Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1159100 Malus domestica HOM05D003534 ORTHO05D022234 1.5e-65 252.7 125 100.0
MD05G1064300 Malus domestica HOM05D003534 ORTHO05D004911 1.8e-34 149.4 94 78.7
MD10G1073000 Malus domestica HOM05D003534 ORTHO05D004911 3.0e-34 148.7 94 77.7
Prupe.8G094400 Prunus persica HOM05D003534 ORTHO05D004911 3.0e-34 148.7 94 77.7
FAN15G3506 Fragaria x ananassa HOM05D003534 ORTHO05D004911 1.1e-31 140.2 93 72.0
FAN20G2815 Fragaria x ananassa HOM05D003534 ORTHO05D004911 1.1e-31 140.2 93 72.0
FvH4_2g09160 Fragaria vesca HOM05D003534 ORTHO05D004911 1.4e-31 139.8 93 71.0
FAN27G1894 Fragaria x ananassa HOM05D003534 ORTHO05D004911 1.4e-31 139.8 93 72.0
FAN24G0084 Fragaria x ananassa HOM05D003534 ORTHO05D004911 2.4e-31 139.0 93 71.0
RcHm_v2.0_Chr6g0265021 Rosa chinensis HOM05D003534 ORTHO05D004911 7.8e-30 134.0 93 68.8
MELO3C023306.2 Cucumis melo HOM05D003534 ORTHO05D004911 2.8e-27 125.6 94 62.8
ClCG11G004310 Citrullus lanatus HOM05D003534 ORTHO05D004911 6.1e-27 124.4 94 61.7
CsaV3_2G014840 Cucumis sativus L. HOM05D003534 ORTHO05D004911 8.0e-27 124.0 94 61.7
CANSAT01G2206 Cannabis sativa HOM05D003534 ORTHO05D004911 1.8e-26 122.9 93 59.1
Lj3g0020150 Lotus japonicus HOM05D003534 ORTHO05D004911 4.0e-26 121.7 94 57.4
Sabra09G0090700 Salix brachista HOM05D003534 ORTHO05D004911 8.9e-26 120.6 94 60.6
SEGI_37147 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 1.2e-25 120.2 94 58.5
SEGI_39025 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 1.2e-25 120.2 94 58.5
SEGI_39659 Sequoiadendron giganteum HOM05D003534 ORTHO05D004911 1.2e-25 120.2 94 58.5
Hund20114 Selenicereus undatus HOM05D003534 ORTHO05D004911 1.5e-25 119.8 94 56.4
CAN.G259.5 Capsicum annuum HOM05D003534 ORTHO05D004911 2.6e-25 119.0 94 58.5
Ciclev10027844m.g Citrus clementina HOM05D003534 ORTHO05D004911 2.6e-25 119.0 94 59.6
Eucgr.I01280 Eucalyptus grandis HOM05D003534 ORTHO05D004911 2.6e-25 119.0 94 61.7
Manes.04G089300 Manihot esculenta HOM05D003534 ORTHO05D004911 2.6e-25 119.0 94 59.6
CSS0034094 Camellia sinensis var. sinensis HOM05D003534 ORTHO05D004911 3.4e-25 118.6 94 58.5
Solyc11g020810.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 4.4e-25 118.2 94 58.5
Sopen11g010770 Solanum pennellii HOM05D003534 ORTHO05D004911 4.4e-25 118.2 94 58.5
Sed0008343 Sechium edule HOM05D003534 ORTHO05D004911 5.8e-25 117.9 94 59.6
TWI79G0037 Tripterygium wilfordii HOM05D003534 ORTHO05D004911 5.8e-25 117.9 94 57.4
PGSC0003DMG400009279 Solanum tuberosum HOM05D003534 ORTHO05D004911 7.5e-25 117.5 94 56.4
vmacro02092 Vaccinium macrocarpon HOM05D003534 ORTHO05D004911 9.8e-25 117.1 94 57.4
Cfa004983 Carpinus fangiana HOM05D003534 ORTHO05D004911 1.3e-24 116.7 94 56.4
