.sc48.132 Carica papaya HOM05D006444 ORTHO05D007748 4.9e-47 191.8 198 55.1
Nitab4.5_0014337g0020 Nicotiana tabacum HOM05D006444 ORTHO05D007748 3.2e-46 189.1 198 54.5
Gohir.A08G207200 Gossypium hirsutum HOM05D006444 ORTHO05D007748 7.1e-46 188.0 201 56.2
Gohir.D08G223800 Gossypium hirsutum HOM05D006444 ORTHO05D007748 2.1e-45 186.4 201 56.2
Actinidia35534 Actinidia chinensis HOM05D006444 ORTHO05D007748 4.6e-45 185.3 199 51.8
ClCG03G017520 Citrullus lanatus HOM05D006444 ORTHO05D007748 4.6e-45 185.3 199 53.8
Gorai.004G237700 Gossypium raimondii HOM05D006444 ORTHO05D007748 4.6e-45 185.3 201 55.7
Hma1.2p1_0472F.1_g159820 Hydrangea macrophylla HOM05D006444 ORTHO05D007748 6.0e-45 184.9 192 55.7
Ciclev10001747m.g Citrus clementina HOM05D006444 ORTHO05D007748 7.8e-45 184.5 197 54.8
Lj1g0016861 Lotus japonicus HOM05D006444 ORTHO05D007748 6.6e-44 181.4 195 52.8
Nitab4.5_0002715g0070 Nicotiana tabacum HOM05D006444 ORTHO05D007748 1.5e-43 180.3 198 53.0
Eucgr.H03280 Eucalyptus grandis HOM05D006444 ORTHO05D007748 1.9e-43 179.9 198 51.5
Hund21734 Selenicereus undatus HOM05D006444 ORTHO05D007748 4.3e-43 178.7 199 52.3
vmacro01541 Vaccinium macrocarpon HOM05D006444 ORTHO05D007748 4.3e-43 178.7 194 49.5
TAR365G0240 Trochodendron aralioides HOM05D006444 ORTHO05D007748 5.6e-43 178.3 213 53.1
Cc10_g14110 Coffea canephora HOM05D006444 ORTHO05D007748 1.2e-42 177.2 193 53.4
Sed0009356 Sechium edule HOM05D006444 ORTHO05D007748 3.6e-42 175.6 199 50.8
Peaxi162Scf00073g00128 Petunia axillaris HOM05D006444 ORTHO05D007748 1.1e-41 174.1 193 52.3
PGSC0003DMG400024779 Solanum tuberosum HOM05D006444 ORTHO05D007748 1.4e-41 173.7 193 51.8
Rhsim11G0093000 Rhododendron simsii HOM05D006444 ORTHO05D007748 1.5e-40 170.2 197 48.2
DCAR_025267 Daucus carota HOM05D006444 ORTHO05D007748 3.4e-40 169.1 195 50.8
Atru.chr2.132 Acer truncatum HOM05D006444 ORTHO05D007748 7.6e-40 167.9 194 51.0
Sopen01g043670 Solanum pennellii HOM05D006444 ORTHO05D007748 9.9e-40 167.5 198 51.0
CsaV3_1G038500 Cucumis sativus L. HOM05D006444 ORTHO05D007748 1.7e-39 166.8 177 49.2
Oeu045894.1 Olea europaea HOM05D006444 ORTHO05D007748 2.4e-38 162.9 192 49.5
TAR362G0047 Trochodendron aralioides HOM05D006444 ORTHO05D007748 2.4e-38 162.9 210 48.6
CAN.G1273.16 Capsicum annuum HOM05D006444 ORTHO05D007748 7.1e-38 161.4 198 49.0
MELO3C015276.2 Cucumis melo HOM05D006444 ORTHO05D007748 1.2e-37 160.6 194 46.4
MSTRG.20391 Avicennia marina HOM05D006444 ORTHO05D007748 3.5e-37 159.1 216 44.0
Lsat_1_v5_gn_7_73840 Lactuca sativa HOM05D006444 ORTHO05D007748 6.0e-37 158.3 197 45.7
