Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 2055.0 1061 100.0
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 0.0e+00 1699.9 1116 80.9
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1655.6 1088 83.1
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1539.6 1115 75.9
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1527.3 890 90.7
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1495.7 833 93.9
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 0.0e+00 1490.7 1114 73.2
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1479.9 1121 73.1
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1477.2 1121 72.6
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1385.2 1192 66.9
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 0.0e+00 1359.0 1127 68.7
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 0.0e+00 1346.6 1134 66.2
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 0.0e+00 1318.9 1230 62.8
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 0.0e+00 1283.9 1073 65.6
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 0.0e+00 1283.5 1150 63.2
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 0.0e+00 1280.0 1195 60.7
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 0.0e+00 1278.5 769 89.2
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1274.6 1163 62.1
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 0.0e+00 1273.8 1163 62.1
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 0.0e+00 1265.4 1126 63.9
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 0.0e+00 1259.6 1204 59.9
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 0.0e+00 1254.6 1196 60.4
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 0.0e+00 1250.0 1152 62.7
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 0.0e+00 1249.6 1166 61.4
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 0.0e+00 1241.5 1161 61.5
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 0.0e+00 1228.8 1193 59.7
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 0.0e+00 1225.3 1158 60.6
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 0.0e+00 1222.2 1078 63.1
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1212.6 1158 60.4
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 0.0e+00 1204.1 1143 60.0
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 0.0e+00 1202.2 957 67.6
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 0.0e+00 1194.5 1155 59.6
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 0.0e+00 1191.0 1130 59.2
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 0.0e+00 1187.6 1136 59.3
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 0.0e+00 1186.4 1010 64.0
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 0.0e+00 1182.2 1225 56.0
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 0.0e+00 1178.7 1184 58.0
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 0.0e+00 1177.5 1021 62.4
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 0.0e+00 1176.4 1140 58.8
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 0.0e+00 1175.2 1138 59.2
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 0.0e+00 1174.1 1027 62.8
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 0.0e+00 1172.9 1154 58.1
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 0.0e+00 1163.3 1181 57.4
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 0.0e+00 1160.2 1221 56.1
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 0.0e+00 1158.3 1079 60.1
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 0.0e+00 1154.4 1134 57.1
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 0.0e+00 1154.4 1174 57.1
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 0.0e+00 1154.0 1151 58.3
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 0.0e+00 1152.1 916 66.7
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 0.0e+00 1151.7 1147 57.1
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 0.0e+00 1151.0 1153 56.7
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 0.0e+00 1147.5 1142 57.3
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 0.0e+00 1146.7 1141 57.1
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 0.0e+00 1144.8 1092 58.5
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 0.0e+00 1144.4 872 70.8
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 0.0e+00 1143.3 1147 57.8
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 0.0e+00 1135.9 1225 54.9
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 0.0e+00 1134.8 1136 56.7
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 0.0e+00 1132.1 1037 61.4
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 0.0e+00 1122.8 933 63.3
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 0.0e+00 1120.9 1208 55.4
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 0.0e+00 1120.5 919 66.6
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 0.0e+00 1118.2 1086 59.3
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 0.0e+00 1116.7 920 64.0
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 0.0e+00 1115.5 1078 59.9
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 0.0e+00 1096.6 1269 52.9
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 0.0e+00 1088.6 817 69.9
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 0.0e+00 1078.9 928 64.7
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 0.0e+00 1076.2 1226 52.8
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.5e-311 1073.2 1200 54.2
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 7.9e-309 1063.9 1156 53.1
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 1.5e-307 1059.7 979 60.8
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 2.5e-307 1058.9 922 61.6
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 3.3e-307 1058.5 920 61.6
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 1.2e-304 1050.0 1187 51.7
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 1.5e-304 1049.7 1218 53.2
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 2.6e-304 1048.9 1182 52.1
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 1.1e-302 1043.5 1016 59.0
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 1.4e-302 1043.1 857 68.4
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 1.3e-298 1030.0 915 59.8
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 1.6e-296 1023.1 932 61.4