Rhsim11G0178800 Rhododendron simsii HOM05D003534 ORTHO05D004911 1.3e-24 116.7 94 57.4
Actinidia00534 Actinidia chinensis HOM05D003534 ORTHO05D004911 2.2e-24 115.9 94 57.4
arahy.Tifrunner.gnm1.ann1.32LR34 Arachis hypogaea HOM05D003534 ORTHO05D004911 2.2e-24 115.9 94 54.3
arahy.Tifrunner.gnm1.ann1.HU7T3D Arachis hypogaea HOM05D003534 ORTHO05D004911 2.2e-24 115.9 94 54.3
Lalb_Chr01g0002481 Lupinus albus HOM05D003534 ORTHO05D004911 2.2e-24 115.9 94 53.2
Lalb_Chr03g0025601 Lupinus albus HOM05D003534 ORTHO05D004911 2.2e-24 115.9 94 53.2
QL11p044502 Quercus lobata HOM05D003534 ORTHO05D004911 2.2e-24 115.9 89 60.7
Thecc.02G083000 Theobroma cacao HOM05D003534 ORTHO05D004911 2.2e-24 115.9 94 55.3
SalBow3G2606 Salvia bowleyana HOM05D003534 ORTHO05D004911 2.9e-24 115.5 94 58.5
VMungo1127G1107 Vigna mungo HOM05D003534 ORTHO05D004911 2.9e-24 115.5 94 55.3
Lj4C693T2 Lonicera japonica HOM05D003534 ORTHO05D004911 3.7e-24 115.2 94 56.4
PGR142G3854 Punica granatum HOM05D003534 ORTHO05D004911 3.7e-24 115.2 94 58.5
Potri.009G118400 Populus trichocarpa HOM05D003534 ORTHO05D004911 4.9e-24 114.8 94 59.6
THA.LOC104807735 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 4.9e-24 114.8 93 55.9
Gohir.D02G216500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 6.4e-24 114.4 94 54.3
Solyc11g020820.2 Solanum lycopersicum HOM05D003534 ORTHO05D004911 6.4e-24 114.4 94 56.4
Carub.0007s1523 Capsella rubella HOM05D003534 ORTHO05D004911 1.1e-23 113.6 93 55.9
Duzib132G0318 Durio zibethinus HOM05D003534 ORTHO05D004911 1.1e-23 113.6 94 54.3
Migut.N01247 Erythranthe guttata HOM05D003534 ORTHO05D004911 1.1e-23 113.6 94 57.4
Gohir.A03G195500 Gossypium hirsutum HOM05D003534 ORTHO05D004911 1.1e-23 113.6 94 54.3
Gorai.005G244600 Gossypium raimondii HOM05D003534 ORTHO05D004911 1.1e-23 113.6 94 54.3
Sp7g23760 Schrenkiella parvula HOM05D003534 ORTHO05D004911 1.1e-23 113.6 93 54.8
CiPaw.05G066400 Carya illinoinensis HOM05D003534 ORTHO05D004911 1.4e-23 113.2 94 56.4
COL.COLO4_25956 Corchorus olitorius HOM05D003534 ORTHO05D004911 1.4e-23 113.2 94 54.3
GSVIVG01023801001 Vitis vinifera HOM05D003534 ORTHO05D004911 1.4e-23 113.2 94 56.4
Phvul.011G044300 Phaseolus vulgaris HOM05D003534 ORTHO05D004911 1.9e-23 112.8 94 53.2
TPR.G22546 Trifolium pratense HOM05D003534 ORTHO05D004911 1.9e-23 112.8 94 54.3
Cpa.g.c31087 Carica papaya HOM05D003534 ORTHO05D004911 2.4e-23 112.5 94 56.4
Cpa.g.sc62.164 Carica papaya HOM05D003534 ORTHO05D004911 2.4e-23 112.5 94 56.4
Glyma.12G042600 Glycine max HOM05D003534 ORTHO05D004911 2.4e-23 112.5 94 55.3
Nn3g20273 Nelumbo nucifera HOM05D003534 ORTHO05D004911 2.4e-23 112.5 93 55.9
