Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1278200 Malus domestica HOM05D004582 ORTHO05D005507 1.2e-67 259.6 120 100.0
MD17G1271200 Malus domestica HOM05D004582 ORTHO05D005507 3.2e-65 251.5 120 95.0
Gohir.A04G109900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.7e-56 221.9 115 84.3
Gohir.D04G150100 Gossypium hirsutum HOM05D004582 ORTHO05D005507 2.7e-56 221.9 115 84.3
Gorai.012G136700 Gossypium raimondii HOM05D004582 ORTHO05D005507 2.7e-56 221.9 115 84.3
Manes.01G004880 Manihot esculenta HOM05D004582 ORTHO05D005507 4.6e-56 221.1 115 83.5
Prupe.3G015100 Prunus persica HOM05D004582 ORTHO05D005507 4.6e-56 221.1 118 84.7
Duzib248G0155 Durio zibethinus HOM05D004582 ORTHO05D005507 6.0e-56 220.7 115 83.5
THA.LOC104819361 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 7.9e-56 220.3 115 86.1
CANSAT78G1495 Cannabis sativa HOM05D004582 ORTHO05D005507 2.3e-55 218.8 113 84.1
Ciclev10017231m.g Citrus clementina HOM05D004582 ORTHO05D005507 3.0e-55 218.4 113 84.1
Cfa005243 Carpinus fangiana HOM05D004582 ORTHO05D005507 6.7e-55 217.2 115 82.6
Sed0002882 Sechium edule HOM05D004582 ORTHO05D005507 8.7e-55 216.9 115 80.9
Actinidia04370 Actinidia chinensis HOM05D004582 ORTHO05D005507 1.1e-54 216.5 117 81.2
THA.LOC104800345 Tarenaya hassleriana HOM05D004582 ORTHO05D005507 1.1e-54 216.5 115 84.3
CiPaw.06G093300 Carya illinoinensis HOM05D004582 ORTHO05D005507 1.9e-54 215.7 115 82.6
MELO3C023752.2 Cucumis melo HOM05D004582 ORTHO05D005507 1.9e-54 215.7 115 80.9
CsaV3_3G020290 Cucumis sativus L. HOM05D004582 ORTHO05D005507 1.9e-54 215.7 115 80.9
Thecc.02G151700 Theobroma cacao HOM05D004582 ORTHO05D005507 1.9e-54 215.7 115 81.7
Solyc04g008750.3 Solanum lycopersicum HOM05D004582 ORTHO05D005507 2.5e-54 215.3 115 80.9
Sopen04g003930 Solanum pennellii HOM05D004582 ORTHO05D005507 2.5e-54 215.3 115 80.9
PGSC0003DMG400025297 Solanum tuberosum HOM05D004582 ORTHO05D005507 3.3e-54 214.9 115 80.9
vmacro00989 Vaccinium macrocarpon HOM05D004582 ORTHO05D005507 5.7e-54 214.2 112 83.9
GSVIVG01034346001 Vitis vinifera HOM05D004582 ORTHO05D005507 5.7e-54 214.2 113 82.3
CSS0028000 Camellia sinensis var. sinensis HOM05D004582 ORTHO05D005507 7.4e-54 213.8 112 83.0
Potri.010G255000 Populus trichocarpa HOM05D004582 ORTHO05D005507 9.7e-54 213.4 115 80.9
Eucgr.G02614 Eucalyptus grandis HOM05D004582 ORTHO05D005507 1.6e-53 212.6 113 84.1
Sed0027851 Sechium edule HOM05D004582 ORTHO05D005507 1.6e-53 212.6 115 80.0
Atru.chr11.27 Acer truncatum HOM05D004582 ORTHO05D005507 2.2e-53 212.2 113 81.4
TWI15G0512 Tripterygium wilfordii HOM05D004582 ORTHO05D005507 2.2e-53 212.2 113 82.3
Ca_16312_v3 Cicer arietinum L. HOM05D004582 ORTHO05D005507 2.8e-53 211.8 113 83.2
