Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 2407.1 1203 100.0
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 2192.5 1205 90.5
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1989.9 1200 81.9
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1951.8 1207 80.5
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1949.5 1207 80.2
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1947.2 1207 80.4
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1872.1 1172 77.9
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1861.7 1205 75.6
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1858.6 1193 75.5
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1844.7 1196 75.4
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1827.0 1199 74.7
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1817.0 1207 74.1
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1798.9 1207 73.5
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1798.9 1191 73.1
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1789.6 1193 73.5
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1788.9 1195 73.0
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1787.7 1196 73.4
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1785.0 1027 86.2
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1781.5 1204 72.1
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1781.1 1204 72.3
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1773.4 1245 71.0
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1765.0 1193 72.5
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1763.4 1204 71.3
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1761.1 1189 72.2
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1759.2 1208 72.0
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1749.9 1207 71.2
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1744.6 1207 71.3
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1742.2 1208 71.0
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 1737.2 1205 70.6
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 1729.1 1190 71.1
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 1722.6 1205 70.5
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1720.7 1195 70.4
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 1719.5 1189 70.2
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1716.4 1190 70.2
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 1716.0 1206 69.5
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1707.2 1196 70.2
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1706.0 1217 68.6
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 1703.7 1190 70.0
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1701.4 1192 69.5
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1699.5 1199 69.3
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 1697.9 1190 69.3
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1689.9 1196 69.1
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1687.9 1195 69.0
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1685.6 1312 64.9
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1682.9 1194 69.3
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1674.1 1180 68.6
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1671.8 1196 69.1
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1666.0 1198 68.9
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1665.6 1195 67.9
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1663.3 1206 68.6
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1659.8 1191 67.4
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1657.9 1200 66.9
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1655.6 1201 66.9
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1654.8 1192 67.4
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1651.0 1193 67.2
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1650.6 1192 66.9
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1647.9 1194 66.5
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1643.6 1197 67.6
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1640.9 1197 66.2
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1639.8 1191 66.8
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1633.6 1206 67.2
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1627.1 1132 70.1
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1627.1 1196 65.9
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1624.4 1193 66.1
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1615.9 1193 65.8
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1614.7 1186 66.0
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1614.4 1203 65.4
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1613.6 1188 67.0
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1611.3 1174 67.5
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1609.3 1199 66.6
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1604.7 1217 64.8
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1600.9 1198 66.2
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1599.3 1200 65.1
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1596.3 1197 66.1
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1594.3 1241 63.4
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1587.0 1203 64.4
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1584.7 1200 64.8
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1584.3 1203 64.3
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1578.1 1206 64.1
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1567.0 1190 63.9
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1552.7 1250 61.3
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1546.2 1156 65.1
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1544.3 1264 61.2
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1541.2 1207 63.3
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1540.0 1193 64.1
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1537.7 1199 63.6
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1525.4 1199 63.1
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1522.3 1189 62.3
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1508.4 1241 60.8
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1479.5 1191 60.6
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1464.1 1285 58.6
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1450.3 1031 69.6
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1443.7 971 73.1
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1395.9 1194 58.2
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1394.0 1206 57.1
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1390.6 1193 61.8
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1379.0 1195 56.7
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1340.9 988 67.3
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1324.3 1189 57.9
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1302.3 1195 57.3
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1293.5 844 76.1
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1253.4 1204 54.7
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1229.5 857 73.3
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1206.4 1198 50.8
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1195.6 1223 50.0
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1180.2 1226 50.9
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1137.5 1182 48.1
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 4.5e-300 1035.0 760 65.9
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 1.0e-299 1033.9 711 71.0
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 3.9e-280 968.8 717 67.1
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 3.6e-257 892.5 1068 43.5
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 6.8e-240 835.1 1100 42.5
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 2.2e-238 830.1 1183 42.9
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 3.9e-235 819.3 581 68.2
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 2.6e-207 726.9 754 53.3
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 3.6e-201 706.4 489 70.1
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 9.0e-200 701.8 572 63.3
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 9.0e-192 675.2 490 67.3
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 2.2e-174 617.5 386 78.5
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 1.7e-145 521.5 591 49.4
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 7.0e-144 516.2 412 63.1
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 1.3e-129 468.8 715 39.0
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 1.7e-97 362.1 373 51.2
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 1.1e-96 359.4 259 64.5
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 9.6e-77 293.1 276 57.2
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 2.2e-65 255.4 175 72.0
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 4.3e-61 241.1 201 62.2
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 4.5e-58 231.1 301 41.2
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 4.3e-53 214.5 291 39.9
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 4.1e-51 208.0 238 50.0
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 1.0e-49 203.4 141 71.6
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 1.3e-28 133.3 167 46.1
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 3.5e-26 125.2 152 51.3
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 9.1e-19 100.5 72 61.1
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 6.8e-14 84.3 202 29.7
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 2.2e-12 79.3 60 71.7
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 6.3e-12 77.8 322 23.0
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 3.2e-11 75.5 78 50.0
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 5.9e-10 71.2 47 74.5
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 5.0e-09 68.2 52 57.7
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 2.5e-08 65.9 44 70.5
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 1.2e-07 63.5 45 62.2
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 1.6e-07 63.2 93 40.9
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 2.8e-07 62.4 89 42.7
A09p25680 Brassica napus HOM05D005254 ORTHO05D100756 6.8e-06 57.8 24 91.7


User provided reference genes

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