Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1221000 Malus domestica HOM05D005539 ORTHO05D006644 8.5e-54 213.4 106 100.0
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 5.2e-11 71.2 36 91.7
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 7.6e-10 67.4 36 86.1
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 9.9e-10 67.0 36 86.1
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.1e-08 63.5 37 70.3
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 3.2e-08 62.0 36 75.0
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 3.2e-08 62.0 36 77.8
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 3.2e-08 62.0 36 75.0
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.2e-08 62.0 36 75.0
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.2e-08 62.0 36 75.0
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.2e-08 62.0 36 72.2
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 3.2e-08 62.0 36 72.2
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 3.2e-08 62.0 36 72.2
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.1e-08 61.6 36 75.0
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.1e-08 61.6 36 75.0
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 4.1e-08 61.6 36 75.0
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 5.4e-08 61.2 36 72.2
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 7.1e-08 60.8 36 69.4
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 7.1e-08 60.8 36 69.4
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 9.2e-08 60.5 36 72.2
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 9.2e-08 60.5 47 57.4
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 1.2e-07 60.1 36 72.2
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 1.6e-07 59.7 36 69.4
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 1.6e-07 59.7 36 72.2
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 1.6e-07 59.7 36 66.7
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 2.1e-07 59.3 76 42.1
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 2.1e-07 59.3 36 72.2
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 2.1e-07 59.3 76 40.8
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 3.5e-07 58.5 98 36.7
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 3.5e-07 58.5 36 66.7
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 3.5e-07 58.5 36 66.7
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 3.5e-07 58.5 36 72.2
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 4.6e-07 58.2 36 72.2
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 4.6e-07 58.2 36 69.4
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 6.0e-07 57.8 36 63.9
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 6.0e-07 57.8 47 53.2
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 6.0e-07 57.8 98 35.7
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 6.0e-07 57.8 36 66.7
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 6.0e-07 57.8 36 69.4
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 6.0e-07 57.8 36 66.7
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 6.0e-07 57.8 36 66.7
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 7.8e-07 57.4 76 39.5
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 7.8e-07 57.4 76 39.5
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 7.8e-07 57.4 36 72.2
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 7.8e-07 57.4 36 66.7
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 1.0e-06 57.0 36 66.7
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 1.0e-06 57.0 47 53.2
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 1.0e-06 57.0 47 57.4
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 1.0e-06 57.0 36 66.7
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 1.3e-06 56.6 98 35.7
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 1.3e-06 56.6 36 72.2
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 1.3e-06 56.6 36 69.4
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.3e-06 56.6 36 72.2
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 1.3e-06 56.6 36 72.2
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 1.7e-06 56.2 36 69.4
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.7e-06 56.2 36 66.7
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 1.7e-06 56.2 36 69.4
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 1.7e-06 56.2 35 68.6
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.7e-06 56.2 36 69.4
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 1.7e-06 56.2 36 63.9
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 1.7e-06 56.2 36 69.4
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 2.3e-06 55.8 36 66.7
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 2.3e-06 55.8 36 69.4
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 3.0e-06 55.5 98 35.7
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 3.0e-06 55.5 36 63.9
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 3.0e-06 55.5 36 66.7
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 3.0e-06 55.5 36 66.7
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 3.0e-06 55.5 36 69.4
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 3.0e-06 55.5 36 66.7
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 3.0e-06 55.5 76 39.5
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 3.0e-06 55.5 36 63.9
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 3.9e-06 55.1 36 63.9
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 3.9e-06 55.1 36 63.9
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 3.9e-06 55.1 36 66.7
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 3.9e-06 55.1 36 66.7
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 5.1e-06 54.7 36 66.7
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 5.1e-06 54.7 36 66.7
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 5.1e-06 54.7 36 69.4
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 6.6e-06 54.3 36 63.9
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 8.6e-06 53.9 36 63.9
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 8.6e-06 53.9 36 63.9
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 8.6e-06 53.9 36 63.9
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 8.6e-06 53.9 36 66.7


User provided reference genes

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