Peaxi162Scf00329g00317 Petunia axillaris HOM05D004582 ORTHO05D005507 3.7e-53 211.5 112 82.1
MD04G1047800 Malus domestica HOM05D004582 ORTHO05D005507 4.8e-53 211.1 114 79.8
Gohir.D13G059000 Gossypium hirsutum HOM05D004582 ORTHO05D005507 6.3e-53 210.7 113 80.5
Potri.008G002400 Populus trichocarpa HOM05D004582 ORTHO05D005507 8.2e-53 210.3 115 80.0
Gohir.A13G062900 Gossypium hirsutum HOM05D004582 ORTHO05D005507 1.1e-52 209.9 113 79.6
Carub.0006s0753 Capsella rubella HOM05D004582 ORTHO05D005507 1.4e-52 209.5 113 83.2
CAN.G419.18 Capsicum annuum HOM05D004582 ORTHO05D005507 1.4e-52 209.5 112 81.2
Glyma.17G000400 Glycine max HOM05D004582 ORTHO05D005507 1.4e-52 209.5 113 82.3
PGR142G2001 Punica granatum HOM05D004582 ORTHO05D005507 1.4e-52 209.5 117 78.6
Hma1.2p1_2673F.1_g326700 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.8e-52 209.1 110 82.7
Phvul.003G004200 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 1.8e-52 209.1 113 82.3
SalBow6G5789 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.8e-52 209.1 112 81.2
SalBow8G4318 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.8e-52 209.1 112 81.2
FvH4_4g10630 Fragaria vesca HOM05D004582 ORTHO05D005507 2.4e-52 208.8 115 78.3
FAN07G0418 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.4e-52 208.8 115 78.3
FAN12G0218 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.4e-52 208.8 115 78.3
FAN12G1626 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.4e-52 208.8 115 78.3
FAN17G0627 Fragaria x ananassa HOM05D004582 ORTHO05D005507 2.4e-52 208.8 115 78.3
MSTRG.25043 Avicennia marina HOM05D004582 ORTHO05D005507 3.1e-52 208.4 110 82.7
RcHm_v2.0_Chr4g0406241 Rosa chinensis HOM05D004582 ORTHO05D005507 3.1e-52 208.4 115 78.3
VMungo0251G1823 Vigna mungo HOM05D000329 ORTHO05D002813 3.1e-52 208.4 113 82.3
Aa31LG10G11080 Aethionema arabicum HOM05D004582 ORTHO05D005507 4.1e-52 208.0 113 81.4
Aa31LG1G18160 Aethionema arabicum HOM05D004582 ORTHO05D005507 4.1e-52 208.0 113 81.4
BcaB07g29700 Brassica carinata HOM05D004582 ORTHO05D005507 4.1e-52 208.0 115 80.0
AT5G08565 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 5.3e-52 207.6 113 82.3
BcaC03g18219 Brassica carinata HOM05D004582 ORTHO05D005507 5.3e-52 207.6 115 79.1
A02p42940 Brassica napus HOM05D004582 ORTHO05D005507 5.3e-52 207.6 115 79.1
C02p62880 Brassica napus HOM05D004582 ORTHO05D005507 5.3e-52 207.6 115 79.1
BraA02t09217Z Brassica rapa HOM05D004582 ORTHO05D005507 5.3e-52 207.6 115 79.1
SGA_v2.0_scaffold231G43443 Striga asiatica HOM05D004582 ORTHO05D005507 5.3e-52 207.6 112 80.4
Aa31LG3G17960 Aethionema arabicum HOM05D004582 ORTHO05D005507 6.9e-52 207.2 113 81.4
Cc11_g00370 Coffea canephora HOM05D004582 ORTHO05D005507 6.9e-52 207.2 112 81.2
