Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 2594.3 1321 100.0
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 2385.5 1321 92.1
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 2306.9 1325 88.8
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 2147.5 1327 82.1
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 2125.1 1329 80.4
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2123.2 1329 80.4
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2122.8 1329 80.4
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2120.1 1329 80.1
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2110.9 1329 79.8
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1993.4 1247 79.9
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1898.2 1330 71.7
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1882.1 1325 72.2
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1880.9 1330 71.1
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1879.8 1326 72.0
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1826.6 1329 68.8
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1820.8 1329 69.1
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1816.6 1333 68.3
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1816.2 1330 70.0
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1816.2 1330 70.5
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1813.1 1332 70.3
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1811.2 1330 69.8
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1810.8 1332 70.3
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1808.9 1329 68.7
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1797.7 1331 69.1
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1783.8 1335 67.4
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1780.0 1334 67.6
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1749.9 1253 71.4
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1745.3 1331 65.7
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1735.3 1331 66.3
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1733.8 1324 66.2
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1726.1 1323 65.4
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1721.1 1324 66.5
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1716.4 1248 71.0
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1714.1 1328 65.0
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1710.3 1330 65.3
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1704.9 1329 65.9
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1700.3 1330 64.4
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1693.3 1330 65.0
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1686.4 1327 65.8
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1680.6 1275 67.7
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1679.5 1328 64.2
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1676.0 1325 63.5
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1675.2 1280 65.1
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1669.4 1329 64.4
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1667.1 1324 64.1
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1664.0 1323 63.7
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1655.6 1322 63.7
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1654.4 1340 63.0
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1653.3 1342 61.5
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1651.3 1325 63.7
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1642.5 1348 62.5
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1640.6 1332 62.1
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1640.2 1325 64.5
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1635.2 1325 62.4
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1633.6 1336 61.3
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1633.6 1324 63.4
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1631.3 1329 62.2
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1624.0 1323 62.2
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1623.2 1338 61.8
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1619.4 1333 61.7
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1612.8 1328 61.7
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1602.0 1345 60.4
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1594.3 1240 64.5
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1584.7 1275 62.7
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1580.5 1344 60.4
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1568.1 1099 72.8
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1561.2 1322 61.1
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1540.8 1327 59.5
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1540.8 1194 64.1
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1540.0 1327 59.5
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1540.0 1103 70.2
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1534.6 1330 59.0
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1533.9 1281 63.6
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1532.7 1327 59.3
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1530.8 1331 59.2
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1528.1 1330 59.1
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1528.1 1330 59.1
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1528.1 1327 59.0
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1526.1 1329 59.1
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1516.5 1325 59.3
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1497.3 1355 56.8
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1496.9 1324 59.6
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1488.8 1326 59.0
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1471.1 1323 58.1
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1468.8 1116 66.0
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1463.0 1132 64.9
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1447.2 1327 56.7
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1439.5 1094 67.2
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1411.4 1344 53.5
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1397.9 1557 50.0
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1370.1 1326 56.8
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1367.8 1346 51.9
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1355.9 1148 60.0
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1344.3 1351 54.5
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1322.4 1331 52.4
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1298.5 948 68.8
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1208.7 905 66.1
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1192.6 1328 51.1
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1130.2 864 67.4
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1099.3 1265 47.8
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 3.8e-300 1035.4 756 70.1
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 2.0e-245 853.6 1373 37.7
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 4.2e-227 792.7 857 48.1
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 1.2e-224 784.6 1157 39.5
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 1.5e-224 784.3 1300 38.2
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 3.1e-222 776.5 1189 38.9
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 5.0e-204 716.1 769 50.7
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 1.5e-155 555.1 1527 30.3
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 5.1e-140 503.4 458 60.9
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 3.4e-136 490.7 378 63.8
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 1.9e-134 485.0 358 68.7
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 2.4e-97 361.7 1497 25.7
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 2.6e-91 341.7 1538 26.9
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 1.4e-89 335.9 254 66.5
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 2.1e-80 305.4 302 54.3
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 6.0e-80 303.9 258 55.4
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 3.4e-67 261.5 1113 25.1
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.0e-63 250.0 196 66.8
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 9.0e-60 236.9 231 52.4
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 1.2e-56 226.5 225 52.9
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 1.7e-50 206.1 1364 25.6
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.2e-48 199.9 167 63.5
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 7.1e-41 174.1 130 67.7
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 7.4e-38 164.1 121 68.6
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 9.7e-30 137.1 288 36.8
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 2.1e-24 119.4 113 56.6


User provided reference genes

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