Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1302900 Malus domestica HOM05D005446 ORTHO05D006597 7.6e-74 280.4 141 100.0
MD07G1303100 Malus domestica HOM05D005446 ORTHO05D006597 5.6e-69 264.2 155 89.0
MD01G1231100 Malus domestica HOM05D005446 ORTHO05D006597 3.0e-62 241.9 147 86.4
FvH4_7g33290 Fragaria vesca HOM05D005446 ORTHO05D006597 5.6e-61 237.7 155 76.8
FAN01G0680 Fragaria x ananassa HOM05D005446 ORTHO05D006597 5.6e-61 237.7 155 76.8
FAN10G1830 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.3e-60 236.5 155 76.1
FAN03G2203 Fragaria x ananassa HOM05D005446 ORTHO05D006597 1.1e-59 233.4 155 75.5
RcHm_v2.0_Chr1g0383271 Rosa chinensis HOM05D005446 ORTHO05D006597 1.8e-59 232.6 155 76.1
Prupe.2G321800 Prunus persica HOM05D005446 ORTHO05D006597 6.9e-59 230.7 155 76.8
Cfa016130 Carpinus fangiana HOM05D005446 ORTHO05D006597 4.6e-55 218.0 155 72.9
Haze_23920 Corylus avellana HOM05D005446 ORTHO05D006597 4.6e-55 218.0 155 72.9
RcHm_v2.0_Chr3g0479561 Rosa chinensis HOM05D005446 ORTHO05D006597 7.9e-55 217.2 155 72.9
Haze_00330 Corylus avellana HOM05D005446 ORTHO05D006597 1.8e-54 216.1 155 72.3
Actinidia08718 Actinidia chinensis HOM05D005446 ORTHO05D006597 5.6e-53 211.1 155 69.7
QL09p006048 Quercus lobata HOM05D005446 ORTHO05D006597 1.6e-52 209.5 154 69.5
CiPaw.06G038600 Carya illinoinensis HOM05D005446 ORTHO05D006597 8.1e-52 207.2 155 69.0
TWI18G0511 Tripterygium wilfordii HOM05D005446 ORTHO05D006597 2.4e-51 205.7 155 67.1
COL.COLO4_20178 Corchorus olitorius HOM05D005446 ORTHO05D006597 4.0e-51 204.9 155 67.1
Dinv17279 Davidia involucrata HOM05D005446 ORTHO05D006597 4.0e-51 204.9 155 69.0
Duzib151G0274 Durio zibethinus HOM05D005446 ORTHO05D006597 1.2e-50 203.4 155 66.5
TAR383G0718 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.5e-50 203.0 155 65.2
Atru.chr12.2505 Acer truncatum HOM05D005446 ORTHO05D006597 2.0e-50 202.6 155 66.5
CSS0004780 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 2.6e-50 202.2 155 67.1
Atru.chr12.2528 Acer truncatum HOM05D005446 ORTHO05D006597 4.5e-50 201.4 155 65.8
Gohir.D07G001000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 4.5e-50 201.4 155 65.2
Manes.18G108200 Manihot esculenta HOM05D005446 ORTHO05D006597 4.5e-50 201.4 155 67.7
Thecc.04G200100 Theobroma cacao HOM05D005446 ORTHO05D006597 4.5e-50 201.4 155 65.2
MBI12_g19204_MAGBIO Magnolia biondii HOM05D005446 ORTHO05D006597 9.9e-50 200.3 155 65.2
Nn1g09694 Nelumbo nucifera HOM05D005446 ORTHO05D006597 9.9e-50 200.3 155 65.8
Gohir.A07G102600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 1.7e-49 199.5 155 63.9
Eucgr.K00475 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.2e-49 199.1 155 67.7
Gorai.001G000500 Gossypium raimondii HOM05D005446 ORTHO05D006597 2.2e-49 199.1 155 64.5
vmacro06473 Vaccinium macrocarpon HOM05D005446 ORTHO05D006597 2.2e-49 199.1 155 65.2
Eucgr.K00477 Eucalyptus grandis HOM05D005446 ORTHO05D006597 2.9e-49 198.7 155 67.1
Potri.015G001200 Populus trichocarpa HOM05D005446 ORTHO05D006597 2.9e-49 198.7 155 67.7
Gorai.001G114700 Gossypium raimondii HOM05D005446 ORTHO05D006597 3.8e-49 198.4 155 63.9