Oeu028007.2 Olea europaea HOM05D006444 ORTHO05D007748 6.0e-37 158.3 193 49.7
EL10Ac4g09842 Beta vulgaris HOM05D006444 ORTHO05D007748 7.8e-37 157.9 201 49.3
VMungo0720G1741 Vigna mungo HOM05D006444 ORTHO05D007748 3.0e-36 156.0 200 48.5
Phvul.007G199800 Phaseolus vulgaris HOM05D006444 ORTHO05D007748 1.1e-35 154.1 200 47.5
Glyma.10G148900 Glycine max HOM05D006444 ORTHO05D007748 1.5e-35 153.7 195 47.7
Nn4g25689 Nelumbo nucifera HOM05D006444 ORTHO05D007748 1.2e-34 150.6 175 48.0
Sc16g0008870 Simmondsia chinensis HOM05D006444 ORTHO05D007748 1.2e-34 150.6 199 46.2
Nn3g21596 Nelumbo nucifera HOM05D006444 ORTHO05D007748 1.6e-34 150.2 210 45.7
CANSAT54G2069 Cannabis sativa HOM05D006444 ORTHO05D007748 8.1e-34 147.9 183 49.2
Lj5A342G70 Lonicera japonica HOM05D006444 ORTHO05D007748 3.1e-33 146.0 137 56.9
HanXRQChr15g0495151 Helianthus annuus HOM05D006444 ORTHO05D007748 2.0e-32 143.3 195 42.6
MBI19_g14287_MAGBIO Magnolia biondii HOM05D006444 ORTHO05D007748 4.4e-32 142.1 180 47.2
ECA236G3124 Erigeron canadensis HOM05D006444 ORTHO05D007748 4.9e-31 138.7 198 42.9
Migut.B00986 Erythranthe guttata HOM05D006444 ORTHO05D007748 6.4e-31 138.3 230 41.7
SGA_v2.0_scaffold4G01962 Striga asiatica HOM05D006444 ORTHO05D007748 6.4e-31 138.3 217 42.9
THA.LOC104818740 Tarenaya hassleriana HOM05D006444 ORTHO05D007748 2.7e-29 132.9 198 43.4
Aa31LG11G9750 Aethionema arabicum HOM05D006444 ORTHO05D007748 1.7e-28 130.2 196 43.4
PSO357G0038 Papaver somniferum HOM05D006444 ORTHO05D007748 5.1e-28 128.6 215 40.5
Sp2g21090 Schrenkiella parvula HOM05D006444 ORTHO05D007748 1.9e-27 126.7 189 45.0
PSO170G3086 Papaver somniferum HOM05D006444 ORTHO05D007748 2.5e-27 126.3 215 40.5
SalBow7G4019 Salvia bowleyana HOM05D006444 ORTHO05D007748 2.5e-27 126.3 193 40.9
AUR62000705 Chenopodium quinoa HOM05D006444 ORTHO05D007748 9.6e-27 124.4 149 49.0
CARHR186630 Cardamine hirsuta HOM05D006444 ORTHO05D007748 1.6e-26 123.6 194 43.8
AUR62005256 Chenopodium quinoa HOM05D006444 ORTHO05D007748 1.6e-26 123.6 144 49.3
BolC7t44660H Brassica oleracea HOM05D006444 ORTHO05D007748 2.8e-26 122.9 155 47.1
Thhalv10004624m.g Eutrema salsugineum HOM05D006444 ORTHO05D007748 3.6e-26 122.5 154 46.1
A06p37110 Brassica napus HOM05D006444 ORTHO05D007748 4.8e-26 122.1 155 47.1
BraA06t26637Z Brassica rapa HOM05D006444 ORTHO05D007748 4.8e-26 122.1 155 47.1
CDE02G1332 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 8.1e-26 121.3 139 48.2
C07p41320 Brassica napus HOM05D006444 ORTHO05D007748 1.1e-25 120.9 154 47.4
