Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD08G1162600 Malus domestica HOM05D005358 ORTHO05D006384 3.3e-145 518.5 279 100.0
MD15G1348200 Malus domestica HOM05D005358 ORTHO05D006384 4.7e-136 488.0 279 93.5
Prupe.1G497100 Prunus persica HOM05D005358 ORTHO05D006384 1.4e-132 476.5 280 90.4
FAN15G1035 Fragaria x ananassa HOM05D005358 ORTHO05D006384 2.8e-128 462.2 278 89.2
FAN20G2528 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.6e-128 461.8 278 89.2
FAN27G1910 Fragaria x ananassa HOM05D005358 ORTHO05D006384 8.1e-128 460.7 278 88.8
RcHm_v2.0_Chr6g0295831 Rosa chinensis HOM05D005358 ORTHO05D006384 6.8e-127 457.6 281 88.3
FAN24G1660 Fragaria x ananassa HOM05D005358 ORTHO05D006384 8.9e-127 457.2 278 88.8
CANSAT25G3496 Cannabis sativa HOM05D005358 ORTHO05D006384 6.6e-122 441.0 280 84.6
Sabra02G0065500 Salix brachista HOM05D005358 ORTHO05D006384 9.9e-118 427.2 278 82.4
Gohir.A01G189100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 9.3e-116 420.6 281 80.1
Potri.002G083500 Populus trichocarpa HOM05D005358 ORTHO05D006384 3.5e-115 418.7 279 81.4
Gohir.D01G180400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 7.8e-115 417.5 281 79.7
Gorai.002G222200 Gossypium raimondii HOM05D005358 ORTHO05D006384 7.8e-115 417.5 281 79.7
Duzib093G1131 Durio zibethinus HOM05D005358 ORTHO05D006384 1.7e-114 416.4 279 79.2
COL.COLO4_08077 Corchorus olitorius HOM05D005358 ORTHO05D006384 3.9e-114 415.2 280 78.9
CiPaw.05G221300 Carya illinoinensis HOM05D005358 ORTHO05D006384 5.6e-113 411.4 279 80.6
Thecc.08G125500 Theobroma cacao HOM05D005358 ORTHO05D006384 1.3e-112 410.2 279 79.2
Duzib116G0356 Durio zibethinus HOM05D005358 ORTHO05D006384 1.6e-112 409.8 278 79.1
Gohir.A05G235100 Gossypium hirsutum HOM05D005358 ORTHO05D006384 3.6e-112 408.7 278 78.8
Lj1g0002097 Lotus japonicus HOM05D005358 ORTHO05D006384 3.6e-112 408.7 280 80.7
Gohir.D05G237400 Gossypium hirsutum HOM05D005358 ORTHO05D006384 6.2e-112 407.9 277 79.4
Lalb_Chr11g0065911 Lupinus albus HOM05D005358 ORTHO05D006384 1.1e-111 407.1 278 78.4
Medtr3g088040 Medicago truncatula HOM05D005358 ORTHO05D006384 1.8e-111 406.4 279 80.3
CSS0039743 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.4e-111 406.0 278 80.2
Cfa016019 Carpinus fangiana HOM05D005358 ORTHO05D006384 3.1e-111 405.6 282 79.8
Dinv07219 Davidia involucrata HOM05D005358 ORTHO05D006384 3.1e-111 405.6 280 80.7
Gorai.009G245800 Gossypium raimondii HOM05D005358 ORTHO05D006384 3.1e-111 405.6 277 79.1
CSS0029272 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 9.0e-111 404.1 278 79.9
PGR042G4000 Punica granatum HOM05D005358 ORTHO05D006384 1.5e-110 403.3 283 78.1
TWI34G1827 Tripterygium wilfordii HOM05D005358 ORTHO05D006384 1.5e-110 403.3 279 78.5
FvH4_2g26970 Fragaria vesca HOM05D005358 ORTHO05D006384 3.4e-110 402.1 246 87.0
Cc10_g11890 Coffea canephora HOM05D005358 ORTHO05D006384 4.5e-110 401.7 281 78.3
QL09p034583 Quercus lobata HOM05D005358 ORTHO05D006384 4.5e-110 401.7 273 77.7
Nn5g28290 Nelumbo nucifera HOM05D005358 ORTHO05D006384 5.8e-110 401.4 279 76.7
TAR628G0971 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.3e-109 400.2 279 79.2