Phvul.001G068300 Phaseolus vulgaris HOM05D004582 ORTHO05D005507 6.9e-52 207.2 113 81.4
Glyma.07G274100 Glycine max HOM05D004582 ORTHO05D005507 9.0e-52 206.8 113 81.4
AL6G19290 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 1.2e-51 206.5 113 80.5
Lalb_Chr10g0094681 Lupinus albus HOM05D004582 ORTHO05D005507 1.2e-51 206.5 115 80.0
Sp2g26760 Schrenkiella parvula HOM05D004582 ORTHO05D005507 1.2e-51 206.5 115 79.1
Migut.N02765 Erythranthe guttata HOM05D004582 ORTHO05D005507 1.5e-51 206.1 112 81.2
Lj6g0014483 Lotus japonicus HOM05D004582 ORTHO05D005507 1.5e-51 206.1 112 82.1
Thhalv10005155m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 2.6e-51 205.3 115 78.3
MSTRG.1036 Avicennia marina HOM05D004582 ORTHO05D005507 3.4e-51 204.9 112 79.5
Carub.0008s2444 Capsella rubella HOM05D004582 ORTHO05D005507 3.4e-51 204.9 115 79.1
HanXRQChr15g0475831 Helianthus annuus HOM05D004582 ORTHO05D005507 3.4e-51 204.9 112 80.4
Lsat_1_v5_gn_1_108541 Lactuca sativa HOM05D004582 ORTHO05D005507 3.4e-51 204.9 112 80.4
Hund08683 Selenicereus undatus HOM05D004582 ORTHO05D005507 3.4e-51 204.9 115 79.1
ATR0693G307 Amborella trichopoda HOM05D004582 ORTHO05D005507 7.7e-51 203.8 112 79.5
ECA246G1034 Erigeron canadensis HOM05D004582 ORTHO05D005507 1.0e-50 203.4 117 75.2
TAR629G2421 Trochodendron aralioides HOM05D004582 ORTHO05D005507 1.0e-50 203.4 112 78.6
AL8G40820 Arabidopsis lyrata HOM05D004582 ORTHO05D005507 1.7e-50 202.6 115 78.3
AT5G63670 Arabidopsis thaliana HOM05D004582 ORTHO05D005507 1.7e-50 202.6 115 78.3
CARHR278210 Cardamine hirsuta HOM05D004582 ORTHO05D005507 1.7e-50 202.6 115 77.4
MBI11_g25051_MAGBIO Magnolia biondii HOM05D004582 ORTHO05D005507 1.7e-50 202.6 112 80.4
unitig_749.g13837 Utricularia gibba HOM05D004582 ORTHO05D005507 1.7e-50 202.6 112 76.8
Sc06g0007770 Simmondsia chinensis HOM05D004582 ORTHO05D005507 2.2e-50 202.2 112 80.4
TPR.G31176 Trifolium pratense HOM05D004582 ORTHO05D005507 2.2e-50 202.2 111 79.3
Nitab4.5_0000129g0010 Nicotiana tabacum HOM05D004582 ORTHO05D005507 3.8e-50 201.4 114 78.1
Nn8g39808 Nelumbo nucifera HOM05D004582 ORTHO05D005507 6.5e-50 200.7 118 78.0
BcaB01g05582 Brassica carinata HOM05D004582 ORTHO05D005507 1.4e-49 199.5 112 77.7
Medtr3g092730 Medicago truncatula HOM05D004582 ORTHO05D005507 1.4e-49 199.5 113 79.6
Medtr3g092770 Medicago truncatula HOM05D004582 ORTHO05D005507 1.4e-49 199.5 113 79.6
BcaB01g05655 Brassica carinata HOM05D004582 ORTHO05D005507 1.9e-49 199.1 112 77.7
A03p03980 Brassica napus HOM05D004582 ORTHO05D005507 1.9e-49 199.1 112 77.7
C03p04450 Brassica napus HOM05D004582 ORTHO05D005507 1.9e-49 199.1 112 77.7
Psat5g071960 Pisum sativum HOM05D004582 ORTHO05D005507 2.5e-49 198.7 113 77.9
Sp6g34300 Schrenkiella parvula HOM05D004582 ORTHO05D005507 2.5e-49 198.7 113 77.0
