Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 5.9e-115 418.7 466 100.0
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 2.8e-85 320.1 366 81.7
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 4.1e-84 316.2 474 80.8
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 3.8e-82 309.7 365 77.5
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 1.9e-81 307.4 365 70.4
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.6e-75 287.7 372 63.4
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 4.6e-75 286.2 374 75.4
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 8.6e-74 282.0 374 77.0
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 4.3e-73 279.6 375 76.0
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 9.5e-73 278.5 379 76.3
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 2.8e-72 276.9 377 61.8
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.0e-71 275.0 378 62.2
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 1.4e-71 274.6 373 55.5
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 9.8e-70 268.5 368 54.9
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 1.3e-69 268.1 371 77.6
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 4.9e-69 266.2 364 67.0
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 3.2e-68 263.5 366 63.4
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 1.6e-67 261.2 374 61.0
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 3.5e-67 260.0 369 60.2
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.3e-66 257.3 375 52.8
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 1.1e-65 255.0 366 58.2
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 2.5e-65 253.8 370 68.9
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 2.5e-65 253.8 389 56.3
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 3.3e-65 253.4 374 55.1
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 7.3e-65 252.3 369 53.7
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 7.3e-65 252.3 378 71.7
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 9.5e-65 251.9 373 53.6
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 2.1e-64 250.8 377 58.4
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 4.7e-64 249.6 374 58.8
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 6.2e-64 249.2 372 63.4
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 1.4e-63 248.1 376 62.2
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 1.4e-63 248.1 381 65.6
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 1.8e-63 247.7 372 60.8
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 2.3e-63 247.3 389 55.8
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 1.2e-62 245.0 369 52.6
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 1.2e-62 245.0 389 56.3
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 1.2e-62 245.0 386 59.6
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 2.0e-62 244.2 373 43.4
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 3.4e-62 243.4 369 49.1
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 5.8e-62 242.7 373 66.5
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 3.7e-61 240.0 368 53.8
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 4.9e-61 239.6 372 57.0
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 8.3e-61 238.8 370 55.9
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 1.1e-60 238.4 395 52.2
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 3.2e-60 236.9 363 59.5
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 3.2e-60 236.9 372 51.1
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.2e-59 235.0 370 68.4
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 1.2e-59 235.0 370 68.4
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 2.7e-59 233.8 330 56.7
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 3.5e-59 233.4 377 51.5
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 6.0e-59 232.6 367 59.9
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 7.8e-59 232.3 375 60.3
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 1.0e-58 231.9 369 47.4
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 1.0e-58 231.9 376 67.3
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 1.3e-58 231.5 373 68.1
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 2.3e-58 230.7 368 49.5
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.1e-58 229.6 375 50.9
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 6.6e-58 229.2 365 54.2
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 1.1e-57 228.4 366 47.5
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 1.5e-57 228.0 370 55.1
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 2.5e-57 227.3 377 56.5
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 3.3e-57 226.9 369 51.2
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 4.3e-57 226.5 366 57.9
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 7.3e-57 225.7 400 61.8
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 9.5e-57 225.3 144 80.6
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 1.2e-56 224.9 373 57.6
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 2.1e-56 224.2 374 64.7
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 2.8e-56 223.8 369 45.5
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 3.6e-56 223.4 372 50.5
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 3.6e-56 223.4 372 50.8
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 3.6e-56 223.4 387 54.8
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 4.7e-56 223.0 400 54.5
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 6.2e-56 222.6 367 44.1
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 8.1e-56 222.2 367 53.7
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.1e-55 221.9 371 60.6
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 4.0e-55 219.9 372 47.3
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 4.0e-55 219.9 372 60.8
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 8.9e-55 218.8 370 43.2
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.5e-54 218.0 356 55.1
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 4.4e-54 216.5 363 65.0
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 7.6e-54 215.7 391 59.8
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 9.9e-54 215.3 361 52.1
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 9.9e-54 215.3 418 59.8
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 1.3e-53 214.9 374 49.7
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 1.3e-53 214.9 373 55.2
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 1.3e-53 214.9 332 62.7
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 1.3e-53 214.9 401 62.6
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.7e-53 214.5 366 56.6
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 2.9e-53 213.8 370 62.2
