Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 2.3e-157 558.9 300 100.0
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 7.3e-151 537.3 301 97.3
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.5e-148 529.6 307 95.4
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 7.1e-146 520.8 274 96.7
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 1.3e-144 516.5 301 92.7
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 5.1e-144 514.6 303 92.4
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 5.1e-144 514.6 305 91.8
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 5.1e-144 514.6 273 94.9
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 1.1e-143 513.5 301 89.0
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 3.3e-143 511.9 273 94.5
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 3.3e-143 511.9 301 94.0
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 4.7e-142 508.1 301 87.7
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 6.2e-142 507.7 303 92.1
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 6.2e-142 507.7 301 87.7
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 1.1e-141 506.9 301 86.4
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 1.1e-141 506.9 301 86.4
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.1e-141 506.9 301 87.7
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.8e-141 506.1 301 84.4
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.2e-141 504.6 300 88.0
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 5.2e-141 504.6 272 93.0
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 5.2e-141 504.6 273 93.0
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 6.8e-141 504.2 301 90.7
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 1.2e-140 503.4 273 92.7
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 1.2e-140 503.4 301 92.7
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.0e-140 502.7 305 86.6
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 2.0e-140 502.7 273 92.3
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 2.6e-140 502.3 301 91.0
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 7.6e-140 500.7 302 88.7
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 9.9e-140 500.4 301 89.0
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 1.7e-139 499.6 274 92.3
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 2.9e-139 498.8 304 88.8
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 6.4e-139 497.7 304 88.5
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 8.4e-139 497.3 273 90.5
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 2.4e-138 495.7 272 93.0
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 3.2e-138 495.4 273 91.2
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 3.2e-138 495.4 273 90.8
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 4.2e-138 495.0 272 91.9
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.1e-138 494.2 301 83.4
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.7e-137 492.3 274 92.0
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.5e-137 491.9 301 84.1
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.6e-137 491.5 304 88.5
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 7.8e-137 490.7 273 89.0
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.3e-136 490.0 307 88.3
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 2.3e-136 489.2 272 89.7
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 2.3e-136 489.2 272 89.7
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 1.1e-135 486.9 274 89.8
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 1.9e-135 486.1 273 88.3
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 4.3e-135 485.0 273 89.7
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 4.3e-135 485.0 268 90.3
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 9.6e-135 483.8 273 89.0
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 9.6e-135 483.8 274 88.3
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 9.6e-135 483.8 301 83.1
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.6e-134 483.0 275 89.1
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.1e-134 482.6 301 83.7
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 1.8e-133 479.6 273 86.4
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.4e-133 479.2 302 81.5
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 5.3e-133 478.0 301 81.4
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 5.8e-132 474.6 301 84.7
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 7.6e-132 474.2 274 85.8
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 2.2e-131 472.6 272 84.9
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 8.4e-131 470.7 301 80.1
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 8.4e-131 470.7 304 85.2
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 1.9e-130 469.5 299 79.6
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 2.4e-130 469.2 289 82.0
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 3.2e-130 468.8 299 79.3
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 4.2e-130 468.4 300 81.0
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 5.4e-130 468.0 273 86.1
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 1.2e-129 466.8 297 83.8
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 6.0e-129 464.5 273 84.6
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 7.9e-129 464.2 301 78.7
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 1.7e-128 463.0 273 82.4
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 2.3e-128 462.6 344 72.1
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 5.1e-128 461.5 277 84.5
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 5.1e-128 461.5 277 84.5
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 1.1e-127 460.3 273 83.5
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 1.9e-127 459.5 282 82.3
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 2.5e-127 459.1 275 84.4
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 2.5e-127 459.1 301 81.1
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 5.6e-127 458.0 320 75.3
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 6.2e-126 454.5 297 78.8
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 6.2e-126 454.5 273 83.2
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.1e-125 453.8 273 82.8
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 1.4e-125 453.4 274 82.8