CSS0043679 Camellia sinensis var. sinensis HOM05D005358 ORTHO05D006384 2.2e-109 399.4 277 78.7
DCAR_003551 Daucus carota HOM05D005358 ORTHO05D006384 2.2e-109 399.4 280 78.9
GSVIVG01008866001 Vitis vinifera HOM05D005358 ORTHO05D006384 2.9e-109 399.1 279 78.9
Sabra05G0134400 Salix brachista HOM05D005358 ORTHO05D006384 4.9e-109 398.3 279 79.2
arahy.Tifrunner.gnm1.ann1.L9FPHH Arachis hypogaea HOM05D005358 ORTHO05D006384 6.4e-109 397.9 277 80.1
Psat5g087360 Pisum sativum HOM05D005358 ORTHO05D006384 1.1e-108 397.1 277 78.0
Actinidia03469 Actinidia chinensis HOM05D005358 ORTHO05D006384 1.4e-108 396.7 278 78.4
CiPaw.06G031000 Carya illinoinensis HOM05D005358 ORTHO05D006384 1.4e-108 396.7 271 78.6
Eucgr.F03789 Eucalyptus grandis HOM05D005358 ORTHO05D006384 1.4e-108 396.7 282 79.1
TPR.G21057 Trifolium pratense HOM05D005358 ORTHO05D006384 9.3e-108 394.0 277 77.6
Sed0008649 Sechium edule HOM05D005358 ORTHO05D006384 1.2e-107 393.7 282 77.0
MBI16_g07664_MAGBIO Magnolia biondii HOM05D005358 ORTHO05D006384 2.7e-107 392.5 276 75.4
Lj7A340T34 Lonicera japonica HOM05D005358 ORTHO05D006384 1.0e-106 390.6 278 77.0
Lju12250A0T27 Lonicera japonica HOM05D005358 ORTHO05D006384 1.0e-106 390.6 278 77.0
Atru.chr13.1462 Acer truncatum HOM05D005358 ORTHO05D006384 1.8e-106 389.8 282 77.7
Atru.chr13.1484 Acer truncatum HOM05D005358 ORTHO05D006384 1.8e-106 389.8 282 77.7
TAR376G0195 Trochodendron aralioides HOM05D005358 ORTHO05D006384 1.8e-106 389.8 277 76.9
Lsat_1_v5_gn_6_35480 Lactuca sativa HOM05D005358 ORTHO05D006384 5.1e-106 388.3 278 76.6
HanXRQChr02g0053151 Helianthus annuus HOM05D005358 ORTHO05D006384 1.1e-105 387.1 280 77.5
PSO528G0145 Papaver somniferum HOM05D005358 ORTHO05D006384 1.1e-105 387.1 283 76.0
Oeu028563.1 Olea europaea HOM05D005358 ORTHO05D006384 1.5e-105 386.7 278 74.8
Ciclev10002099m.g Citrus clementina HOM05D005358 ORTHO05D006384 3.3e-105 385.6 283 74.9
Glyma.04G249700 Glycine max HOM05D005358 ORTHO05D006384 3.3e-105 385.6 281 78.6
Cpa.g.sc64.88 Carica papaya HOM05D005358 ORTHO05D006384 4.3e-105 385.2 279 78.5
CsaV3_6G034480 Cucumis sativus L. HOM05D005358 ORTHO05D006384 5.6e-105 384.8 282 77.0
MELO3C010608.2 Cucumis melo HOM05D005358 ORTHO05D006384 7.4e-105 384.4 282 77.0
Nitab4.5_0000322g0160 Nicotiana tabacum HOM05D005358 ORTHO05D006384 2.1e-104 382.9 283 74.6
Sc01g0006700 Simmondsia chinensis HOM05D005358 ORTHO05D006384 2.1e-104 382.9 277 72.6
Solyc06g060340.3 Solanum lycopersicum HOM05D005358 ORTHO05D006384 2.8e-104 382.5 285 74.7
Rhsim06G0103300 Rhododendron simsii HOM05D005358 ORTHO05D006384 6.2e-104 381.3 278 77.7
Sopen06g020470 Solanum pennellii HOM05D005358 ORTHO05D006384 6.2e-104 381.3 285 74.4
Glyma.06G113200 Glycine max HOM05D005358 ORTHO05D006384 8.1e-104 380.9 281 78.3
CAN.G1040.10 Capsicum annuum HOM05D005358 ORTHO05D006384 1.1e-103 380.6 287 74.9
ECA233G3168 Erigeron canadensis HOM05D005358 ORTHO05D006384 1.1e-103 380.6 265 78.9
vmacro12532 Vaccinium macrocarpon HOM05D005358 ORTHO05D006384 1.1e-103 380.6 278 75.2
ClCG08G005640 Citrullus lanatus HOM05D005358 ORTHO05D006384 3.1e-103 379.0 282 75.5
