Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1241700 Malus domestica HOM05D002705 ORTHO05D004955 2.3e-224 781.9 401 100.0
MD07G1243600 Malus domestica HOM05D002705 ORTHO05D004955 2.5e-207 725.3 396 94.2
MD07G1244800 Malus domestica HOM05D002705 ORTHO05D004955 1.1e-205 719.9 396 93.7
Prupe.2G270600 Prunus persica HOM05D002705 ORTHO05D004955 5.0e-179 631.3 396 81.3
MD07G1244300 Malus domestica HOM05D002705 ORTHO05D004955 4.2e-154 548.5 319 89.3
RcHm_v2.0_Chr1g0373301 Rosa chinensis HOM05D002705 ORTHO05D004955 4.1e-149 531.9 402 73.6
FvH4_7g26710 Fragaria vesca HOM05D002705 ORTHO05D004955 8.0e-145 517.7 400 71.0
FAN03G2179 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.8e-144 516.5 400 71.2
MD07G1243100 Malus domestica HOM05D002705 ORTHO05D004955 2.3e-144 516.2 273 96.0
FAN06G0843 Fragaria x ananassa HOM05D002705 ORTHO05D004955 8.8e-144 514.2 400 71.0
FAN10G0038 Fragaria x ananassa HOM05D002705 ORTHO05D004955 7.5e-143 511.1 401 71.6
FAN01G0508 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.9e-140 501.5 402 70.4
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 4.1e-133 478.8 331 76.7
QL09p027408 Quercus lobata HOM05D002705 ORTHO05D004955 1.3e-131 473.8 415 65.5
Cfa013602 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.5e-130 470.3 369 69.6
Thecc.03G145700 Theobroma cacao HOM05D002705 ORTHO05D004955 2.5e-130 469.5 433 60.5
CiPaw.07G183200 Carya illinoinensis HOM05D002705 ORTHO05D004955 5.6e-130 468.4 426 62.9
Haze_22224 Corylus avellana HOM05D002705 ORTHO05D004955 3.1e-128 462.6 421 61.0
Actinidia13623 Actinidia chinensis HOM05D002705 ORTHO05D004955 1.2e-127 460.7 425 62.4
Ciclev10033740m.g Citrus clementina HOM05D002705 ORTHO05D004955 4.4e-127 458.8 414 62.8
Cpa.g.sc13.232 Carica papaya HOM05D002705 ORTHO05D004955 1.3e-126 457.2 440 58.0
CANSAT56G1220 Cannabis sativa HOM05D002705 ORTHO05D004955 3.7e-126 455.7 434 61.1
TAR636G2282 Trochodendron aralioides HOM05D002705 ORTHO05D004955 2.7e-124 449.5 435 59.1
Potri.012G114100 Populus trichocarpa HOM05D002705 ORTHO05D004955 6.0e-124 448.4 378 65.9
Cc00_g24340 Coffea canephora HOM05D002705 ORTHO05D004955 1.7e-123 446.8 389 62.5
Atru.chr6.1980 Acer truncatum HOM05D002705 ORTHO05D004955 5.0e-123 445.3 442 58.6
Atru.chr6.2006 Acer truncatum HOM05D002705 ORTHO05D004955 5.0e-123 445.3 442 58.6
Gohir.A09G248500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 1.1e-122 444.1 431 58.9
Dinv34540 Davidia involucrata HOM05D002705 ORTHO05D004955 7.3e-122 441.4 484 54.1
Hma1.2p1_2119F.1_g314370 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 9.5e-122 441.0 382 63.4
TWI39G0103 Tripterygium wilfordii HOM05D002705 ORTHO05D004955 1.2e-121 440.7 444 57.4
Sabra12G0083000 Salix brachista HOM05D002705 ORTHO05D004955 5.2e-120 435.3 431 58.9
Lj5g0005183 Lotus japonicus HOM05D002705 ORTHO05D004955 1.5e-119 433.7 390 62.6
Gohir.D09G249500 Gossypium hirsutum HOM05D002705 ORTHO05D004955 3.4e-119 432.6 432 57.9
