Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1204900 Malus domestica HOM05D008392 ORTHO05D010441 1.6e-177 625.9 317 100.0
MD12G1205000 Malus domestica HOM05D008392 ORTHO05D010441 3.5e-111 405.6 285 74.4
MD04G1192900 Malus domestica HOM05D008392 ORTHO05D010441 1.2e-108 397.1 287 73.2
Prupe.6G312100 Prunus persica HOM05D008392 ORTHO05D010441 6.2e-108 394.8 269 78.1
RcHm_v2.0_Chr3g0457251 Rosa chinensis HOM05D008392 ORTHO05D010441 4.1e-51 206.1 348 39.9
QL03p014198 Quercus lobata HOM05D008392 ORTHO05D010441 2.3e-46 190.3 279 43.7
CANSAT54G2036 Cannabis sativa HOM05D008392 ORTHO05D010441 3.9e-46 189.5 294 40.8
FAN02G4301 Fragaria x ananassa HOM05D001457 ORTHO05D010441 6.5e-41 172.2 348 35.1
FAN05G3611 Fragaria x ananassa HOM05D008392 ORTHO05D010441 1.2e-39 167.9 391 33.5
FvH4_6g07580 Fragaria vesca HOM05D008392 ORTHO05D010441 6.1e-39 165.6 391 33.2
Lalb_Chr19g0129211 Lupinus albus HOM05D008392 ORTHO05D010441 6.1e-39 165.6 290 41.0
Dinv24467 Davidia involucrata HOM05D008392 ORTHO05D010441 2.6e-37 160.2 272 39.7
CAN.G1076.23 Capsicum annuum HOM05D008392 ORTHO05D010441 7.5e-37 158.7 279 39.8
Actinidia35516 Actinidia chinensis HOM05D008392 ORTHO05D010441 9.7e-37 158.3 301 36.5
Solyc01g100620.3 Solanum lycopersicum HOM05D008392 ORTHO05D010441 9.7e-37 158.3 273 39.2
FAN14G5205 Fragaria x ananassa HOM05D001457 ORTHO05D010441 1.3e-36 157.9 400 32.5
Ca_10178_v3 Cicer arietinum L. HOM05D008392 ORTHO05D010441 2.2e-36 157.1 273 37.0
Sopen01g044120 Solanum pennellii HOM05D008392 ORTHO05D010441 3.7e-36 156.4 282 37.9
Lj5g0025247 Lotus japonicus HOM05D008392 ORTHO05D010441 6.3e-36 155.6 272 37.1
Peaxi162Scf01061g00127 Petunia axillaris HOM05D008392 ORTHO05D010441 1.1e-35 154.8 287 37.3
Glyma.20G096200 Glycine max HOM05D008392 ORTHO05D010441 4.1e-35 152.9 285 36.5
VMungo0720G2188 Vigna mungo HOM05D008392 ORTHO05D010441 4.1e-35 152.9 272 36.8
Phvul.007G202100 Phaseolus vulgaris HOM05D008392 ORTHO05D010441 7.0e-35 152.1 291 35.1
Medtr5g080030 Medicago truncatula HOM05D008392 ORTHO05D010441 9.1e-35 151.8 259 39.0
Lalb_Chr06g0167451 Lupinus albus HOM05D008392 ORTHO05D010441 1.7e-33 147.5 290 36.6
Psat6g152920 Pisum sativum HOM05D008392 ORTHO05D010441 4.2e-32 142.9 288 33.0
TAR362G1147 Trochodendron aralioides HOM05D001261 ORTHO05D010441 1.6e-31 141.0 350 33.1
DCAR_025288 Daucus carota HOM05D008392 ORTHO05D010441 3.6e-31 139.8 281 35.2
Cc02_g35180 Coffea canephora HOM05D008392 ORTHO05D010441 6.1e-31 139.0 240 37.1
DCAR_005422 Daucus carota HOM05D008392 ORTHO05D010441 1.8e-30 137.5 259 37.5
