Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD12G1123900 Malus domestica HOM05D005876 ORTHO05D007326 7.9e-186 653.7 340 100.0
Prupe.4G230000 Prunus persica HOM05D005876 ORTHO05D007326 1.8e-145 519.6 313 87.2
MD04G1104000 Malus domestica HOM05D005876 ORTHO05D007326 1.7e-140 503.1 323 83.3
RcHm_v2.0_Chr3g0468881 Rosa chinensis HOM05D005876 ORTHO05D007326 6.0e-125 451.4 312 77.2
FAN14G3435 Fragaria x ananassa HOM05D005876 ORTHO05D007326 5.1e-124 448.4 322 73.6
FAN02G3306 Fragaria x ananassa HOM05D005876 ORTHO05D007326 8.1e-122 441.0 311 74.3
FvH4_6g15400 Fragaria vesca HOM05D005876 ORTHO05D007326 1.4e-121 440.3 311 74.3
FAN09G4005 Fragaria x ananassa HOM05D005876 ORTHO05D007326 3.9e-108 395.6 289 73.0
Thecc.05G054500 Theobroma cacao HOM05D005876 ORTHO05D007326 1.1e-102 377.5 312 64.1
CANSAT80G1885 Cannabis sativa HOM05D005876 ORTHO05D007326 2.4e-102 376.3 309 62.1
Atru.chr8.2559 Acer truncatum HOM05D005876 ORTHO05D007326 5.4e-102 375.2 314 65.3
Ciclev10012269m.g Citrus clementina HOM05D005876 ORTHO05D007326 9.3e-102 374.4 314 63.7
Duzib093G1198 Durio zibethinus HOM05D005876 ORTHO05D007326 2.3e-100 369.8 314 63.7
CSS0011524 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 3.6e-98 362.5 311 60.5
QL07p024280 Quercus lobata HOM05D005876 ORTHO05D007326 3.1e-97 359.4 312 62.8
Dinv37257 Davidia involucrata HOM05D005876 ORTHO05D007326 9.0e-97 357.8 308 60.1
Glyma.11G012100 Glycine max HOM05D005876 ORTHO05D007326 1.7e-95 353.6 307 62.2
Gorai.002G249900 Gossypium raimondii HOM05D005876 ORTHO05D007326 2.4e-94 349.7 308 62.0
CiPaw.09G179800 Carya illinoinensis HOM05D005876 ORTHO05D007326 7.1e-94 348.2 324 61.4
Gohir.A01G216800 Gossypium hirsutum HOM05D005876 ORTHO05D007326 7.1e-94 348.2 308 62.0
QL03p054300 Quercus lobata HOM05D005876 ORTHO05D007326 5.1e-92 342.0 312 60.9
Gohir.D01G205600 Gossypium hirsutum HOM05D005876 ORTHO05D007326 1.5e-91 340.5 305 60.7
Hma1.2p1_0350F.1_g132760 Hydrangea macrophylla HOM05D005876 ORTHO05D007326 3.3e-91 339.3 318 57.2
Migut.J00418 Erythranthe guttata HOM05D005876 ORTHO05D007326 1.3e-90 337.4 308 58.4
TAR375G0626 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.4e-89 334.0 317 56.5
GSVIVG01025628001 Vitis vinifera HOM05D005876 ORTHO05D007326 3.1e-89 332.8 312 58.0
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 5.3e-89 332.0 317 59.6
Manes.09G081419 Manihot esculenta HOM05D005876 ORTHO05D007326 6.9e-89 331.6 313 59.4
LjContig00222g0022274 Lotus japonicus HOM05D005876 ORTHO05D007326 1.5e-88 330.5 304 59.2
Lj1g0007669 Lotus japonicus HOM05D005876 ORTHO05D007326 3.4e-88 329.3 304 58.9
MSTRG.5723 Avicennia marina HOM05D005876 ORTHO05D007326 4.9e-87 325.5 306 57.5
Actinidia13103 Actinidia chinensis HOM05D005876 ORTHO05D007326 8.4e-87 324.7 299 59.9