Rhsim03G0218300 Rhododendron simsii HOM05D005446 ORTHO05D006597 3.8e-49 198.4 155 65.2
GSVIVG01038676001 Vitis vinifera HOM05D005446 ORTHO05D006597 4.9e-49 198.0 155 65.2
Glyma.14G188600 Glycine max HOM05D005446 ORTHO05D006597 6.4e-49 197.6 155 65.2
Sabra15G0000700 Salix brachista HOM05D005446 ORTHO05D006597 6.4e-49 197.6 155 67.7
CANSAT64G2376 Cannabis sativa HOM05D005446 ORTHO05D006597 1.4e-48 196.4 155 65.2
Lj3A584T51 Lonicera japonica HOM05D005446 ORTHO05D006597 1.4e-48 196.4 155 63.2
Eucgr.L02508 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.9e-48 196.1 155 66.5
Lj1A1031T79 Lonicera japonica HOM05D005446 ORTHO05D006597 1.9e-48 196.1 155 63.2
Oeu029325.1 Olea europaea HOM05D005446 ORTHO05D006597 1.9e-48 196.1 155 65.2
Glyma.02G221100 Glycine max HOM05D005446 ORTHO05D006597 7.1e-48 194.1 155 62.6
Peaxi162Scf00192g00016 Petunia axillaris HOM05D005446 ORTHO05D006597 7.1e-48 194.1 155 62.6
Cpa.g.sc3.182 Carica papaya HOM05D005446 ORTHO05D006597 9.3e-48 193.7 155 62.6
Gohir.D07G106600 Gossypium hirsutum HOM05D005446 ORTHO05D006597 9.3e-48 193.7 155 62.6
Ciclev10006132m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.2e-47 193.4 155 66.5
MSTRG.26955 Avicennia marina HOM05D005446 ORTHO05D006597 2.1e-47 192.6 155 63.9
Peaxi162Scf00038g02639 Petunia axillaris HOM05D005446 ORTHO05D006597 2.1e-47 192.6 155 61.9
CSS0007128 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 4.6e-47 191.4 156 62.8
CSS0045409 Camellia sinensis var. sinensis HOM05D005446 ORTHO05D006597 4.6e-47 191.4 156 62.8
PGSC0003DMG400032145 Solanum tuberosum HOM05D005446 ORTHO05D006597 7.9e-47 190.7 155 60.6
Potri.015G001000 Populus trichocarpa HOM05D005446 ORTHO05D006597 1.0e-46 190.3 155 65.2
Sopen01g002260 Solanum pennellii HOM05D005446 ORTHO05D006597 1.0e-46 190.3 155 61.3
Lalb_Chr10g0102991 Lupinus albus HOM05D005446 ORTHO05D006597 2.3e-46 189.1 155 61.9
Gohir.A03G015000 Gossypium hirsutum HOM05D005446 ORTHO05D006597 3.9e-46 188.3 155 62.6
LjContig00155g0018941 Lotus japonicus HOM05D005446 ORTHO05D006597 3.9e-46 188.3 155 62.6
EL10Ac3g05135 Beta vulgaris HOM05D005446 ORTHO05D006597 6.7e-46 187.6 155 60.6
Phvul.001G010300 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.7e-46 187.6 155 60.6
Phvul.008G188200 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 6.7e-46 187.6 155 60.6
AUR62005952 Chenopodium quinoa HOM05D005446 ORTHO05D006597 1.1e-45 186.8 155 60.6
AUR62028113 Chenopodium quinoa HOM05D005446 ORTHO05D006597 2.5e-45 185.7 155 59.4
Phvul.L008700 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 2.5e-45 185.7 155 60.0
Sed0027394 Sechium edule HOM05D005446 ORTHO05D006597 2.5e-45 185.7 155 61.3
Aqoxy5G00887 Aquilegia oxysepala HOM05D005446 ORTHO05D006597 7.4e-45 184.1 152 59.2
Migut.F00126 Erythranthe guttata HOM05D005446 ORTHO05D006597 7.4e-45 184.1 155 60.6
Phvul.003G000356 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 7.4e-45 184.1 155 60.0
CDE07G1092 Ceratophyllum demersum HOM05D005446 ORTHO05D006597 1.6e-44 183.0 155 60.0