HPP92_027251 Vanilla planifolia HOM05D004582 ORTHO05D005507 7.2e-49 197.2 112 75.9
Aqoxy5G02794 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 9.4e-49 196.8 115 75.7
Gorai.013G066800 Gossypium raimondii HOM05D004582 ORTHO05D005507 9.4e-49 196.8 149 61.7
FAN22G0072 Fragaria x ananassa HOM05D004582 ORTHO05D005507 1.2e-48 196.4 113 77.0
Aqoxy3G01747 Aquilegia oxysepala HOM05D004582 ORTHO05D005507 4.6e-48 194.5 115 73.9
Hma1.2p1_1901F.1_g307030 Hydrangea macrophylla HOM05D004582 ORTHO05D005507 1.0e-47 193.4 103 81.6
Duzib132G0727 Durio zibethinus HOM05D004582 ORTHO05D005507 1.4e-47 193.0 98 86.7
SEGI_05202 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 1.4e-47 193.0 110 73.6
Os07g0623400 Oryza sativa ssp. japonica HOM05D004582 ORTHO05D005507 2.3e-47 192.2 112 73.2
Atru.chr6.1863 Acer truncatum HOM05D004582 ORTHO05D005507 6.7e-47 190.7 98 85.7
Cfa008860 Carpinus fangiana HOM05D002331 ORTHO05D002624 8.8e-47 190.3 99 84.8
ClCG05G012130 Citrullus lanatus HOM05D004582 ORTHO05D005507 1.5e-46 189.5 98 84.7
PSO541G0162 Papaver somniferum HOM05D004582 ORTHO05D005507 1.5e-46 189.5 113 74.3
PSO675G8561 Papaver somniferum HOM05D004582 ORTHO05D005507 1.5e-46 189.5 113 74.3
PSO339G5842 Papaver somniferum HOM05D004582 ORTHO05D005507 2.0e-46 189.1 113 74.3
HanXRQChr01g0026751 Helianthus annuus HOM05D004582 ORTHO05D005507 3.3e-46 188.3 118 67.8
Atru.chr11.31 Acer truncatum HOM05D004582 ORTHO05D005507 7.4e-46 187.2 98 83.7
HanXRQChr01g0026901 Helianthus annuus HOM05D004582 ORTHO05D005507 7.4e-46 187.2 110 71.8
COL.COLO4_33156 Corchorus olitorius HOM05D004582 ORTHO05D005507 1.3e-45 186.4 98 81.6
AUR62032890 Chenopodium quinoa HOM05D004582 ORTHO05D005507 1.1e-44 183.3 114 73.7
SGA_v2.0_scaffold417G51254 Striga asiatica HOM05D004582 ORTHO05D005507 1.8e-44 182.6 95 83.2
DCAR_026806 Daucus carota HOM05D004582 ORTHO05D005507 6.9e-44 180.6 95 82.1
SalBow6G4393 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.5e-43 179.5 115 67.0
SalBow8G4232 Salvia bowleyana HOM05D004582 ORTHO05D005507 1.5e-43 179.5 115 67.0
CDE07G1374 Ceratophyllum demersum HOM05D004582 ORTHO05D005507 1.0e-42 176.8 95 82.1
AagrBONN_evm.TU.Sc2ySwM_344.5487 Anthoceros agrestis HOM05D004582 ORTHO05D005507 1.3e-42 176.4 107 70.1
BolC2t12361H Brassica oleracea HOM05D004582 ORTHO05D005507 2.5e-41 172.2 126 64.3
SGA_v2.0_scaffold14G06942 Striga asiatica HOM05D004582 ORTHO05D005507 9.4e-41 170.2 143 55.2
Pp3c6_2640 Physcomitrium patens HOM05D004582 ORTHO05D005507 1.2e-40 169.9 107 66.4
Dinv17660 Davidia involucrata HOM05D004582 ORTHO05D005507 4.7e-40 167.9 84 86.9
SMO358G0649 Selaginella moellendorffii HOM05D004582 ORTHO05D005507 6.1e-40 167.5 116 64.7