Hma1.2p1_0617F.1_g190140 Hydrangea macrophylla HOM05D003534 ORTHO05D004911 3.2e-23 112.1 94 57.4
MBI16_g05475_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D004911 3.2e-23 112.1 93 54.8
Oeu011084.1 Olea europaea HOM05D003534 ORTHO05D004911 3.2e-23 112.1 94 56.4
Peaxi162Scf00391g00525 Petunia axillaris HOM05D003534 ORTHO05D004911 3.2e-23 112.1 94 55.3
THA.LOC104804130 Tarenaya hassleriana HOM05D003534 ORTHO05D004911 4.1e-23 111.7 93 53.8
Aa31sc389G50 Aethionema arabicum HOM05D003534 ORTHO05D004911 5.4e-23 111.3 93 53.8
Aqoxy3G00729 Aquilegia oxysepala HOM05D003534 ORTHO05D004911 5.4e-23 111.3 93 53.8
MSTRG.27693 Avicennia marina HOM05D003534 ORTHO05D004911 5.4e-23 111.3 94 54.3
Ca_20885_v3 Cicer arietinum L. HOM05D003534 ORTHO05D004911 5.4e-23 111.3 94 55.3
Medtr4g070380 Medicago truncatula HOM05D003534 ORTHO05D004911 5.4e-23 111.3 94 55.3
Psat7g184360 Pisum sativum HOM05D003534 ORTHO05D004911 5.4e-23 111.3 93 53.8
TAR376G0939 Trochodendron aralioides HOM05D003534 ORTHO05D004911 5.4e-23 111.3 93 53.8
DCAR_001567 Daucus carota HOM05D003534 ORTHO05D004911 1.2e-22 110.2 93 55.9
Medtr4g078640 Medicago truncatula HOM05D003534 ORTHO05D004911 1.2e-22 110.2 94 54.3
Nn8g40768 Nelumbo nucifera HOM05D003534 ORTHO05D004911 1.2e-22 110.2 93 54.8
AUR62037043 Chenopodium quinoa HOM05D003534 ORTHO05D004911 1.6e-22 109.8 93 53.8
AUR62038347 Chenopodium quinoa HOM05D003534 ORTHO05D004911 1.6e-22 109.8 93 53.8
Cc02_g17370 Coffea canephora HOM05D003534 ORTHO05D004911 1.6e-22 109.8 94 55.3
Thhalv10024417m.g Eutrema salsugineum HOM05D003534 ORTHO05D004911 1.6e-22 109.8 92 54.3
Ah.11g039060 Amaranthus hybridus HOM05D003534 ORTHO05D004911 2.0e-22 109.4 93 53.8
AL7G27310 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 2.0e-22 109.4 93 52.7
AT4G25730 Arabidopsis thaliana HOM05D003534 ORTHO05D004911 2.0e-22 109.4 93 52.7
EL10Ac2g03296 Beta vulgaris HOM05D003534 ORTHO05D004911 2.0e-22 109.4 94 53.2
A03p56220 Brassica napus HOM05D003534 ORTHO05D004911 2.0e-22 109.4 93 52.7
BraA03t14692Z Brassica rapa HOM05D003534 ORTHO05D004911 2.0e-22 109.4 93 52.7
Nitab4.5_0000167g0310 Nicotiana tabacum HOM05D003534 ORTHO05D004911 2.0e-22 109.4 94 55.3
PSO675G9373 Papaver somniferum HOM05D003534 ORTHO05D004911 2.0e-22 109.4 101 50.5
Glyma.11G116800 Glycine max HOM05D003534 ORTHO05D004911 2.7e-22 109.0 93 53.8
Lsat_1_v5_gn_5_119261 Lactuca sativa HOM05D003534 ORTHO05D004911 2.7e-22 109.0 94 53.2
Nitab4.5_0006725g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 2.7e-22 109.0 108 46.3
CDE08G0557 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 3.5e-22 108.6 93 53.8
SGA_v2.0_scaffold58G20518 Striga asiatica HOM05D003534 ORTHO05D004911 3.5e-22 108.6 93 55.9