Gorai.006G273800 Gossypium raimondii HOM05D002705 ORTHO05D004955 3.4e-119 432.6 432 57.9
Phvul.L001885 Phaseolus vulgaris HOM05D002705 ORTHO05D004955 1.3e-118 430.6 391 62.4
MD07G1245700 Malus domestica HOM05D002705 ORTHO05D004955 2.2e-118 429.9 226 96.5
Glyma.20G198400 Glycine max HOM05D002705 ORTHO05D004955 2.9e-118 429.5 385 63.1
MELO3C005443.2 Cucumis melo HOM05D002705 ORTHO05D004955 3.7e-118 429.1 389 62.7
Oeu044165.1 Olea europaea HOM05D002705 ORTHO05D004955 3.7e-118 429.1 403 59.1
GSVIVG01013853001 Vitis vinifera HOM05D002705 ORTHO05D004955 3.7e-118 429.1 273 79.5
DCAR_014643 Daucus carota HOM05D002705 ORTHO05D004955 6.4e-118 428.3 421 58.7
Sed0003657 Sechium edule HOM05D002705 ORTHO05D004955 6.4e-118 428.3 411 60.3
CsaV3_5G005160 Cucumis sativus L. HOM05D002705 ORTHO05D004955 4.1e-117 425.6 404 60.1
SGA_v2.0_scaffold352G49687 Striga asiatica HOM05D002705 ORTHO05D004955 1.2e-116 424.1 406 58.9
ClCG01G004930 Citrullus lanatus HOM05D002705 ORTHO05D004955 2.1e-116 423.3 390 61.8
Migut.F01210 Erythranthe guttata HOM05D002705 ORTHO05D004955 1.0e-115 421.0 408 60.0
Rhsim03G0158700 Rhododendron simsii HOM05D002705 ORTHO05D004955 1.7e-115 420.2 274 77.7
AL7G28030 Arabidopsis lyrata HOM05D002705 ORTHO05D004955 5.6e-114 415.2 389 58.6
Eucgr.K00116 Eucalyptus grandis HOM05D002705 ORTHO05D004955 7.3e-114 414.8 273 75.5
AT4G25120 Arabidopsis thaliana HOM05D002705 ORTHO05D004955 3.6e-113 412.5 392 58.4
Nitab4.5_0010058g0010 Nicotiana tabacum HOM05D002705 ORTHO05D004955 6.2e-113 411.8 424 55.7
Lalb_Chr06g0169611 Lupinus albus HOM05D002705 ORTHO05D004955 8.1e-113 411.4 426 56.8
Thhalv10024258m.g Eutrema salsugineum HOM05D002705 ORTHO05D004955 1.1e-112 411.0 385 58.4
Ca_09785_v3 Cicer arietinum L. HOM05D002705 ORTHO05D004955 1.4e-112 410.6 419 57.8
Medtr1g072800 Medicago truncatula HOM05D002705 ORTHO05D004955 8.9e-112 407.9 366 62.3
Carub.0007s1591 Capsella rubella HOM05D002705 ORTHO05D004955 1.2e-111 407.5 386 58.0
THA.LOC104825051 Tarenaya hassleriana HOM05D002705 ORTHO05D004955 1.5e-111 407.1 403 55.6
SalBow2G1886 Salvia bowleyana HOM05D002705 ORTHO05D004955 5.8e-111 405.2 372 61.6
Psat6g140240 Pisum sativum HOM05D002705 ORTHO05D004955 9.9e-111 404.4 367 61.0
HanXRQChr15g0493601 Helianthus annuus HOM05D002705 ORTHO05D004955 1.7e-110 403.7 363 63.1
vmacro06848 Vaccinium macrocarpon HOM05D002705 ORTHO05D004955 1.7e-110 403.7 501 50.9
Solyc03g093850.2 Solanum lycopersicum HOM05D002705 ORTHO05D004955 2.2e-110 403.3 463 51.8
Sopen03g024730 Solanum pennellii HOM05D002705 ORTHO05D004955 3.8e-110 402.5 463 52.1
Aa31LG7G10510 Aethionema arabicum HOM05D002705 ORTHO05D004955 8.4e-110 401.4 436 54.1
PGR142G4199 Punica granatum HOM05D002705 ORTHO05D004955 1.4e-109 400.6 440 53.4
Aqoxy7G00864 Aquilegia oxysepala HOM05D002705 ORTHO05D004955 1.2e-108 397.5 388 57.7
ECA232G4016 Erigeron canadensis HOM05D002705 ORTHO05D004955 5.1e-107 392.1 404 54.7