CSS0006806 Camellia sinensis var. sinensis HOM05D005876 ORTHO05D007326 1.1e-86 324.3 238 66.0
Sopen09g002270 Solanum pennellii HOM05D005876 ORTHO05D007326 1.4e-86 323.9 313 52.1
PGSC0003DMG400001766 Solanum tuberosum HOM05D005876 ORTHO05D007326 2.5e-86 323.2 313 51.4
Nn2g10678 Nelumbo nucifera HOM05D005876 ORTHO05D007326 7.1e-86 321.6 312 58.3
Solyc09g007370.4 Solanum lycopersicum HOM05D005876 ORTHO05D007326 2.1e-85 320.1 313 51.1
Haze_20644 Corylus avellana HOM05D005876 ORTHO05D007326 7.9e-85 318.2 305 58.7
Potri.001G033900 Populus trichocarpa HOM05D005876 ORTHO05D007326 1.5e-83 313.9 304 55.9
Cc11_g02990 Coffea canephora HOM05D005876 ORTHO05D007326 1.9e-83 313.5 310 55.5
MBI19_g11838_MAGBIO Magnolia biondii HOM05D005876 ORTHO05D007326 3.3e-83 312.8 319 54.5
Phvul.002G038100 Phaseolus vulgaris HOM05D005876 ORTHO05D007326 7.4e-83 311.6 304 59.2
TPR.G38017 Trifolium pratense HOM05D005876 ORTHO05D007326 2.1e-82 310.1 323 54.2
CAN.G1676.1 Capsicum annuum HOM05D005876 ORTHO05D007326 1.4e-81 307.4 305 51.5
TAR633G1288 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.5e-80 303.9 309 54.7
Sc23g0005710 Simmondsia chinensis HOM05D005876 ORTHO05D007326 6.5e-79 298.5 312 52.9
ECA238G3410 Erigeron canadensis HOM05D005876 ORTHO05D007326 2.5e-78 296.6 308 53.2
vmacro08700 Vaccinium macrocarpon HOM05D005876 ORTHO05D007326 3.2e-78 296.2 398 45.7
Eucgr.D00282 Eucalyptus grandis HOM05D005876 ORTHO05D007326 1.2e-77 294.3 310 54.8
Lalb_Chr01g0022971 Lupinus albus HOM05D005876 ORTHO05D007326 3.5e-77 292.7 304 54.9
SalBow3G2410 Salvia bowleyana HOM05D005876 ORTHO05D007326 3.0e-76 289.7 293 54.3
SalBow3G3945 Salvia bowleyana HOM05D005876 ORTHO05D007326 6.7e-76 288.5 293 54.3
THA.LOC104826952 Tarenaya hassleriana HOM05D005876 ORTHO05D007326 3.3e-75 286.2 312 51.6
SGA_v2.0_scaffold75G24879 Striga asiatica HOM05D005876 ORTHO05D007326 4.3e-75 285.8 314 50.3
PSO063G0740 Papaver somniferum HOM05D005876 ORTHO05D007326 5.3e-73 278.9 287 55.7
EL10Ac7g17355 Beta vulgaris HOM05D005876 ORTHO05D007326 6.9e-73 278.5 316 50.3
AT2G43190 Arabidopsis thaliana HOM05D005876 ORTHO05D007326 1.2e-72 277.7 309 50.5
Psat0s769g0080 Pisum sativum HOM05D005876 ORTHO05D007326 1.5e-72 277.3 314 51.6
AL4G41850 Arabidopsis lyrata HOM05D005876 ORTHO05D007326 2.6e-72 276.6 309 50.8
CARHR138250 Cardamine hirsuta HOM05D005876 ORTHO05D007326 2.6e-72 276.6 309 50.2
Lsat_1_v5_gn_3_120281 Lactuca sativa HOM05D005876 ORTHO05D007326 1.3e-71 274.2 309 49.8
Carub.0004s2566 Capsella rubella HOM05D005876 ORTHO05D007326 1.7e-71 273.9 309 49.8
VMungo1215G0672 Vigna mungo HOM05D005876 ORTHO05D007326 2.2e-71 273.5 286 56.3
Sp4g25310 Schrenkiella parvula HOM05D005876 ORTHO05D007326 1.1e-70 271.2 311 51.1