Psat6g152960 Pisum sativum HOM05D008392 ORTHO05D010441 6.8e-30 135.6 290 32.4
Medtr5g095070 Medicago truncatula HOM05D008392 ORTHO05D010441 1.2e-29 134.8 280 36.1
arahy.Tifrunner.gnm1.ann1.DRX87E Arachis hypogaea HOM05D008392 ORTHO05D010441 2.0e-29 134.0 266 33.8
arahy.Tifrunner.gnm1.ann1.S3TC9P Arachis hypogaea HOM05D008392 ORTHO05D010441 2.6e-29 133.7 257 34.6
Lj1g0008102 Lotus japonicus HOM05D008392 ORTHO05D010441 2.2e-28 130.6 230 37.4
SalBow7G4279 Salvia bowleyana HOM05D008392 ORTHO05D010441 2.5e-24 117.1 272 33.1
Oeu053741.2 Olea europaea HOM05D008392 ORTHO05D010441 7.2e-24 115.5 235 36.6
Aqoxy2G02705 Aquilegia oxysepala HOM05D001261 ORTHO05D010441 9.5e-24 115.2 307 31.9
Nn5g30235 Nelumbo nucifera HOM05D001261 ORTHO05D010441 1.6e-23 114.4 295 31.2
Lsat_1_v5_gn_5_40160 Lactuca sativa HOM05D008392 ORTHO05D010441 6.1e-23 112.5 254 32.3
Nitab4.5_0004525g0010 Nicotiana tabacum HOM05D008392 ORTHO05D010441 1.0e-22 111.7 260 33.8
SGA_v2.0_scaffold4G01973 Striga asiatica HOM05D008392 ORTHO05D010441 4.0e-22 109.8 276 32.2
Nitab4.5_0001338g0070 Nicotiana tabacum HOM05D008392 ORTHO05D010441 5.2e-22 109.4 293 32.4
vmacro01573 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 5.2e-22 109.4 265 34.3
Glyma.10G146432 Glycine max HOM05D008392 ORTHO05D010441 3.7e-20 103.2 102 50.0
Rhsim11G0096300 Rhododendron simsii HOM05D008392 ORTHO05D010441 1.2e-18 98.2 251 33.5
ECA246G1668 Erigeron canadensis HOM05D005510 ORTHO05D006750 2.7e-18 97.1 232 31.9
ATR0693G224 Amborella trichopoda HOM05D001261 ORTHO05D001130 2.9e-17 93.6 303 30.0
Psat0s3339g0160 Pisum sativum HOM05D008392 ORTHO05D010441 6.6e-17 92.4 126 42.1
TPR.G8444 Trifolium pratense HOM05D008392 ORTHO05D010441 1.9e-16 90.9 178 39.3
MBI19_g03251_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 1.0e-14 85.1 252 30.2
AUR62036749 Chenopodium quinoa HOM05D001261 ORTHO05D001130 2.0e-10 70.9 262 26.0
Nitab4.5_0003570g0010 Nicotiana tabacum HOM05D001261 ORTHO05D001130 2.7e-10 70.5 265 26.0
Nitab4.5_0002216g0010 Nicotiana tabacum HOM05D001261 ORTHO05D001130 4.6e-10 69.7 265 25.7
Thecc.07G001600 Theobroma cacao HOM05D001261 ORTHO05D001130 1.0e-09 68.6 258 26.7
CAN.G8.47 Capsicum annuum HOM05D001261 ORTHO05D001130 1.3e-09 68.2 267 27.0
SEGI_22736 Sequoiadendron giganteum HOM05D001261 ORTHO05D001130 1.7e-09 67.8 281 24.9
AT1G55650 Arabidopsis thaliana HOM05D001261 ORTHO05D001130 3.9e-09 66.6 250 25.6
CANSAT78G1324 Cannabis sativa HOM05D001261 ORTHO05D001130 3.9e-09 66.6 286 25.2
Migut.B00948 Erythranthe guttata HOM05D008392 ORTHO05D010441 5.0e-09 66.2 240 27.5
AUR62013853 Chenopodium quinoa HOM05D001261 ORTHO05D001130 6.6e-09 65.9 264 26.1
