Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 4.3e-236 820.8 387 100.0
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 1.7e-192 676.0 388 81.2
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 1.1e-191 673.3 388 85.3
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 5.5e-191 671.0 387 79.6
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 7.1e-191 670.6 386 80.8
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 1.6e-190 669.5 388 80.4
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 1.8e-189 666.0 387 79.3
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 3.3e-188 661.8 386 79.8
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 7.4e-188 660.6 388 80.2
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 9.6e-188 660.2 387 79.3
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 6.2e-187 657.5 389 77.9
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 1.1e-186 656.8 388 79.1
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 2.4e-186 655.6 388 78.1
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 5.3e-186 654.4 388 79.1
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 3.4e-185 651.7 388 77.8
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 7.6e-185 650.6 388 82.5
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 7.6e-185 650.6 383 77.8
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 6.5e-184 647.5 387 78.6
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 1.1e-183 646.7 388 77.6
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 5.5e-183 644.4 388 77.3
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 6.0e-182 641.0 388 76.8
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.0e-181 640.2 388 78.1
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.0e-181 638.6 365 84.1
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 1.1e-180 636.7 385 77.1
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 4.1e-178 628.2 389 75.3
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 2.0e-177 625.9 388 74.5
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 4.5e-177 624.8 386 74.6
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 3.8e-176 621.7 382 75.1
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 3.8e-176 621.7 382 75.1
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 1.1e-175 620.2 382 75.4
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 1.1e-175 620.2 382 75.4
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 1.9e-175 619.4 382 75.1
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 2.5e-175 619.0 395 74.2
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 2.5e-175 619.0 382 75.4
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.2e-174 616.7 392 77.3
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 1.6e-174 616.3 388 74.0
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 2.1e-174 615.9 387 74.2
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 2.7e-174 615.5 382 75.1
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 2.7e-174 615.5 382 75.1
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 2.7e-174 615.5 382 75.1
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 2.7e-174 615.5 388 75.0
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 3.9e-173 611.7 382 74.9
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 6.7e-173 610.9 382 74.6
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 6.7e-173 610.9 380 75.5
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 1.1e-172 610.1 389 74.0
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 7.4e-172 607.4 391 73.4
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.7e-171 606.3 380 75.0
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 2.8e-171 605.5 388 73.5
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 3.7e-171 605.1 349 79.4
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 6.3e-171 604.4 388 76.0
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 8.2e-171 604.0 386 72.0
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 8.2e-171 604.0 387 73.4
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.1e-170 603.6 380 74.7
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.1e-170 603.6 380 75.0
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 1.1e-170 603.6 386 71.8
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 3.1e-170 602.1 384 74.0
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 6.9e-170 600.9 392 72.4
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 6.9e-170 600.9 427 68.4
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 2.6e-169 599.0 390 70.3
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 7.7e-169 597.4 403 72.0
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 1.3e-168 596.7 388 74.5
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.9e-168 595.5 384 75.3
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 3.8e-168 595.1 389 74.3
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 1.1e-167 593.6 389 72.2
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 2.5e-167 592.4 391 70.8
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 2.5e-167 592.4 387 71.3
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 1.2e-166 590.1 392 70.2
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 3.6e-166 588.6 398 72.4
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 5.1e-165 584.7 397 72.3
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 8.8e-165 583.9 327 82.3
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 2.0e-164 582.8 384 72.4
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 4.4e-164 581.6 347 78.4
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 5.7e-164 581.3 369 75.3
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 5.7e-164 581.3 384 69.3
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 2.8e-163 578.9 388 71.4
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 1.4e-162 576.6 384 68.0
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 3.4e-161 572.0 378 70.9
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 1.0e-160 570.5 421 66.3
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 2.2e-160 569.3 388 70.4
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 6.1e-158 561.2 344 76.5
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 1.4e-157 560.1 387 70.5
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 3.0e-157 558.9 377 69.2
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 5.7e-156 554.7 388 69.8
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 9.7e-156 553.9 393 68.7
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 2.4e-154 549.3 321 79.1
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 7.0e-154 547.7 377 69.0
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 1.1e-151 540.4 368 70.7
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 1.9e-151 539.7 380 67.4
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 9.4e-151 537.3 379 67.0
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 4.7e-150 535.0 344 74.7
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 1.0e-149 533.9 378 68.5
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 1.8e-149 533.1 385 66.5
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 1.2e-148 530.4 385 66.2
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 2.0e-148 529.6 385 66.5
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 3.3e-148 528.9 385 66.5
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 2.2e-147 526.2 385 65.7
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 1.4e-146 523.5 386 65.3
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 2.4e-146 522.7 385 64.9
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.6e-145 520.0 385 64.9
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 2.7e-145 519.2 375 68.0
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 5.9e-145 518.1 385 65.2
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 8.5e-144 514.2 365 69.0
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.2e-142 510.4 388 64.7
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 9.8e-140 500.7 387 63.6
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 9.8e-140 500.7 387 63.6
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 9.8e-140 500.7 291 77.7
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 1.2e-137 493.8 386 60.4
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 7.7e-137 491.1 387 61.2
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 2.8e-134 482.6 385 61.3
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 1.3e-131 473.8 262 82.8
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 3.7e-131 472.2 388 62.1
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 5.6e-127 458.4 290 75.9
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.6e-126 456.8 372 58.3
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 6.1e-126 454.9 266 78.9
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.0e-125 454.1 395 54.7
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 7.0e-122 441.4 395 53.7
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.7e-121 439.5 385 54.8
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 1.5e-119 433.7 389 54.8
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 7.3e-119 431.4 262 74.0
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 6.8e-109 398.3 384 54.4
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 2.4e-106 389.8 313 62.0
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 6.0e-105 385.2 224 79.0
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 9.3e-90 334.7 318 54.1
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 1.9e-82 310.5 545 35.2
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.6e-78 297.4 219 66.2
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 4.0e-77 292.7 220 69.1
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 1.1e-74 284.6 212 65.6
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.3e-72 276.9 147 85.0
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 3.7e-70 269.6 144 84.0
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 1.5e-68 264.2 287 50.9
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 7.9e-65 251.9 153 77.8
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 2.3e-64 250.4 378 37.0
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 1.4e-56 224.6 146 70.5
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 4.1e-53 213.0 143 68.5
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 5.1e-48 196.1 139 66.9
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 3.9e-40 169.9 120 64.2
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 9.7e-39 165.2 284 32.7
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 3.4e-31 140.2 101 65.3
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 1.6e-28 131.3 295 29.8
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 9.8e-23 112.1 146 45.9
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 1.7e-22 111.3 57 78.9
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 2.8e-22 110.5 59 83.1
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 1.6e-20 104.8 66 66.7
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.0e-15 87.8 53 69.8
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 3.7e-14 83.6 101 45.5
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 4.5e-12 76.6 48 72.9
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.3e-11 74.3 64 57.8
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 2.6e-07 60.8 37 70.3


User provided reference genes

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