Carub.0006s2458 Capsella rubella HOM05D006444 ORTHO05D007748 4.0e-25 119.0 182 45.1
Duzib151G0636 Durio zibethinus HOM05D006444 ORTHO05D007748 5.3e-25 118.6 208 40.9
ATR0706G081 Amborella trichopoda HOM05D006444 ORTHO05D007748 9.9e-24 114.4 178 38.2
AL6G38850 Arabidopsis lyrata HOM05D006444 ORTHO05D007748 3.8e-23 112.5 191 42.4
AT5G26940 Arabidopsis thaliana HOM05D006444 ORTHO05D007748 8.4e-23 111.3 194 42.8
CDE09G1197 Ceratophyllum demersum HOM05D006444 ORTHO05D007748 1.9e-22 110.2 71 74.6
Thecc.04G293900 Theobroma cacao HOM05D006444 ORTHO05D007748 1.9e-22 110.2 198 40.4
Aqoxy2G02847 Aquilegia oxysepala HOM05D006444 ORTHO05D007748 1.6e-21 107.1 72 72.2
unitig_46.g18373 Utricularia gibba HOM05D006444 ORTHO05D007748 7.9e-21 104.8 214 38.8
Ciclev10005435m.g Citrus clementina HOM05D006444 ORTHO05D007748 3.0e-20 102.8 195 36.9
HPP92_011867 Vanilla planifolia HOM05D006444 ORTHO05D007748 1.1e-19 100.9 130 45.4
EL10Ac4g09387 Beta vulgaris HOM05D006444 ORTHO05D007748 3.3e-19 99.4 72 68.1
Zm00001eb014130 Zea mays HOM05D006444 ORTHO05D007748 5.6e-19 98.6 65 69.2
Hund21730 Selenicereus undatus HOM05D006444 ORTHO05D007748 2.8e-18 96.3 76 64.5
Os03g0301400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 3.7e-18 95.9 138 39.9
Prupe.1G126500 Prunus persica HOM05D006444 ORTHO05D007748 3.7e-18 95.9 89 53.9
MD13G1159900 Malus domestica HOM05D006444 ORTHO05D007748 1.2e-16 90.9 106 45.3
FvH4_4g19220 Fragaria vesca HOM05D006444 ORTHO05D007748 1.3e-15 87.4 66 56.1
FAN12G3514 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.3e-15 87.4 66 56.1
FAN12G0061 Fragaria x ananassa HOM05D006444 ORTHO05D007748 1.7e-15 87.0 64 57.8
RcHm_v2.0_Chr4g0424201 Rosa chinensis HOM05D006444 ORTHO05D007748 8.4e-15 84.7 107 47.7
Os04g0623400 Oryza sativa ssp. japonica HOM05D006444 ORTHO05D007748 9.3e-14 81.3 80 51.2
AagrBONN_evm.TU.Sc2ySwM_344.4230 Anthoceros agrestis HOM05D006444 ORTHO05D007748 2.1e-13 80.1 68 60.3
FAN07G1328 Fragaria x ananassa HOM05D006444 ORTHO05D007748 3.5e-13 79.3 57 57.9
Atru.chr4.2940 Acer truncatum HOM05D006444 ORTHO05D007748 1.8e-12 77.0 71 54.9
Mapoly0162s0013 Marchantia polymorpha HOM05D006444 ORTHO05D007748 3.0e-12 76.3 68 58.8
SMO116G0265 Selaginella moellendorffii HOM05D006444 ORTHO05D007748 1.1e-11 74.3 70 57.1
Pp3c18_14120 Physcomitrium patens HOM05D001061 ORTHO05D007748 4.3e-11 72.4 66 53.0
SEGI_25648 Sequoiadendron giganteum HOM05D006444 ORTHO05D007748 1.1e-06 57.8 42 71.4


User provided reference genes

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