Nitab4.5_0005274g0030 Nicotiana tabacum HOM05D005876 ORTHO05D007326 2.5e-70 270.0 256 52.7
CDE05G1905 Ceratophyllum demersum HOM05D005876 ORTHO05D007326 5.5e-70 268.9 244 57.0
ATR0618G001 Amborella trichopoda HOM05D005876 ORTHO05D007326 1.2e-69 267.7 307 50.2
TWI74G1051 Tripterygium wilfordii HOM05D005876 ORTHO05D007326 3.6e-69 266.2 281 53.7
Aa31LG1G25010 Aethionema arabicum HOM05D005876 ORTHO05D007326 1.1e-67 261.2 307 49.5
Lj2C107T12 Lonicera japonica HOM05D005876 ORTHO05D007326 1.5e-67 260.8 281 53.7
C04p04270 Brassica napus HOM05D005876 ORTHO05D007326 4.3e-67 259.2 313 47.9
HanXRQChr07g0195281 Helianthus annuus HOM05D005876 ORTHO05D007326 1.3e-66 257.7 293 50.5
Cpa.g.sc45.33 Carica papaya HOM05D005876 ORTHO05D007326 1.7e-66 257.3 323 48.3
Thhalv10001741m.g Eutrema salsugineum HOM05D005876 ORTHO05D007326 1.7e-66 257.3 223 59.6
BolC4t22063H Brassica oleracea HOM05D005876 ORTHO05D007326 3.7e-66 256.1 313 48.2
Nitab4.5_0001763g0100 Nicotiana tabacum HOM05D005876 ORTHO05D007326 6.3e-66 255.4 320 46.2
Sabra01G0024100 Salix brachista HOM05D001063 ORTHO05D000986 4.1e-65 252.7 286 50.0
COL.COLO4_06720 Corchorus olitorius HOM05D005876 ORTHO05D007326 6.9e-65 251.9 245 56.3
DCAR_009286 Daucus carota HOM05D005876 ORTHO05D007326 1.2e-64 251.1 317 47.3
Sed0002034 Sechium edule HOM05D005876 ORTHO05D007326 1.0e-63 248.1 302 49.7
BraA05t19352Z Brassica rapa HOM05D005876 ORTHO05D007326 1.7e-63 247.3 311 46.6
CsaV3_3G035590 Cucumis sativus L. HOM05D005876 ORTHO05D007326 3.8e-63 246.1 311 47.6
A05p03670 Brassica napus HOM05D005876 ORTHO05D007326 5.0e-63 245.7 311 46.3
arahy.Tifrunner.gnm1.ann1.09MUKR Arachis hypogaea HOM05D005876 ORTHO05D007326 8.5e-63 245.0 272 50.7
Peaxi162Scf00005g04511 Petunia axillaris HOM05D005876 ORTHO05D007326 1.1e-62 244.6 261 52.1
MELO3C009318.2 Cucumis melo HOM05D005876 ORTHO05D007326 5.5e-62 242.3 318 47.8
arahy.Tifrunner.gnm1.ann1.SSK647 Arachis hypogaea HOM05D005876 ORTHO05D007326 2.1e-61 240.4 274 51.1
Ca_24451_v3 Cicer arietinum L. HOM05D005876 ORTHO05D007326 3.6e-61 239.6 279 52.7
Medtr5g007880 Medicago truncatula HOM05D005876 ORTHO05D007326 5.1e-60 235.7 317 48.6
HPP92_015422 Vanilla planifolia HOM05D005876 ORTHO05D007326 1.5e-59 234.2 307 42.3
Os05g0472300 Oryza sativa ssp. japonica HOM05D005876 ORTHO05D007326 1.3e-58 231.1 307 44.6
ClCG10G020530 Citrullus lanatus HOM05D005876 ORTHO05D007326 2.2e-58 230.3 288 48.6
Aqoxy4G03207 Aquilegia oxysepala HOM05D005876 ORTHO05D007326 6.3e-58 228.8 314 42.7
PSO063G1014 Papaver somniferum HOM05D005876 ORTHO05D007326 1.5e-56 224.2 250 52.0
HPP92_026974 Vanilla planifolia HOM05D005876 ORTHO05D007326 2.6e-56 223.4 306 41.5
Duzib106G1607 Durio zibethinus HOM05D005876 ORTHO05D007326 7.7e-56 221.9 246 51.2