BcaC07g38209 Brassica carinata HOM05D003534 ORTHO05D004911 6.0e-22 107.8 93 51.6
BolC8t48630H Brassica oleracea HOM05D003534 ORTHO05D004911 6.0e-22 107.8 93 51.6
Dinv23505 Davidia involucrata HOM05D003534 ORTHO05D004911 6.0e-22 107.8 94 54.3
A08p21010 Brassica napus HOM05D003534 ORTHO05D004911 7.8e-22 107.5 93 50.5
CDE06G1392 Ceratophyllum demersum HOM05D003534 ORTHO05D004911 7.8e-22 107.5 93 52.7
Nitab4.5_0007066g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 7.8e-22 107.5 95 49.5
AUR62041501 Chenopodium quinoa HOM05D003534 ORTHO05D004911 1.0e-21 107.1 93 52.7
C08p09620 Brassica napus HOM05D003534 ORTHO05D004911 1.3e-21 106.7 93 50.5
HanXRQChr12g0376181 Helianthus annuus HOM05D003534 ORTHO05D004911 1.3e-21 106.7 93 52.7
Nitab4.5_0003010g0010 Nicotiana tabacum HOM05D003534 ORTHO05D004911 1.3e-21 106.7 94 54.3
Oeu029149.3 Olea europaea HOM05D003534 ORTHO05D004911 1.3e-21 106.7 94 52.1
PSO541G3604 Papaver somniferum HOM05D003534 ORTHO05D004911 2.3e-21 105.9 100 46.0
PSO675G2831 Papaver somniferum HOM05D003534 ORTHO05D004911 2.3e-21 105.9 100 46.0
Solyc10g046930.3 Solanum lycopersicum HOM05D003534 ORTHO05D004911 2.3e-21 105.9 100 47.0
Sopen10g016730 Solanum pennellii HOM05D003534 ORTHO05D004911 3.0e-21 105.5 100 46.0
Sopen10g016790 Solanum pennellii HOM05D003534 ORTHO05D004911 3.0e-21 105.5 100 46.0
Zm00001eb343980 Zea mays HOM05D003534 ORTHO05D004911 3.0e-21 105.5 91 52.7
CARHR233180 Cardamine hirsuta HOM05D003534 ORTHO05D004911 3.9e-21 105.1 93 51.6
Nitab4.5_0000231g0480 Nicotiana tabacum HOM05D003534 ORTHO05D004911 3.9e-21 105.1 95 48.4
AL6G48970 Arabidopsis lyrata HOM05D003534 ORTHO05D004911 5.0e-21 104.8 95 56.8
C07p54510 Brassica napus HOM05D003534 ORTHO05D004911 5.0e-21 104.8 93 50.5
BolC7t45937H Brassica oleracea HOM05D003534 ORTHO05D004911 5.0e-21 104.8 93 50.5
BraA08t34053Z Brassica rapa HOM05D003534 ORTHO05D004911 5.0e-21 104.8 93 49.5
ATR0568G003 Amborella trichopoda HOM05D003534 ORTHO05D004911 6.6e-21 104.4 94 52.1
AagrBONN_evm.TU.Sc2ySwM_228.187 Anthoceros agrestis HOM05D003534 ORTHO05D004911 6.6e-21 104.4 93 53.8
Mapoly0151s0007 Marchantia polymorpha HOM05D003534 ORTHO05D004911 6.6e-21 104.4 93 52.7
Os05g0567400 Oryza sativa ssp. japonica HOM05D003534 ORTHO05D004911 6.6e-21 104.4 91 52.7
Sc22g0003200 Simmondsia chinensis HOM05D003534 ORTHO05D004911 6.6e-21 104.4 94 51.1
PGSC0003DMG400020972 Solanum tuberosum HOM05D003534 ORTHO05D004911 6.6e-21 104.4 101 44.6
PGSC0003DMG400031553 Solanum tuberosum HOM05D003534 ORTHO05D004911 6.6e-21 104.4 100 45.0
MBI16_g07725_MAGBIO Magnolia biondii HOM05D003534 ORTHO05D000385 8.6e-21 104.0 91 52.7
ATR0579G045 Amborella trichopoda HOM05D003534 ORTHO05D004911 1.1e-20 103.6 94 51.1