Hma1.2p1_2119F.1_g314360 Hydrangea macrophylla HOM05D002705 ORTHO05D004955 5.1e-107 392.1 444 52.5
BraA03t14645Z Brassica rapa HOM05D002705 ORTHO05D004955 6.6e-107 391.7 439 50.6
Sp7g23120 Schrenkiella parvula HOM05D002705 ORTHO05D004955 1.1e-106 391.0 280 69.3
PSO675G1384 Papaver somniferum HOM05D002705 ORTHO05D004955 1.5e-106 390.6 268 74.3
BcaC06g32837 Brassica carinata HOM05D002705 ORTHO05D004955 2.5e-106 389.8 281 68.3
C07p54050 Brassica napus HOM05D002705 ORTHO05D004955 4.3e-106 389.0 281 68.3
BolC7t45891H Brassica oleracea HOM05D002705 ORTHO05D004955 4.3e-106 389.0 281 68.3
TPR.G18561 Trifolium pratense HOM05D002705 ORTHO05D004955 4.3e-106 389.0 381 58.0
unitig_578.g16613 Utricularia gibba HOM05D002705 ORTHO05D004955 4.3e-106 389.0 341 61.3
Nn1g00769 Nelumbo nucifera HOM05D002705 ORTHO05D004955 7.3e-106 388.3 462 51.7
Lsat_1_v5_gn_0_9880 Lactuca sativa HOM05D002705 ORTHO05D004955 1.6e-105 387.1 378 58.2
Lj8C49G2 Lonicera japonica HOM05D002705 ORTHO05D004955 1.8e-104 383.6 389 56.3
A03p55770 Brassica napus HOM05D002705 ORTHO05D004955 2.4e-104 383.3 481 47.8
CSS0042603 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D004955 3.1e-104 382.9 460 50.9
AUR62042388 Chenopodium quinoa HOM05D002705 ORTHO05D004955 9.9e-103 377.9 409 53.8
HPP92_003517 Vanilla planifolia HOM05D002705 ORTHO05D004955 1.6e-100 370.5 334 60.8
EL10As1g23078 Beta vulgaris HOM05D002705 ORTHO05D004955 3.5e-100 369.4 398 52.5
Os07g0492100 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D004955 1.6e-97 360.5 275 67.3
ATR0665G329 Amborella trichopoda HOM05D002705 ORTHO05D004955 1.4e-96 357.5 288 67.0
Manes.14G040900 Manihot esculenta HOM05D002705 ORTHO05D004955 5.4e-93 345.5 232 75.9
FAN01G1045 Fragaria x ananassa HOM05D002705 ORTHO05D004955 1.0e-91 341.3 256 72.7
Ah.02g115400 Amaranthus hybridus HOM05D002705 ORTHO05D004955 2.3e-91 340.1 391 51.4
COL.COLO4_37311 Corchorus olitorius HOM05D002705 ORTHO05D004955 4.8e-89 332.4 435 49.9
FAN17G2187 Fragaria x ananassa HOM05D002705 ORTHO05D004955 2.3e-83 313.5 232 73.3
Pp3c1_29170 Physcomitrium patens HOM05D002705 ORTHO05D004955 1.4e-80 304.3 277 55.2
Mapoly0067s0049 Marchantia polymorpha HOM05D002705 ORTHO05D004955 1.8e-80 303.9 312 51.6
AagrBONN_evm.TU.Sc2ySwM_117.709 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.2e-79 301.2 371 45.8
SMO263G0015 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.8e-78 296.2 266 56.0
SMO118G0423 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 3.9e-75 286.2 266 55.6
Nitab4.5_0000103g0340 Nicotiana tabacum HOM05D002705 ORTHO05D004955 1.0e-59 235.0 167 68.9
MSTRG.8400 Avicennia marina HOM05D002705 ORTHO05D004955 2.8e-57 226.9 166 68.7
Peaxi162Scf00073g01729 Petunia axillaris HOM05D002705 ORTHO05D004955 3.7e-57 226.5 159 71.1
CAN.G408.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.4e-56 224.6 166 65.7
CAN.G1654.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.8e-56 224.2 165 66.1
MD07G1245800 Malus domestica HOM05D002705 ORTHO05D004955 1.7e-54 217.6 131 87.8