MD07G1241600 Malus domestica HOM05D002705 ORTHO05D004955 4.1e-289 998.4 628 85.5
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 7.7e-288 994.2 1010 56.2
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 5.5e-278 961.4 808 64.0
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 2.7e-277 959.1 1031 54.0
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 4.1e-273 945.3 812 62.9
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 1.2e-256 890.6 1102 49.7
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 1.3e-242 844.0 594 73.9
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 1.7e-242 843.6 695 64.7
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 7.1e-241 838.2 693 64.4
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.7e-239 833.6 1094 45.2
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 2.6e-235 819.7 1107 46.6
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.6e-235 819.7 956 47.5
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 6.0e-232 808.5 1008 46.8
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.1e-220 771.2 867 49.0
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 4.6e-216 755.7 904 47.6
CARHR232510 Cardamine hirsuta HOM05D002705 ORTHO05D004955 1.0e-207 728.0 613 62.5
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 8.2e-205 718.4 702 59.0
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 5.3e-204 715.7 396 93.7
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 6.7e-199 698.7 1060 44.4
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 1.4e-188 664.5 693 57.0
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 2.6e-187 660.2 499 66.9
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 4.9e-157 559.7 415 70.6
Nn1g00770 Nelumbo nucifera HOM05D002705 ORTHO05D004955 1.1e-156 558.5 500 61.8
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 8.6e-130 469.2 332 75.3
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.1e-129 468.8 421 62.0
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 8.1e-128 462.6 755 39.3
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 4.4e-126 456.8 739 41.0
Manes.14G040200 Manihot esculenta HOM05D002705 ORTHO05D004955 3.9e-122 443.7 372 65.9
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.8e-119 434.9 348 66.7
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 2.4e-100 371.3 201 97.0
CBR_g55304 Chara braunii HOM05D002705 ORTHO05D004955 3.3e-89 334.3 413 44.1
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.8e-88 331.3 257 70.4
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.1e-79 300.8 233 70.4
Hma1.2p1_2119F.1_g314380 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 8.0e-67 260.0 227 58.6
MD07G1245200 Malus domestica HOM05D002705 ORTHO05D004955 1.4e-66 259.2 165 84.8
SMO118G0116 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 6.7e-66 256.9 524 35.3
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 2.7e-59 235.0 707 29.8
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 4.4e-57 227.6 227 54.2
CAN.G1559.4 Capsicum annuum HOM05D002705 ORTHO05D004955 1.3e-56 226.1 296 45.9
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 2.8e-56 224.9 165 66.7
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 2.7e-46 191.8 757 26.6
SHI35079 Sapria himalayana HOM05D002705 ORTHO05D000001 1.1e-44 186.4 188 55.9
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 4.2e-44 184.5 448 37.3
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 9.5e-44 183.3 737 26.3
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 2.8e-43 181.8 743 26.9
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 4.0e-42 177.9 851 25.1
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 6.8e-42 177.2 781 26.4
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 8.9e-42 176.8 752 25.9
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 5.9e-38 164.1 257 40.9
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 2.1e-35 155.6 140 59.3
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.0e-33 149.1 155 51.6
SEGI_07874 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.0e-33 149.1 189 47.1
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 5.8e-33 147.5 143 56.6
Ca_09786_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 3.2e-31 141.7 209 44.5
MD07G1244100 Malus domestica HOM05D002705 ORTHO05D004955 3.2e-31 141.7 73 95.9
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 5.4e-31 141.0 873 23.0
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.0e-29 135.2 758 23.0
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 1.9e-28 132.5 787 25.2
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.3e-28 131.3 133 54.9
Cpa.g.sc13.234 Carica papaya HOM05D002705 ORTHO05D004955 1.6e-27 129.4 160 48.1
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-24 118.6 294 32.0
Hund10671 Selenicereus undatus HOM05D002705 ORTHO05D004955 3.2e-23 115.2 81 66.7
VMungo0720G0654 Vigna mungo HOM05D002705 ORTHO05D004955 4.1e-23 114.8 114 59.6
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 7.8e-22 110.5 486 24.3
CDE06G1177 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 3.9e-21 108.2 130 46.2
Solyc03g093840.3 Solanum lycopersicum HOM05D002705 ORTHO05D004955 4.3e-20 104.8 162 40.7
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 9.5e-20 103.6 269 28.6
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 1.1e-18 100.1 687 25.9
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 1.5e-17 96.3 69 73.9
SEGI_05624 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 4.4e-17 94.7 151 39.7
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 8.6e-13 80.5 431 24.1
MD07G1244200 Malus domestica HOM05D002705 ORTHO05D004955 2.5e-12 79.0 90 56.7
SMO119G0278 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.3e-12 78.6 134 35.8
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 7.3e-12 77.4 281 31.3
Peaxi162Scf00073g01719 Petunia axillaris HOM05D002705 ORTHO05D004955 9.5e-12 77.0 73 57.5
Sc11g0004230 Simmondsia chinensis HOM05D002705 ORTHO05D004955 3.4e-09 68.6 100 36.0
FAN03G1556 Fragaria x ananassa HOM05D002001 ORTHO05D004100 4.4e-09 68.2 183 35.0
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 2.2e-08 65.9 147 32.0


User provided reference genes

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