ECA234G0458 Erigeron canadensis HOM05D003534 ORTHO05D004911 1.1e-20 103.6 94 48.9
unitig_21.g20784 Utricularia gibba HOM05D003534 ORTHO05D004911 1.1e-20 103.6 90 53.3
Zm00001eb296160 Zea mays HOM05D003534 ORTHO05D004911 1.1e-20 103.6 90 53.3
PSO675G8187 Papaver somniferum HOM05D003534 ORTHO05D004911 7.3e-20 100.9 94 46.8
Pp3c2_28180 Physcomitrium patens HOM05D003534 ORTHO05D004911 1.2e-19 100.1 100 46.0
Pp3c2_28182 Physcomitrium patens HOM05D003534 ORTHO05D004911 1.2e-19 100.1 100 46.0
SMO361G0029 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.4e-18 96.7 93 49.5
SMO361G0155 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.4e-18 96.7 93 49.5
SMO361G0409 Selaginella moellendorffii HOM05D003534 ORTHO05D004911 1.4e-18 96.7 93 49.5
HPP92_017536 Vanilla planifolia HOM05D003534 ORTHO05D004911 1.4e-18 96.7 92 48.9
Os09g0445100 Oryza sativa ssp. japonica HOM05D003534 ORTHO05D004911 3.1e-18 95.5 90 52.2
CANSAT35G1090 Cannabis sativa HOM05D003534 ORTHO05D004911 2.6e-17 92.4 94 46.8
Peaxi162Scf00314g00224 Petunia axillaris HOM05D003534 ORTHO05D004911 4.4e-17 91.7 101 39.6
ClCG11G000160 Citrullus lanatus HOM05D001035 ORTHO05D001045 3.5e-14 82.0 72 55.6
CBR_g6403 Chara braunii HOM05D003534 ORTHO05D004911 1.0e-13 80.5 107 40.2
Sopen11g010760 Solanum pennellii HOM05D003534 ORTHO05D004911 1.7e-13 79.7 67 55.2
PRCOL_00001513 Prasinoderma coloniale HOM05D003534 ORTHO05D004911 3.0e-13 79.0 104 37.5
Cre12.g529500 Chlamydomonas reinhardtii HOM05D003534 ORTHO05D004911 5.1e-13 78.2 93 40.9
MCO16G310 Micromonas commoda HOM05D003534 ORTHO05D004911 1.2e-11 73.6 107 39.3
Haze_26769 Corylus avellana HOM05D003534 ORTHO05D004911 4.7e-11 71.6 94 38.3
BcaB05g23691 Brassica carinata HOM05D003534 ORTHO05D004911 8.1e-11 70.9 94 40.4
Cpa.g.sc84.126 Carica papaya HOM05D003534 ORTHO05D022234 2.3e-10 69.3 58 56.9
Cfa023799 Carpinus fangiana HOM05D003534 ORTHO05D004911 3.1e-10 68.9 92 39.1
AagrBONN_evm.TU.Sc2ySwM_228.235 Anthoceros agrestis HOM05D003534 ORTHO05D004911 2.6e-09 65.9 72 50.0
Carub.0006s3329 Capsella rubella HOM05D003534 ORTHO05D004911 7.5e-09 64.3 94 39.4
Cpa.g.c45708 Carica papaya HOM05D003534 ORTHO05D022234 7.5e-09 64.3 50 60.0
PSO170G1266 Papaver somniferum HOM05D034905 ORTHO05D004911 3.2e-07 58.9 89 37.1
PSO170G1701 Papaver somniferum HOM05D003534 ORTHO05D004911 3.2e-07 58.9 89 37.1
Hma1.2p1_2496F.1_g323320 Hydrangea macrophylla HOM05D003534 ORTHO05D015840 5.4e-07 58.2 59 47.5
CAN.G616.16 Capsicum annuum HOM05D003534 ORTHO05D004911 2.1e-06 56.2 100 32.0
Zm00001eb424120 Zea mays HOM05D003534 ORTHO05D022234 6.0e-06 54.7 53 43.4


User provided reference genes

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