Mapoly0092s0011 Marchantia polymorpha HOM05D004582 ORTHO05D005507 1.4e-39 166.4 111 64.9
Mapoly0166s0006 Marchantia polymorpha HOM05D004582 ORTHO05D005507 1.4e-39 166.4 107 68.2
Ah.11g040470 Amaranthus hybridus HOM05D004582 ORTHO05D005507 1.7e-37 159.5 147 55.1
QL03p073673 Quercus lobata HOM05D004582 ORTHO05D005507 6.3e-37 157.5 116 62.1
Oeu002508.1 Olea europaea HOM05D004582 ORTHO05D005507 1.4e-36 156.4 79 84.8
CARHR204400 Cardamine hirsuta HOM05D004582 ORTHO05D005507 4.1e-36 154.8 97 72.2
Oeu039967.1 Olea europaea HOM05D004582 ORTHO05D005507 2.6e-35 152.1 79 83.5
CiPaw.05G123600 Carya illinoinensis HOM05D004582 ORTHO05D005507 6.5e-34 147.5 77 87.0
ATR0772G012 Amborella trichopoda HOM05D004582 ORTHO05D005507 2.5e-33 145.6 74 83.8
EL10Ac9g23021 Beta vulgaris HOM05D004582 ORTHO05D005507 5.5e-33 144.4 74 83.8
Thhalv10015347m.g Eutrema salsugineum HOM05D004582 ORTHO05D005507 3.6e-32 141.7 75 82.7
SEGI_39424 Sequoiadendron giganteum HOM05D004582 ORTHO05D005507 3.3e-30 135.2 75 76.0
MCO11G500 Micromonas commoda HOM05D004582 ORTHO05D005507 1.1e-28 130.2 106 49.1
CBR_g44398 Chara braunii HOM05D004582 ORTHO05D005507 4.1e-28 128.3 92 56.5
Sabra10G0198500 Salix brachista HOM05D004582 ORTHO05D005507 1.6e-27 126.3 102 66.7
PRCOL_00005197 Prasinoderma coloniale HOM05D004582 ORTHO05D005507 6.5e-26 120.9 99 49.5
Sc06g0007290 Simmondsia chinensis HOM05D004582 ORTHO05D005507 2.7e-24 115.5 95 62.1
MD07G1114100 Malus domestica HOM05D004582 ORTHO05D005507 2.0e-22 109.4 58 84.5
Nitab4.5_0008730g0050 Nicotiana tabacum HOM05D004582 ORTHO05D005507 2.6e-22 109.0 76 68.4
Nitab4.5_0000129g0060 Nicotiana tabacum HOM05D004582 ORTHO05D005507 3.1e-20 102.1 76 63.2
Lj5g0002326 Lotus japonicus HOM05D004582 ORTHO05D005507 1.2e-19 100.1 63 68.3
Lj5g0003678 Lotus japonicus HOM05D004582 ORTHO05D005507 1.2e-19 100.1 63 68.3
Lj5g0005298 Lotus japonicus HOM05D004582 ORTHO05D005507 1.2e-19 100.1 63 68.3
Cre02.g116300 Chlamydomonas reinhardtii HOM05D004582 ORTHO05D005507 9.4e-17 90.5 105 39.0
BcaB01g05656 Brassica carinata HOM05D000467 ORTHO05D000379 8.0e-16 87.4 56 71.4
Haze_26483 Corylus avellana HOM05D004582 ORTHO05D005507 1.4e-15 86.7 88 39.8
Haze_11883 Corylus avellana HOM05D004582 ORTHO05D005507 1.8e-15 86.3 79 59.5
Rhsim12G0090000 Rhododendron simsii HOM05D004582 ORTHO05D005507 6.8e-15 84.3 166 36.1
Lsat_1_v5_gn_1_108420 Lactuca sativa HOM05D004582 ORTHO05D005507 6.3e-13 77.8 39 87.2
Cfa023443 Carpinus fangiana HOM05D004582 ORTHO05D123741 8.3e-13 77.4 83 41.0
Cpa.g.sc887.1 Carica papaya HOM05D004582 ORTHO05D005507 1.3e-10 70.1 37 78.4
Nitab4.5_0011163g0030 Nicotiana tabacum HOM05D004582 ORTHO05D005507 4.2e-09 65.1 76 47.4


User provided reference genes

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