Ca_05549_v3 Cicer arietinum L. HOM05D005446 ORTHO05D006597 3.7e-44 181.8 152 60.5
Hund09744 Selenicereus undatus HOM05D005446 ORTHO05D006597 3.7e-44 181.8 155 58.1
ECA247G1253 Erigeron canadensis HOM05D005446 ORTHO05D006597 8.1e-44 180.6 155 58.1
SGA_v2.0_scaffold44G16871 Striga asiatica HOM05D005446 ORTHO05D006597 8.1e-44 180.6 174 54.0
PSO782G3129 Papaver somniferum HOM05D005446 ORTHO05D006597 1.1e-43 180.3 155 56.8
unitig_0.g2433 Utricularia gibba HOM05D005446 ORTHO05D006597 1.1e-43 180.3 155 59.4
HanXRQChr02g0037361 Helianthus annuus HOM05D005446 ORTHO05D006597 1.4e-43 179.9 155 58.1
VMungo0647G1380 Vigna mungo HOM05D005446 ORTHO05D006597 1.8e-43 179.5 147 61.9
PSO170G1626 Papaver somniferum HOM05D005446 ORTHO05D006597 2.4e-43 179.1 155 56.1
ClCG09G010380 Citrullus lanatus HOM05D005446 ORTHO05D006597 6.9e-43 177.6 155 59.4
CsaV3_7G024240 Cucumis sativus L. HOM05D005446 ORTHO05D006597 1.2e-42 176.8 155 60.0
MELO3C023673.2 Cucumis melo HOM05D005446 ORTHO05D006597 1.5e-42 176.4 155 60.6
Medtr5g068650 Medicago truncatula HOM05D005446 ORTHO05D006597 1.5e-42 176.4 152 58.6
DCAR_008034 Daucus carota HOM05D005446 ORTHO05D006597 7.6e-42 174.1 153 56.9
HanXRQChr02g0037371 Helianthus annuus HOM05D005446 ORTHO05D006597 1.0e-41 173.7 150 57.3
CAN.G140.1 Capsicum annuum HOM05D005446 ORTHO05D006597 2.2e-41 172.6 155 56.1
Cc02_g16080 Coffea canephora HOM05D005446 ORTHO05D006597 2.2e-41 172.6 155 58.1
Solyc01g006260.4 Solanum lycopersicum HOM05D005446 ORTHO05D006597 6.5e-41 171.0 145 59.3
TAR629G0354 Trochodendron aralioides HOM05D005446 ORTHO05D006597 6.5e-41 171.0 145 60.0
Eucgr.K00052 Eucalyptus grandis HOM05D005446 ORTHO05D006597 7.1e-40 167.5 150 62.0
Lsat_1_v5_gn_1_26901 Lactuca sativa HOM05D005446 ORTHO05D006597 9.3e-40 167.2 155 55.5
HPP92_023794 Vanilla planifolia HOM05D005446 ORTHO05D006597 9.3e-40 167.2 155 55.5
Aa31LG10G6780 Aethionema arabicum HOM05D005446 ORTHO05D006597 3.5e-39 165.2 154 52.6
Nitab4.5_0005132g0070 Nicotiana tabacum HOM05D005446 ORTHO05D006597 3.5e-39 165.2 132 62.1
ATR0579G170 Amborella trichopoda HOM05D005446 ORTHO05D006597 4.6e-39 164.9 141 57.4
TPR.G5849 Trifolium pratense HOM05D005446 ORTHO05D006597 4.6e-39 164.9 152 57.2
Zm00001eb200370 Zea mays HOM05D005446 ORTHO05D006597 7.9e-39 164.1 153 54.2
Eucgr.K00059 Eucalyptus grandis HOM05D005446 ORTHO05D006597 1.3e-38 163.3 150 61.3
QL04p035447 Quercus lobata HOM05D005446 ORTHO05D006597 1.8e-38 162.9 136 62.5
Ah.13g071020 Amaranthus hybridus HOM05D005446 ORTHO05D006597 5.1e-38 161.4 214 44.9
Carub.0001s0387 Capsella rubella HOM05D005446 ORTHO05D006597 5.1e-38 161.4 156 53.8
AL1G14320 Arabidopsis lyrata HOM05D005446 ORTHO05D006597 6.7e-38 161.0 156 53.2
AT1G04635 Arabidopsis thaliana HOM05D005446 ORTHO05D006597 1.1e-37 160.2 156 53.2
DCAR_019328 Daucus carota HOM05D005446 ORTHO05D006597 1.1e-37 160.2 131 61.8
Nitab4.5_0022559g0010 Nicotiana tabacum HOM05D005446 ORTHO05D006597 1.1e-37 160.2 127 63.0
CARHR003990 Cardamine hirsuta HOM05D005446 ORTHO05D006597 2.5e-37 159.1 156 52.6
Thhalv10009004m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 4.3e-37 158.3 156 52.6