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 2.4e-125 452.6 282 83.3
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 3.1e-125 452.2 274 82.5
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 3.1e-125 452.2 274 82.5
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 9.0e-125 450.7 310 76.8
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 1.2e-124 450.3 273 83.2
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 2.6e-124 449.1 275 81.1
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 3.4e-124 448.7 273 81.7
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 3.4e-124 448.7 310 75.5
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 4.5e-124 448.4 281 81.1
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 1.3e-123 446.8 341 76.0
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 7.1e-122 441.0 273 82.4
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 7.1e-122 441.0 273 82.4
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 9.3e-122 440.7 273 82.1
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 1.2e-121 440.3 309 73.5
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.7e-121 439.1 302 74.5
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 3.5e-121 438.7 296 77.0
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 1.3e-120 436.8 272 82.0
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 4.3e-119 431.8 264 77.3
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 1.6e-118 429.9 276 77.5
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 2.1e-118 429.5 276 77.9
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 1.1e-117 427.2 280 80.7
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 5.3e-117 424.9 301 71.8
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 2.6e-116 422.5 303 71.6
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 1.2e-113 413.7 233 90.1
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 6.0e-113 411.4 222 92.8
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 3.7e-110 402.1 257 87.2
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.6e-108 396.0 264 73.9
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.9e-103 379.8 275 72.4
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 1.9e-103 379.8 275 72.4
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 5.7e-103 378.3 272 74.3
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 5.3e-101 371.7 276 72.5
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 7.2e-98 361.3 205 88.8
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.8e-96 356.7 254 70.9
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.4e-95 351.3 239 72.0
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 1.0e-91 340.9 280 62.9
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 8.5e-91 337.8 206 84.0
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.1e-89 333.2 246 69.9
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 5.1e-88 328.6 211 79.6
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 5.1e-88 328.6 284 60.6
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 2.6e-87 326.2 267 64.4
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 2.2e-86 323.2 278 60.4
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 1.4e-85 320.5 295 58.3
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 9.1e-85 317.8 181 89.5
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.1e-82 310.8 214 70.1
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 4.7e-81 305.4 190 81.6
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.7e-78 297.0 181 82.9
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 2.9e-75 286.2 262 57.6
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 5.7e-71 271.9 246 64.6
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 1.7e-67 260.4 147 91.2
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 8.8e-64 248.1 190 67.9
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 8.9e-48 194.9 96 95.8
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.6e-47 193.4 124 79.8
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 3.4e-47 193.0 104 87.5
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 3.7e-46 189.5 116 84.5
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 3.0e-43 179.9 123 74.0
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 7.3e-42 175.3 259 41.7
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 3.6e-41 172.9 104 81.7
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 4.4e-39 166.0 122 73.0
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.1e-37 161.4 78 98.7
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 1.2e-36 157.9 94 80.9
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 1.6e-33 147.5 106 71.7
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 4.0e-32 142.9 111 80.2
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 8.9e-32 141.7 268 32.5
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 2.6e-31 140.2 246 39.8
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 2.4e-29 133.7 257 34.6
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 9.2e-29 131.7 185 43.8
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 2.1e-28 130.6 117 62.4
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 2.1e-28 130.6 117 62.4
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 3.5e-28 129.8 117 63.2
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 3.5e-28 129.8 246 33.3
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 6.0e-28 129.0 104 68.3
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 7.8e-28 128.6 117 61.5
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 1.3e-27 127.9 66 90.9
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 3.9e-27 126.3 117 61.5
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 4.3e-26 122.9 117 60.7
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 9.6e-26 121.7 117 59.8
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 4.9e-22 109.4 154 40.9
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 8.4e-22 108.6 86 65.1
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 4.2e-21 106.3 154 41.6
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 1.7e-19 100.9 82 64.6
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 4.0e-16 89.7 73 68.5
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 2.2e-14 84.0 46 80.4
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 9.3e-13 78.6 71 62.0


User provided reference genes

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