Hund22972 Selenicereus undatus HOM05D001261 ORTHO05D001130 8.6e-09 65.5 128 35.9
Cc05_g15700 Coffea canephora HOM05D001261 ORTHO05D001130 1.1e-08 65.1 263 25.9
ECA232G0527 Erigeron canadensis HOM05D001261 ORTHO05D001130 1.1e-08 65.1 232 26.3
EL10Ac3g06122 Beta vulgaris HOM05D001261 ORTHO05D001130 1.5e-08 64.7 134 32.8
Duzib268G0395 Durio zibethinus HOM05D001261 ORTHO05D001130 2.5e-08 63.9 257 24.5
Gohir.D13G131900 Gossypium hirsutum HOM05D001261 ORTHO05D001130 2.5e-08 63.9 258 26.4
arahy.Tifrunner.gnm1.ann1.J9QP8S Arachis hypogaea HOM05D001261 ORTHO05D001130 3.3e-08 63.5 99 34.3
arahy.Tifrunner.gnm1.ann1.K5DIHH Arachis hypogaea HOM05D001261 ORTHO05D001130 3.3e-08 63.5 99 34.3
FAN16G2494 Fragaria x ananassa HOM05D001261 ORTHO05D001130 3.3e-08 63.5 92 37.0
FAN21G2040 Fragaria x ananassa HOM05D001261 ORTHO05D001130 3.3e-08 63.5 92 37.0
Actinidia16864 Actinidia chinensis HOM05D008392 ORTHO05D010441 5.6e-08 62.8 208 29.8
Cpa.g.sc12.68 Carica papaya HOM05D001261 ORTHO05D001130 5.6e-08 62.8 247 29.1
CDE03G0487 Ceratophyllum demersum HOM05D001261 ORTHO05D001130 7.3e-08 62.4 295 26.8
FvH4_3g41610 Fragaria vesca HOM05D001261 ORTHO05D001130 7.3e-08 62.4 92 37.0
FAN11G1862 Fragaria x ananassa HOM05D001261 ORTHO05D001130 7.3e-08 62.4 92 37.0
FAN25G3495 Fragaria x ananassa HOM05D001261 ORTHO05D001130 7.3e-08 62.4 92 35.9
SEGI_07905 Sequoiadendron giganteum HOM05D001261 ORTHO05D001130 7.3e-08 62.4 93 36.6
Solyc12g094440.2 Solanum lycopersicum HOM05D001261 ORTHO05D001130 7.3e-08 62.4 235 27.2
DCAR_013758 Daucus carota HOM05D001261 ORTHO05D001130 9.5e-08 62.0 133 28.6
Prupe.6G035300 Prunus persica HOM05D001261 ORTHO05D001130 9.5e-08 62.0 237 22.8
Prupe.8G133200 Prunus persica HOM05D008392 ORTHO05D010441 9.5e-08 62.0 46 80.4
Gohir.A13G128500 Gossypium hirsutum HOM05D001261 ORTHO05D001130 1.2e-07 61.6 254 26.0
Gorai.013G147900 Gossypium raimondii HOM05D001261 ORTHO05D001130 1.2e-07 61.6 255 25.5
Pp3c7_23660 Physcomitrium patens HOM05D001261 ORTHO05D001130 1.2e-07 61.6 307 24.1
Actinidia15468 Actinidia chinensis HOM05D001261 ORTHO05D001130 2.8e-07 60.5 228 23.7
MSTRG.13044 Avicennia marina HOM05D001261 ORTHO05D001130 2.8e-07 60.5 274 24.1
Nn5g30869 Nelumbo nucifera HOM05D001261 ORTHO05D001130 2.8e-07 60.5 92 34.8
Cfa016960 Carpinus fangiana HOM05D001261 ORTHO05D001130 3.6e-07 60.1 251 24.3
Lj4A16T126 Lonicera japonica HOM05D001261 ORTHO05D001130 3.6e-07 60.1 233 24.0
Lalb_Chr21g0307471 Lupinus albus HOM05D001261 ORTHO05D001130 3.6e-07 60.1 287 24.0
Hund05144 Selenicereus undatus HOM05D001261 ORTHO05D001130 3.6e-07 60.1 271 25.5