THA.LOC104817350 Tarenaya hassleriana HOM05D005358 ORTHO05D006384 4.0e-103 378.6 282 75.2
arahy.Tifrunner.gnm1.ann1.QP7RRL Arachis hypogaea HOM05D005358 ORTHO05D006384 5.3e-103 378.3 277 77.3
PGSC0003DMG400017556 Solanum tuberosum HOM05D005358 ORTHO05D006384 6.9e-103 377.9 285 74.4
Aqoxy6G00218 Aquilegia oxysepala HOM05D005358 ORTHO05D006384 1.5e-102 376.7 281 74.0
HanXRQChr02g0053161 Helianthus annuus HOM05D005358 ORTHO05D006384 1.5e-102 376.7 281 75.4
Migut.C01123 Erythranthe guttata HOM05D005358 ORTHO05D006384 2.0e-102 376.3 280 75.0
Aa31LG6G9330 Aethionema arabicum HOM05D005358 ORTHO05D006384 3.4e-102 375.6 279 74.6
CARHR035950 Cardamine hirsuta HOM05D005358 ORTHO05D006384 4.5e-102 375.2 280 74.3
VMungo1309G1077 Vigna mungo HOM05D005358 ORTHO05D006384 7.6e-102 374.4 277 76.2
ATR0584G037 Amborella trichopoda HOM05D005358 ORTHO05D006384 9.9e-102 374.0 271 74.2
BcaC07g37296 Brassica carinata HOM05D005358 ORTHO05D006384 9.9e-102 374.0 281 74.4
BolC8t47572H Brassica oleracea HOM05D005358 ORTHO05D006384 9.9e-102 374.0 281 74.4
A08p06370 Brassica napus HOM05D005358 ORTHO05D006384 2.9e-101 372.5 280 73.9
BraA08t32644Z Brassica rapa HOM05D005358 ORTHO05D006384 2.9e-101 372.5 280 73.9
BcaB04g17587 Brassica carinata HOM05D005358 ORTHO05D006384 3.8e-101 372.1 279 73.8
C08p07310 Brassica napus HOM05D005358 ORTHO05D006384 4.9e-101 371.7 281 74.0
Carub.0001s3521 Capsella rubella HOM05D005358 ORTHO05D006384 4.9e-101 371.7 279 74.6
AT1G44575 Arabidopsis thaliana HOM05D005358 ORTHO05D006384 6.4e-101 371.3 279 74.2
BcaB07g33947 Brassica carinata HOM05D005358 ORTHO05D006384 6.4e-101 371.3 279 74.2
Oeu059439.1 Olea europaea HOM05D005358 ORTHO05D006384 8.4e-101 370.9 278 73.0
PSO170G3857 Papaver somniferum HOM05D005358 ORTHO05D006384 1.4e-100 370.2 283 74.6
BcaC08g42851 Brassica carinata HOM05D005358 ORTHO05D006384 1.9e-100 369.8 279 73.8
A10p07510 Brassica napus HOM05D005358 ORTHO05D006384 1.9e-100 369.8 279 73.8
C06p00660 Brassica napus HOM05D005358 ORTHO05D006384 1.9e-100 369.8 279 73.8
BraSC36t46054Z Brassica rapa HOM05D005358 ORTHO05D006384 2.4e-100 369.4 277 74.0
BolC6t35202H Brassica oleracea HOM05D005358 ORTHO05D006384 4.2e-100 368.6 280 73.6
Sp1g33560 Schrenkiella parvula HOM05D005358 ORTHO05D006384 1.6e-99 366.7 279 73.8
Phvul.009G125100 Phaseolus vulgaris HOM05D005358 ORTHO05D006384 2.7e-99 365.9 281 75.1
AL1G52370 Arabidopsis lyrata HOM05D005358 ORTHO05D006384 4.6e-99 365.2 274 73.4
SalBow6G1113 Salvia bowleyana HOM05D005358 ORTHO05D006384 2.3e-98 362.8 284 75.0
HPP92_025043 Vanilla planifolia HOM05D005358 ORTHO05D006384 2.3e-98 362.8 276 72.1
CDE02G0325 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.9e-98 362.1 281 71.5
Migut.N03279 Erythranthe guttata HOM05D005358 ORTHO05D006384 3.9e-98 362.1 278 70.9
Os01g0869800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 6.7e-98 361.3 280 72.9
Nitab4.5_0004044g0020 Nicotiana tabacum HOM05D005358 ORTHO05D006384 8.7e-98 360.9 283 72.1
SGA_v2.0_scaffold25G11130 Striga asiatica HOM05D005358 ORTHO05D006384 8.7e-98 360.9 253 78.3