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 3.7e-53 213.4 378 42.1
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 3.7e-53 213.4 369 49.6
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 4.9e-53 213.0 368 63.3
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 4.9e-53 213.0 367 56.4
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 8.4e-53 212.2 387 60.5
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 5.4e-52 209.5 350 59.7
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 1.2e-51 208.4 372 47.3
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 3.5e-51 206.8 369 59.3
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 4.6e-51 206.5 262 59.2
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 6.0e-51 206.1 390 48.7
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 1.3e-50 204.9 400 55.5
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.7e-50 204.5 373 53.4
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.3e-50 204.1 342 60.5
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 3.9e-50 203.4 369 45.3
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 3.9e-50 203.4 366 49.7
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 5.1e-50 203.0 367 49.3
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 1.1e-49 201.8 268 50.4
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 1.9e-49 201.1 141 74.5
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.9e-49 201.1 402 48.0
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 4.3e-49 199.9 370 45.7
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 6.2e-48 196.1 367 45.5
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 8.1e-48 195.7 332 52.4
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 1.1e-47 195.3 352 56.8
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 1.4e-47 194.9 389 51.9
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 6.8e-47 192.6 374 48.4
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 2.6e-46 190.7 341 58.9
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.3e-45 188.3 257 51.0
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 1.7e-45 188.0 97 86.6
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 6.4e-45 186.0 368 65.5
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 8.4e-45 185.7 363 55.4
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.4e-44 184.1 407 48.4
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 3.2e-44 183.7 390 46.9
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.2e-44 183.7 367 56.7
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.2e-44 183.7 367 56.7
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 9.3e-44 182.2 363 55.4
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 2.1e-43 181.0 405 48.1
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.1e-42 176.4 366 48.1
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 1.5e-41 174.9 340 53.2
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 9.6e-41 172.2 268 52.6
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 3.6e-40 170.2 378 36.0
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 5.3e-39 166.4 140 64.3
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 9.0e-39 165.6 146 63.7
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.2e-38 165.2 205 51.7
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 2.0e-38 164.5 140 64.3
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 3.4e-38 163.7 105 70.5
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 1.7e-37 161.4 140 63.6
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 1.1e-33 148.7 330 46.7
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 6.2e-32 142.9 187 49.7
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 8.1e-32 142.5 326 34.0
Actinidia23208 Actinidia chinensis HOM05D002034 ORTHO05D006399 7.9e-27 125.9 101 64.4
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 1.6e-24 118.2 81 70.4
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 2.1e-24 117.9 292 46.6
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 9.0e-23 112.5 85 67.1
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 3.4e-22 110.5 85 64.7
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 2.2e-21 107.8 75 73.3
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 1.1e-20 105.5 261 36.4
C02p11700 Brassica napus HOM05D002034 ORTHO05D006399 5.5e-20 103.2 50 90.0
MCO15G578 Micromonas commoda HOM05D002034 ORTHO05D000124 2.7e-19 100.9 113 45.1
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 1.8e-18 98.2 265 44.9
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 7.2e-12 76.3 264 42.8
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 3.0e-10 70.9 38 78.9
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 5.1e-10 70.1 67 59.7
vmacro16010 Vaccinium macrocarpon HOM05D005264 ORTHO05D005428 9.7e-09 65.9 92 42.4
Lsat_1_v5_gn_3_32780 Lactuca sativa HOM05D005264 ORTHO05D005428 2.8e-08 64.3 92 40.2
CSS0010634 Camellia sinensis var. sinensis HOM05D005264 ORTHO05D005428 1.4e-07 62.0 105 38.1
HanXRQChr06g0171921 Helianthus annuus HOM05D005264 ORTHO05D005428 1.8e-07 61.6 92 39.1
HanXRQChr17g0540751 Helianthus annuus HOM05D005264 ORTHO05D005428 3.1e-07 60.8 92 37.0
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 6.9e-07 59.7 36 63.9
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 1.2e-06 58.9 119 34.5
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 1.5e-06 58.5 39 61.5
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 1.5e-06 58.5 36 63.9
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 2.0e-06 58.2 36 63.9
Lalb_Chr04g0258911 Lupinus albus HOM05D005264 ORTHO05D005428 2.0e-06 58.2 92 39.1
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 2.6e-06 57.8 38 60.5
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 3.4e-06 57.4 35 65.7
Phvul.011G032100 Phaseolus vulgaris HOM05D005264 ORTHO05D005428 3.4e-06 57.4 39 61.5
Sabra10G0130200 Salix brachista HOM05D005264 ORTHO05D005428 3.4e-06 57.4 92 37.0
SGA_v2.0_scaffold42G15896 Striga asiatica HOM05D005264 ORTHO05D005428 3.4e-06 57.4 36 66.7
VMungo1127G0108 Vigna mungo HOM05D005264 ORTHO05D005428 3.4e-06 57.4 39 61.5
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 5.9e-06 56.6 92 34.8
THA.LOC104826521 Tarenaya hassleriana HOM05D005264 ORTHO05D005428 5.9e-06 56.6 36 63.9
ClCG10G015380 Citrullus lanatus HOM05D005264 ORTHO05D005428 7.7e-06 56.2 104 38.5
PSO063G3914 Papaver somniferum HOM05D005264 ORTHO05D005428 7.7e-06 56.2 36 63.9
PSO782G4655 Papaver somniferum HOM05D005264 ORTHO05D005428 7.7e-06 56.2 36 63.9
Sp1g37140 Schrenkiella parvula HOM05D005264 ORTHO05D005428 7.7e-06 56.2 36 63.9
SEGI_41358 Sequoiadendron giganteum HOM05D005264 ORTHO05D005428 7.7e-06 56.2 36 61.1


User provided reference genes

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