Sopen12g031330 Solanum pennellii HOM05D001261 ORTHO05D001130 3.6e-07 60.1 236 26.7
CDE08G0491 Ceratophyllum demersum HOM05D008392 ORTHO05D010441 4.7e-07 59.7 116 39.7
Haze_11610 Corylus avellana HOM05D001261 ORTHO05D001130 4.7e-07 59.7 294 23.1
Thecc.04G203600 Theobroma cacao HOM05D001261 ORTHO05D001130 4.7e-07 59.7 282 25.9
Thecc.04G201800 Theobroma cacao HOM05D001261 ORTHO05D001130 6.2e-07 59.3 243 24.3
PSO063G2803 Papaver somniferum HOM05D001261 ORTHO05D001130 8.0e-07 58.9 250 23.6
Sabra11G0137900 Salix brachista HOM05D001261 ORTHO05D001130 8.0e-07 58.9 278 24.8
SEGI_03044 Sequoiadendron giganteum HOM05D001261 ORTHO05D001130 8.0e-07 58.9 342 23.1
Solyc12g016190.2 Solanum lycopersicum HOM05D001261 ORTHO05D001130 8.0e-07 58.9 264 25.0
TAR627G0328 Trochodendron aralioides HOM05D001261 ORTHO05D001130 8.0e-07 58.9 117 34.2
CANSAT11G1516 Cannabis sativa HOM05D001261 ORTHO05D001130 1.1e-06 58.5 286 24.5
Ca_14139_v3 Cicer arietinum L. HOM05D001261 ORTHO05D001130 1.1e-06 58.5 249 24.5
FAN07G2115 Fragaria x ananassa HOM05D001261 ORTHO05D001130 1.1e-06 58.5 102 35.3
FAN12G3417 Fragaria x ananassa HOM05D001261 ORTHO05D001130 1.1e-06 58.5 102 35.3
FAN17G1455 Fragaria x ananassa HOM05D001261 ORTHO05D001130 1.1e-06 58.5 102 35.3
FAN22G0086 Fragaria x ananassa HOM05D001261 ORTHO05D001130 1.1e-06 58.5 102 35.3
Medtr1g084150 Medicago truncatula HOM05D008392 ORTHO05D010441 1.1e-06 58.5 105 36.2
Thhalv10021143m.g Eutrema salsugineum HOM05D001261 ORTHO05D001130 1.4e-06 58.2 243 24.7
SEGI_16568 Sequoiadendron giganteum HOM05D001261 ORTHO05D001130 1.4e-06 58.2 335 22.4
Actinidia17023 Actinidia chinensis HOM05D001261 ORTHO05D001130 1.8e-06 57.8 227 24.2
DCAR_024473 Daucus carota HOM05D001261 ORTHO05D001130 1.8e-06 57.8 125 28.8
Migut.B00949 Erythranthe guttata HOM05D008392 ORTHO05D010441 1.8e-06 57.8 45 57.8
Migut.G00695 Erythranthe guttata HOM05D001261 ORTHO05D001130 1.8e-06 57.8 283 22.3
HanXRQChr03g0077881 Helianthus annuus HOM05D001261 ORTHO05D001130 1.8e-06 57.8 122 31.1
Lalb_Chr02g0144151 Lupinus albus HOM05D001261 ORTHO05D001130 1.8e-06 57.8 284 23.2
RcHm_v2.0_Chr5g0074651 Rosa chinensis HOM05D001261 ORTHO05D001130 1.8e-06 57.8 93 33.3
Aa31LG8G570 Aethionema arabicum HOM05D001261 ORTHO05D001130 2.3e-06 57.4 268 26.9
Aqoxy2G03859 Aquilegia oxysepala HOM05D001261 ORTHO05D001130 2.3e-06 57.4 277 23.5
Dinv40915 Davidia involucrata HOM05D001261 ORTHO05D001130 2.3e-06 57.4 104 32.7
Sed0026703 Sechium edule HOM05D001261 ORTHO05D001130 2.3e-06 57.4 289 22.8
ATR0751G203 Amborella trichopoda HOM05D001261 ORTHO05D001130 3.1e-06 57.0 265 23.8