CAN.G1406.1 Capsicum annuum HOM05D002705 ORTHO05D004955 1.4e-53 214.5 165 63.6
Peaxi162Scf00073g01730 Petunia axillaris HOM05D002705 ORTHO05D004955 5.7e-42 176.0 108 83.3
CBR_g46888 Chara braunii HOM05D002705 ORTHO05D004955 7.7e-39 165.6 140 62.9
SEGI_26843 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 1.0e-35 155.2 148 57.4
HPP92_027816 Vanilla planifolia HOM05D002705 ORTHO05D004955 5.7e-34 149.4 99 71.7
CAN.G1654.1 Capsicum annuum HOM05D002705 ORTHO05D004955 7.5e-34 149.1 98 70.4
CAN.G1406.2 Capsicum annuum HOM05D002705 ORTHO05D004955 1.8e-32 144.4 98 68.4
AagrBONN_evm.TU.Sc2ySwM_340.578 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.3e-30 138.3 114 54.4
SEGI_07071 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 2.9e-30 137.1 143 53.8
MCO05G634 Micromonas commoda HOM05D002705 ORTHO05D004955 3.0e-27 127.1 306 32.4
AagrBONN_evm.TU.Sc2ySwM_362.2714 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.4e-24 118.2 276 29.7
Pp3s32_280 Physcomitrium patens HOM05D020685 ORTHO05D022318 9.2e-24 115.5 285 30.2
Cfa026800 Carpinus fangiana HOM05D002705 ORTHO05D004955 1.0e-22 112.1 276 31.2
Mapoly0020s0153 Marchantia polymorpha HOM05D002705 ORTHO05D004955 5.6e-21 106.3 301 29.9
AagrBONN_evm.TU.Sc2ySwM_368.2221 Anthoceros agrestis HOM05D002705 ORTHO05D004955 1.6e-20 104.8 326 28.5
PRCOL_00004767 Prasinoderma coloniale HOM05D002705 ORTHO05D004955 1.0e-19 102.1 307 29.6
Lsat_1_v5_gn_5_183700 Lactuca sativa HOM05D002705 ORTHO05D021366 8.9e-19 99.0 69 75.4
Pp3s70_120 Physcomitrium patens HOM05D002705 ORTHO05D004955 8.3e-17 92.4 318 27.7
ATR0789G167 Amborella trichopoda HOM05D002705 ORTHO05D004955 4.3e-13 80.1 325 24.0
SEGI_13522 Sequoiadendron giganteum HOM05D002705 ORTHO05D004955 6.2e-12 76.3 247 25.9
arahy.Tifrunner.gnm1.ann1.WYM0Y2 Arachis hypogaea HOM05D002705 ORTHO05D004955 1.4e-11 75.1 50 70.0
arahy.Tifrunner.gnm1.ann1.ZG0SUW Arachis hypogaea HOM05D002705 ORTHO05D004955 1.4e-11 75.1 50 70.0
CBR_g22322 Chara braunii HOM05D000019 ORTHO05D000002 1.4e-11 75.1 172 32.6
Sc11g0004220 Simmondsia chinensis HOM05D002705 ORTHO05D004955 3.4e-10 70.5 45 68.9
CDE06G2589 Ceratophyllum demersum HOM05D002705 ORTHO05D004955 9.8e-10 68.9 197 34.0
SMO222G0004 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.7e-09 68.2 48 70.8
SMO119G0107 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 2.2e-09 67.8 268 26.5
Cre07.g343333 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 3.7e-09 67.0 80 36.2
Cre07.g312250 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 4.9e-09 66.6 101 41.6
Cre07.g314400 Chlamydomonas reinhardtii HOM05D002705 ORTHO05D004955 4.1e-08 63.5 385 23.9
SMO118G0216 Selaginella moellendorffii HOM05D002705 ORTHO05D004955 1.0e-06 58.9 48 50.0
Medtr0675s0010 Medicago truncatula HOM05D002705 ORTHO05D004955 1.7e-06 58.2 255 27.8


User provided reference genes

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