AUR62040047 Chenopodium quinoa HOM05D005876 ORTHO05D007326 3.8e-55 219.5 280 47.1
Zm00001eb290190 Zea mays HOM05D005876 ORTHO05D007326 3.2e-54 216.5 307 42.7
Peaxi162Scf01604g00016 Petunia axillaris HOM05D005876 ORTHO05D007326 4.8e-50 202.6 273 42.5
Ah.16g107680 Amaranthus hybridus HOM05D005876 ORTHO05D007326 2.9e-47 193.4 245 49.0
Nitab4.5_0000669g0240 Nicotiana tabacum HOM05D005876 ORTHO05D007326 9.4e-46 188.3 206 48.5
TAR636G2100 Trochodendron aralioides HOM05D005876 ORTHO05D007326 1.2e-45 188.0 132 63.6
SHI12568 Sapria himalayana HOM05D005876 ORTHO05D007326 4.7e-45 186.0 194 54.1
SEGI_25369 Sequoiadendron giganteum HOM05D005876 ORTHO05D007326 6.1e-45 185.7 227 43.2
Glyma.01G229300 Glycine max HOM05D005876 ORTHO05D007326 6.8e-44 182.2 124 69.4
Oeu060085.1 Olea europaea HOM05D005876 ORTHO05D007326 2.8e-42 176.8 285 41.8
Gorai.004G066200 Gossypium raimondii HOM05D005876 ORTHO05D007326 7.7e-40 168.7 108 75.0
Zm00001eb270830 Zea mays HOM05D005876 ORTHO05D007326 3.2e-38 163.3 312 36.5
Pp3c22_13580 Physcomitrium patens HOM05D005876 ORTHO05D007326 2.7e-37 160.2 220 44.1
PGR083G2396 Punica granatum HOM05D005876 ORTHO05D007326 1.0e-36 158.3 248 41.1
Nitab4.5_0002614g0010 Nicotiana tabacum HOM05D005876 ORTHO05D007326 1.4e-36 157.9 296 36.8
Sc15g0002680 Simmondsia chinensis HOM05D005876 ORTHO05D007326 8.3e-34 148.7 203 46.3
Psat4g011240 Pisum sativum HOM05D005876 ORTHO05D007326 5.4e-33 146.0 102 66.7
unitig_32.g11040 Utricularia gibba HOM05D005876 ORTHO05D007326 1.2e-32 144.8 106 63.2
AagrBONN_evm.TU.Sc2ySwM_117.3742 Anthoceros agrestis HOM05D005876 ORTHO05D007326 3.3e-30 136.7 263 33.8
Mapoly0065s0033 Marchantia polymorpha HOM05D005876 ORTHO05D007326 3.6e-29 133.3 283 31.1
TPR.G5312 Trifolium pratense HOM05D005876 ORTHO05D007326 2.2e-26 124.0 119 52.1
Dinv08367 Davidia involucrata HOM05D005876 ORTHO05D007326 1.2e-24 118.2 65 83.1
Dinv35712 Davidia involucrata HOM05D005876 ORTHO05D007326 1.2e-24 118.2 65 83.1
PGSC0003DMG400004235 Solanum tuberosum HOM05D005876 ORTHO05D007326 7.8e-24 115.5 280 32.1
SMO302G0051 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 1.1e-22 111.7 275 29.1
Zm00001eb286610 Zea mays HOM05D005876 ORTHO05D007326 1.9e-22 110.9 119 50.4
TPR.G5314 Trifolium pratense HOM05D000002 ORTHO05D000047 4.9e-18 96.3 72 61.1
SMO353G0015 Selaginella moellendorffii HOM05D005876 ORTHO05D007326 2.7e-16 90.5 274 25.9
Oeu029421.1 Olea europaea HOM05D005876 ORTHO05D007326 1.1e-14 85.1 87 52.9
CBR_g48398 Chara braunii HOM05D005876 ORTHO05D007326 1.7e-10 71.2 129 34.1
Cfa025603 Carpinus fangiana HOM05D005876 ORTHO05D007326 1.6e-08 64.7 151 26.5


User provided reference genes

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