THA.LOC104820657 Tarenaya hassleriana HOM05D005446 ORTHO05D006597 1.1e-35 153.7 156 50.0
BraA10t42580Z Brassica rapa HOM05D002401 ORTHO05D007109 5.9e-34 147.9 154 50.0
Sp4g14630 Schrenkiella parvula HOM05D005446 ORTHO05D006597 5.9e-34 147.9 151 50.3
A10p03070 Brassica napus HOM05D002401 ORTHO05D007109 7.6e-34 147.5 154 49.4
BolC5t29066H Brassica oleracea HOM05D002401 ORTHO05D007109 1.0e-33 147.1 154 50.0
C05p02830 Brassica napus HOM05D002401 ORTHO05D007109 1.3e-33 146.7 154 50.0
CDE05G0789 Ceratophyllum demersum HOM05D002553 ORTHO05D002767 3.8e-33 145.2 137 55.5
Os04g0295100 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 1.9e-32 142.9 162 47.5
Sp1g03470 Schrenkiella parvula HOM05D005446 ORTHO05D006597 9.3e-32 140.6 151 48.3
Thhalv10017414m.g Eutrema salsugineum HOM05D005446 ORTHO05D006597 4.6e-31 138.3 128 52.3
Os05g0270500 Oryza sativa ssp. japonica HOM05D005446 ORTHO05D006597 4.6e-31 138.3 148 49.3
PGR142G4477 Punica granatum HOM05D005446 ORTHO05D006597 3.9e-30 135.2 153 49.0
FAN10G3034 Fragaria x ananassa HOM05D005446 ORTHO05D006597 8.7e-30 134.0 104 66.3
Psat2g060440 Pisum sativum HOM05D005446 ORTHO05D006597 1.9e-29 132.9 146 48.6
TAR362G0055 Trochodendron aralioides HOM05D005446 ORTHO05D006597 1.6e-28 129.8 114 59.6
QL09p006057 Quercus lobata HOM05D000605 ORTHO05D001937 1.2e-26 123.6 81 75.3
Sc13g0010680 Simmondsia chinensis HOM05D005446 ORTHO05D006597 4.5e-26 121.7 99 61.6
Ciclev10023849m.g Citrus clementina HOM05D005446 ORTHO05D006597 1.7e-25 119.8 103 59.2
arahy.Tifrunner.gnm1.ann1.PTVQ9K Arachis hypogaea HOM05D005446 ORTHO05D006597 1.4e-24 116.7 109 53.2
arahy.Tifrunner.gnm1.ann1.G1Q0KH Arachis hypogaea HOM05D005446 ORTHO05D006597 2.5e-24 115.9 109 53.2
QL09p006020 Quercus lobata HOM05D005446 ORTHO05D006597 2.5e-24 115.9 91 64.8
Oeu055421.1 Olea europaea HOM05D005446 ORTHO05D006597 1.8e-22 109.8 98 54.1
SEGI_01150 Sequoiadendron giganteum HOM05D005446 ORTHO05D006597 8.8e-22 107.5 144 41.0
Pp3c14_9250 Physcomitrium patens HOM05D005446 ORTHO05D006597 2.4e-19 99.4 128 46.1
TPR.G27917 Trifolium pratense HOM05D005446 ORTHO05D006597 1.2e-18 97.1 138 44.2
AagrBONN_evm.TU.Sc2ySwM_117.1519 Anthoceros agrestis HOM05D005446 ORTHO05D006597 2.0e-18 96.3 129 41.9
SHI13471 Sapria himalayana HOM05D005446 ORTHO05D006597 1.4e-16 90.1 59 69.5
Phvul.003G000382 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.9e-16 89.7 59 69.5
Phvul.L006525 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 1.9e-16 89.7 59 69.5
Phvul.L004350 Phaseolus vulgaris HOM05D005446 ORTHO05D006597 7.2e-16 87.8 68 64.7
Mapoly0096s0024 Marchantia polymorpha HOM05D005446 ORTHO05D006597 3.3e-13 79.0 130 37.7
SMO356G0648 Selaginella moellendorffii HOM05D005446 ORTHO05D006597 3.7e-12 75.5 153 31.4
MELO3C018158.2 Cucumis melo HOM05D005446 ORTHO05D006597 8.2e-12 74.3 68 57.4
Cre01.g026100 Chlamydomonas reinhardtii HOM05D005446 ORTHO05D006597 4.0e-06 55.5 131 29.8
Psat2g148960 Pisum sativum HOM05D005446 ORTHO05D006597 6.7e-06 54.7 50 56.0


User provided reference genes

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