Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 4.7e-274 947.2 464 100.0
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 4.3e-227 791.2 482 82.6
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 1.6e-221 772.7 475 81.7
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.1e-221 770.8 473 81.8
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 6.3e-218 760.8 508 76.4
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 2.0e-216 755.7 515 75.1
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 2.0e-208 729.2 484 74.6
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 3.5e-208 728.4 484 74.0
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 5.0e-207 724.5 482 75.3
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 8.5e-207 723.8 481 74.4
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 2.7e-205 718.8 480 75.2
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.8e-204 716.1 480 73.8
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 6.7e-204 714.1 482 73.4
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 3.7e-202 708.4 482 73.9
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 3.7e-202 708.4 427 83.1
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 4.8e-202 708.0 483 72.5
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 6.3e-202 707.6 482 74.1
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.4e-201 706.4 484 72.9
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 2.0e-200 702.6 483 72.5
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 5.9e-200 701.0 480 71.5
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 7.7e-200 700.7 479 73.1
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 1.3e-199 699.9 480 71.5
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 1.3e-199 699.9 479 72.9
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 1.3e-199 699.9 558 65.1
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 1.7e-199 699.5 478 73.2
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.7e-199 699.5 482 72.8
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 8.5e-199 697.2 459 75.4
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 1.2e-197 693.3 483 71.4
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.6e-197 693.0 480 71.5
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 6.1e-197 691.0 482 72.0
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 6.1e-197 691.0 482 72.0
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 4.0e-196 688.3 479 69.7
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 3.4e-195 685.3 484 71.1
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 1.4e-193 679.9 483 69.8
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 1.4e-193 679.9 480 70.8
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 4.1e-193 678.3 482 69.7
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 4.1e-193 678.3 482 69.5
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 2.0e-192 676.0 480 69.8
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.3e-191 673.3 482 69.7
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.3e-191 673.3 482 69.7
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 2.9e-191 672.2 483 69.4
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 5.0e-191 671.4 476 69.5
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 1.5e-190 669.8 481 69.6
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.7e-189 665.6 479 71.2
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 6.1e-189 664.5 483 67.7
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 5.2e-188 661.4 481 68.8
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 1.3e-186 656.8 480 67.9
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 1.7e-186 656.4 481 68.6
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 8.3e-186 654.1 480 68.8
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 1.8e-185 652.9 483 67.7
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 3.1e-185 652.1 486 68.1
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 7.0e-185 651.0 482 68.7
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 7.0e-185 651.0 479 68.9
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 1.2e-184 650.2 481 67.4
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 1.2e-184 650.2 483 67.7
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.2e-184 650.2 483 67.9
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 2.0e-184 649.4 480 68.8
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 5.9e-184 647.9 479 68.9
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 2.3e-183 646.0 481 67.6
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 2.9e-183 645.6 437 72.8
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 3.8e-183 645.2 479 68.3
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 5.0e-183 644.8 481 67.6
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 2.5e-182 642.5 482 66.6
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 5.6e-182 641.3 479 66.4
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 7.2e-182 641.0 477 68.6
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 5.2e-180 634.8 495 65.9
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 1.4e-177 626.7 482 64.5
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 4.1e-177 625.2 483 64.4
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 9.2e-177 624.0 490 64.3
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 1.2e-176 623.6 479 66.2
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 1.2e-176 623.6 489 64.6
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 1.7e-175 619.8 483 61.9
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 3.9e-175 618.6 490 63.9
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 8.6e-175 617.5 480 65.0
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 5.6e-174 614.8 506 62.1
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 1.6e-173 613.2 480 64.4
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 3.4e-171 605.5 478 64.0
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 7.5e-171 604.4 512 61.1
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 8.3e-170 600.9 531 59.3
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 5.4e-169 598.2 456 66.7
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 3.5e-168 595.5 495 63.2
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.5e-166 590.1 493 63.3
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 7.3e-166 587.8 483 61.9
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 3.4e-163 578.9 483 61.9
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 9.8e-163 577.4 483 59.4
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 4.6e-160 568.5 479 61.2
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 1.1e-158 563.9 483 58.6
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 1.9e-150 536.6 350 77.4
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 3.6e-149 532.3 480 57.3
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 4.0e-148 528.9 279 92.8
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.1e-145 520.8 425 64.0
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.1e-145 520.8 425 64.0
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 3.3e-142 509.2 496 53.6
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.4e-132 477.2 491 51.1
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 1.2e-131 474.2 318 74.8
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 4.5e-131 472.2 481 53.0
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 4.2e-129 465.7 312 72.4
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 9.6e-126 454.5 515 46.4
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 1.6e-125 453.8 325 73.8
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-125 453.8 477 49.5
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 6.9e-124 448.4 483 48.9
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 2.6e-123 446.4 549 44.3
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.2e-121 439.5 471 49.3
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 7.1e-121 438.3 471 49.0
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.3e-119 433.3 471 49.3
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.1e-117 426.8 471 49.3
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 8.4e-114 414.8 315 66.7
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 1.9e-105 387.1 359 57.9
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.8e-95 354.0 261 69.3
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 5.7e-94 349.0 299 63.2
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.3e-92 342.4 473 41.0
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 5.5e-89 332.4 490 42.0
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.6e-86 323.6 296 55.1
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.7e-83 313.5 396 44.9
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.7e-80 303.5 299 52.2
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 1.6e-67 261.2 403 39.0
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 2.9e-66 256.9 137 83.9
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-65 254.6 272 48.9
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 1.0e-63 248.4 140 81.4
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 3.4e-62 243.4 497 33.2
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-61 240.7 483 33.1
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 5.6e-57 226.1 146 77.4
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 3.4e-54 216.9 271 45.0
TPR.G2943 Trifolium pratense HOM05D004739 ORTHO05D005784 2.3e-50 204.1 169 62.7
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 4.7e-40 169.9 110 77.3
CARHR037970 Cardamine hirsuta HOM05D004739 ORTHO05D005784 6.2e-40 169.5 154 59.7
CSS0043638 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 8.1e-40 169.1 148 59.5
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.1e-39 167.2 190 46.8
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-37 161.0 140 53.6
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 9.6e-33 145.6 514 25.9
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 5.2e-31 139.8 379 29.6
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.2e-30 138.7 109 67.9
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 8.4e-29 132.5 96 67.7
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 2.4e-28 131.0 84 73.8
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 3.3e-25 120.6 86 67.4
SHI06489 Sapria himalayana HOM05D004739 ORTHO05D000023 7.3e-25 119.4 135 48.1
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 2.1e-24 117.9 105 61.9
Lj6P350T22 Lonicera japonica HOM05D004739 ORTHO05D005784 2.8e-24 117.5 121 52.1
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 8.1e-24 115.9 83 75.9
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 1.9e-20 104.8 68 73.5
SMO331G0066 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.9e-15 86.3 145 33.1
CBR_g7993 Chara braunii HOM05D004739 ORTHO05D005784 4.5e-14 83.6 106 37.7
Prupe.1G176800 Prunus persica HOM05D000257 ORTHO05D009310 6.0e-11 73.2 116 42.2
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.1e-10 70.1 115 36.5
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 6.7e-10 69.7 77 48.1
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 3.7e-08 63.9 82 45.1


User provided reference genes

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