Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 4.7e-129 464.5 236 100.0
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 1.5e-114 416.4 228 94.3
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 2.1e-108 396.0 227 88.1
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 6.9e-104 380.9 227 84.6
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 1.2e-103 380.2 227 84.1
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-103 380.2 227 84.1
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.2e-102 375.9 227 83.7
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 7.1e-101 370.9 226 82.3
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 4.6e-100 368.2 226 81.9
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 7.4e-98 360.9 225 80.0
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 9.6e-98 360.5 227 78.4
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 3.7e-97 358.6 228 78.1
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 1.1e-96 357.1 225 78.7
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 5.3e-96 354.8 228 77.6
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 5.3e-96 354.8 225 79.6
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 6.0e-92 341.3 227 74.0
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 8.7e-91 337.4 228 74.1
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.5e-90 336.7 325 58.5
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 4.3e-90 335.1 227 72.7
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 2.1e-89 332.8 227 74.4
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 2.1e-89 332.8 227 71.8
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 2.8e-89 332.4 228 71.5
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 3.7e-89 332.0 226 72.6
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 6.2e-89 331.3 226 73.5
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 8.2e-89 330.9 227 71.4
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 8.2e-89 330.9 226 72.6
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 8.2e-89 330.9 226 72.6
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 3.1e-88 328.9 227 70.9
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.5e-87 326.6 221 73.3
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 2.6e-87 325.9 227 71.8
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 2.6e-87 325.9 226 70.8
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 4.5e-87 325.1 227 70.5
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 4.5e-87 325.1 224 73.7
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 2.2e-86 322.8 226 72.6
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 2.9e-86 322.4 227 71.4
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 2.9e-86 322.4 227 71.4
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.4e-85 320.1 221 73.3
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.9e-85 319.7 227 71.4
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.6e-84 316.6 226 69.9
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 2.1e-84 316.2 256 63.7
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 2.1e-84 316.2 226 68.6
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.7e-84 315.8 226 71.2
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 3.5e-84 315.5 226 69.9
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 3.5e-84 315.5 226 69.9
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.8e-83 313.2 234 68.4
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 1.1e-82 310.5 237 67.9
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 1.5e-82 310.1 237 68.4
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 1.9e-82 309.7 227 70.0
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 3.3e-82 308.9 225 68.4
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 4.3e-82 308.5 233 70.8
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 5.7e-82 308.1 237 67.5
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 5.7e-82 308.1 227 69.6
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 9.7e-82 307.4 228 69.3
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.3e-81 307.0 228 68.4
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 1.6e-81 306.6 226 69.9
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.6e-81 306.6 225 68.0
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 1.6e-81 306.6 228 69.7
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 2.2e-81 306.2 227 69.2
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 2.2e-81 306.2 227 69.2
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 2.2e-81 306.2 227 69.2
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 2.8e-81 305.8 227 69.6
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 2.8e-81 305.8 237 67.1
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 2.8e-81 305.8 228 66.7
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 6.3e-81 304.7 226 67.7
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 6.3e-81 304.7 227 68.3
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.1e-80 303.9 228 68.4
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 1.1e-80 303.9 226 68.1
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.8e-80 303.1 237 67.5
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 2.4e-80 302.8 228 67.5
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 3.1e-80 302.4 227 68.3
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 3.1e-80 302.4 225 68.9
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 3.1e-80 302.4 225 68.9
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 1.5e-79 300.1 253 64.8
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.7e-78 296.6 227 67.0
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 2.2e-78 296.2 227 65.6
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 5.0e-78 295.0 209 73.2
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 6.5e-78 294.7 227 65.2
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 8.5e-78 294.3 226 64.6
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 3.2e-77 292.4 227 65.6
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 5.5e-77 291.6 225 65.3
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 5.5e-77 291.6 223 66.4
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 5.5e-77 291.6 223 66.4
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 7.2e-77 291.2 227 67.0
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 1.6e-76 290.0 244 63.1
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 2.1e-76 289.7 225 67.6
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 3.6e-76 288.9 232 66.4
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 3.6e-76 288.9 226 65.9
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 7.9e-76 287.7 243 61.3
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.8e-75 286.6 224 63.8
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 2.3e-75 286.2 227 63.9
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.9e-75 285.4 229 65.1
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 2.5e-74 282.7 227 62.6
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 3.3e-74 282.3 225 64.4
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 7.4e-74 281.2 225 65.3
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 7.4e-74 281.2 221 63.3
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.3e-73 280.4 227 63.0
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.2e-73 279.6 227 63.0
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 2.2e-73 279.6 227 62.6
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 2.8e-73 279.3 227 63.4
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 4.8e-73 278.5 227 61.7
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 4.8e-73 278.5 227 61.7
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 8.2e-73 277.7 231 62.8
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 1.2e-71 273.9 227 61.7
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 5.9e-71 271.6 183 77.0
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 1.0e-70 270.8 226 61.1
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.7e-70 270.0 229 63.8
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 5.0e-70 268.5 227 58.6
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.0e-70 268.5 226 63.3
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.1e-69 267.3 229 63.3
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.9e-69 266.5 226 62.8
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 1.9e-69 266.5 223 63.2
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 4.7e-68 261.9 226 60.6
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 2.3e-67 259.6 229 60.3
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 4.4e-66 255.4 228 57.5
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 5.7e-66 255.0 181 70.7
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 2.2e-65 253.1 228 60.5
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 2.4e-64 249.6 227 59.5
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.2e-63 247.3 165 75.2
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 1.3e-62 243.8 228 54.4
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 3.8e-62 242.3 225 55.1
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 6.1e-60 235.0 235 58.3
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 3.0e-59 232.6 228 53.9
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.1e-58 230.7 229 55.5
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 4.4e-58 228.8 250 51.6
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 7.5e-58 228.0 157 71.3
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 9.7e-58 227.6 226 56.2
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 1.7e-54 216.9 264 49.6
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 4.7e-52 208.8 227 54.2
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 1.7e-49 200.3 204 49.0
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 4.5e-47 192.2 196 51.5
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 9.4e-45 184.5 169 59.2
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 2.7e-44 183.0 172 57.6
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 5.2e-43 178.7 221 48.9
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 6.8e-43 178.3 170 60.6
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 3.4e-42 176.0 131 69.5
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 7.0e-40 168.3 149 59.1
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 7.0e-40 168.3 149 59.1
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.6e-39 167.2 120 70.0
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 4.5e-39 165.6 112 74.1
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.0e-38 162.2 169 54.4
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 2.4e-32 143.3 209 41.6
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.1e-29 134.4 116 64.7
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 1.9e-29 133.7 106 63.2
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 1.0e-27 127.9 186 42.5
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.0e-22 111.3 75 70.7
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 6.6e-22 108.6 73 69.9
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 1.1e-19 101.3 181 38.7
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 2.6e-18 96.7 80 58.8
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 8.3e-17 91.7 73 61.6
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 2.4e-16 90.1 76 59.2
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 1.2e-15 87.8 77 55.8
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 3.5e-15 86.3 58 69.0
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 6.0e-15 85.5 80 52.5
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 4.0e-11 72.8 151 31.8
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 3.4e-10 69.7 56 57.1
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 2.9e-09 66.6 53 58.5
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 6.4e-09 65.5 268 25.7
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.1e-08 64.7 42 73.8
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 1.7e-06 57.4 131 32.1
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 1.7e-06 57.4 78 42.3
CAN.G1077.9 Capsicum annuum HOM05D000222 ORTHO05D012343 2.3e-06 57.0 146 29.5


User provided reference genes

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