CsaV3_2G011520 Cucumis sativus L. HOM05D001261 ORTHO05D001130 3.1e-06 57.0 290 22.8
Oeu006262.2 Olea europaea HOM05D001261 ORTHO05D001130 3.1e-06 57.0 129 34.1
Sopen12g007980 Solanum pennellii HOM05D001261 ORTHO05D001130 3.1e-06 57.0 264 25.0
THA.LOC104822702 Tarenaya hassleriana HOM05D001261 ORTHO05D001130 3.1e-06 57.0 263 24.7
TPR.G16692 Trifolium pratense HOM05D001261 ORTHO05D001130 3.1e-06 57.0 251 23.1
BolC5t34121H Brassica oleracea HOM05D001261 ORTHO05D001130 4.0e-06 56.6 222 26.6
Cfa014913 Carpinus fangiana HOM05D001261 ORTHO05D001130 4.0e-06 56.6 282 23.4
FvH4_4g16370 Fragaria vesca HOM05D001261 ORTHO05D001130 4.0e-06 56.6 88 36.4
Medtr1g116180 Medicago truncatula HOM05D001261 ORTHO05D001130 4.0e-06 56.6 282 24.1
Nn6g31871 Nelumbo nucifera HOM05D001261 ORTHO05D001130 4.0e-06 56.6 88 33.0
Psat0s2228g0080 Pisum sativum HOM05D001261 ORTHO05D001130 4.0e-06 56.6 88 33.0
SalBow7G1352 Salvia bowleyana HOM05D001261 ORTHO05D001130 4.0e-06 56.6 226 23.9
BcaC05g29186 Brassica carinata HOM05D001261 ORTHO05D001130 5.2e-06 56.2 222 26.6
C05p54550 Brassica napus HOM05D001261 ORTHO05D001130 5.2e-06 56.2 222 26.6
Haze_09915 Corylus avellana HOM05D001261 ORTHO05D001130 5.2e-06 56.2 92 32.6
RcHm_v2.0_Chr4g0415261 Rosa chinensis HOM05D001261 ORTHO05D001130 5.2e-06 56.2 88 35.2
THA.LOC104810304 Tarenaya hassleriana HOM05D001261 ORTHO05D001130 5.2e-06 56.2 253 24.9
GSVIVG01014843001 Vitis vinifera HOM05D001261 ORTHO05D001130 5.2e-06 56.2 92 34.8
CDE06G1624 Ceratophyllum demersum HOM05D000050 ORTHO05D001130 6.8e-06 55.8 88 36.4
Ciclev10008919m.g Citrus clementina HOM05D001261 ORTHO05D001130 6.8e-06 55.8 121 32.2
Glyma.04G113000 Glycine max HOM05D001261 ORTHO05D001130 6.8e-06 55.8 238 25.2
MBI08_g40331_MAGBIO Magnolia biondii HOM05D001261 ORTHO05D001130 6.8e-06 55.8 88 34.1
PGR083G2486 Punica granatum HOM05D001261 ORTHO05D001130 6.8e-06 55.8 267 24.7
PGSC0003DMG400029327 Solanum tuberosum HOM05D001261 ORTHO05D001130 6.8e-06 55.8 213 25.4
Atru.chr4.1702 Acer truncatum HOM05D001261 ORTHO05D001130 8.9e-06 55.5 261 23.8
CARHR087960 Cardamine hirsuta HOM05D001261 ORTHO05D001130 8.9e-06 55.5 226 23.0
AUR62023759 Chenopodium quinoa HOM05D001261 ORTHO05D001130 8.9e-06 55.5 112 33.9
Eucgr.F03526 Eucalyptus grandis HOM05D001261 ORTHO05D001130 8.9e-06 55.5 129 27.9
Medtr7g005970 Medicago truncatula HOM05D001261 ORTHO05D001130 8.9e-06 55.5 97 35.1
SalBow8G0560 Salvia bowleyana HOM05D001261 ORTHO05D001130 8.9e-06 55.5 288 21.9


User provided reference genes

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