AUR62019079 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.1e-97 360.5 197 91.4
Thhalv10011718m.g Eutrema salsugineum HOM05D005358 ORTHO05D006384 1.6e-96 356.7 279 72.0
Hund26809 Selenicereus undatus HOM05D005358 ORTHO05D006384 2.8e-96 355.9 282 71.6
SEGI_26351 Sequoiadendron giganteum HOM05D005358 ORTHO05D006384 8.1e-96 354.4 239 79.9
MSTRG.22407 Avicennia marina HOM05D005358 ORTHO05D006384 3.1e-95 352.4 280 72.9
unitig_46.g18102 Utricularia gibba HOM05D005358 ORTHO05D006384 6.9e-95 351.3 279 69.5
Os04g0690800 Oryza sativa ssp. japonica HOM05D005358 ORTHO05D006384 6.5e-93 344.7 219 82.2
Peaxi162Scf00051g00910 Petunia axillaris HOM05D005358 ORTHO05D006384 1.9e-92 343.2 281 69.0
Zm00001eb146510 Zea mays HOM05D005358 ORTHO05D006384 1.8e-87 326.6 193 84.5
Pp3c20_23430 Physcomitrium patens HOM05D005358 ORTHO05D006384 1.0e-85 320.9 262 67.9
SMO146G0179 Selaginella moellendorffii HOM05D005358 ORTHO05D006384 8.5e-85 317.8 196 81.1
Mapoly0013s0199 Marchantia polymorpha HOM05D005358 ORTHO05D006384 1.2e-83 313.9 283 62.5
AagrBONN_evm.TU.Sc2ySwM_368.1869 Anthoceros agrestis HOM05D005358 ORTHO05D006384 1.9e-81 306.6 213 73.7
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 1.0e-77 294.3 169 87.6
CDE08G0239 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 3.6e-75 285.8 245 66.9
Manes.18G077312 Manihot esculenta HOM05D005358 ORTHO05D006384 8.8e-74 281.2 197 77.2
Dinv27311 Davidia involucrata HOM05D005358 ORTHO05D006384 7.7e-70 268.1 198 78.3
Ca_16558_v3 Cicer arietinum L. HOM05D005358 ORTHO05D006384 7.9e-67 258.1 202 73.3
Haze_00439 Corylus avellana HOM05D005358 ORTHO05D006384 6.3e-64 248.4 163 80.4
Ah.05g171100 Amaranthus hybridus HOM05D005358 ORTHO05D006384 8.2e-64 248.1 134 93.3
CBR_g29877 Chara braunii HOM05D005358 ORTHO05D006384 1.5e-60 237.3 161 73.3
CBR_g40031 Chara braunii HOM05D005358 ORTHO05D006384 1.6e-54 217.2 163 67.5
EL10Ac1g01011 Beta vulgaris HOM05D005358 ORTHO05D006384 1.7e-53 213.8 276 53.3
Actinidia29466 Actinidia chinensis HOM05D005358 ORTHO05D006384 2.9e-45 186.4 159 71.1
Glyma.13G078900 Glycine max HOM05D004548 ORTHO05D005402 1.1e-44 184.5 231 54.5
CDE06G0290 Ceratophyllum demersum HOM05D005358 ORTHO05D006384 1.5e-41 174.1 125 72.0
EL10Ac5g12375 Beta vulgaris HOM05D005358 ORTHO05D006384 2.4e-39 166.8 96 84.4
Cre01.g016600 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 6.1e-35 152.1 254 42.5
Cre01.g016750 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 6.1e-35 152.1 254 42.5
FAN08G1189 Fragaria x ananassa HOM05D005358 ORTHO05D006384 3.2e-23 113.2 81 80.2
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 2.5e-20 103.6 117 58.1
Cre03.g146147 Chlamydomonas reinhardtii HOM05D005358 ORTHO05D006384 2.8e-11 73.6 141 34.8
PRCOL_00001561 Prasinoderma coloniale HOM05D005358 ORTHO05D006384 8.1e-11 72.0 176 31.2
MELO3C030542.2 Cucumis melo HOM05D005358 ORTHO05D006384 1.7e-08 64.3 35 85.7
MELO3C031367.2 Cucumis melo HOM05D005358 ORTHO05D006384 8.4e-08 62.0 35 85.7
MCO14G314 Micromonas commoda HOM05D005358 ORTHO05D006384 2.4e-07 60.5 60 48.3


User provided reference genes

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