Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1133300 Malus domestica HOM05D005856 ORTHO05D007264 2.6e-53 211.8 110 100.0
Prupe.1G228400 Prunus persica HOM05D005856 ORTHO05D007264 4.9e-44 181.0 109 84.4
MD13G1117100 Malus domestica HOM05D005856 ORTHO05D007264 6.4e-44 180.6 109 85.3
RcHm_v2.0_Chr4g0430601 Rosa chinensis HOM05D005856 ORTHO05D007264 2.1e-39 165.6 121 71.9
FAN22G0691 Fragaria x ananassa HOM05D005856 ORTHO05D007264 6.2e-39 164.1 117 75.2
FAN07G1943 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.2e-38 161.0 117 74.4
FAN17G0012 Fragaria x ananassa HOM05D005856 ORTHO05D007264 5.2e-38 161.0 117 74.4
FvH4_4g23940 Fragaria vesca HOM05D005856 ORTHO05D007264 1.2e-37 159.8 117 73.5
ClCG08G010110 Citrullus lanatus HOM05D005856 ORTHO05D007264 1.3e-36 156.4 103 78.6
CsaV3_6G032280 Cucumis sativus L. HOM05D005856 ORTHO05D007264 6.4e-36 154.1 94 80.9
Ciclev10031347m.g Citrus clementina HOM05D005856 ORTHO05D007264 8.3e-36 153.7 115 70.4
QL03p053723 Quercus lobata HOM05D005856 ORTHO05D007264 1.1e-35 153.3 118 70.3
Atru.chr11.2307 Acer truncatum HOM05D005856 ORTHO05D007264 1.4e-35 152.9 109 73.4
CSS0025471 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 1.4e-35 152.9 107 72.9
Eucgr.H04651 Eucalyptus grandis HOM05D005856 ORTHO05D007264 1.4e-35 152.9 111 72.1
PSO782G2456 Papaver somniferum HOM05D005856 ORTHO05D007264 1.4e-35 152.9 114 70.2
Peaxi162Scf00128g01130 Petunia axillaris HOM05D005856 ORTHO05D007264 1.4e-35 152.9 113 73.5
TPR.G28278 Trifolium pratense HOM05D005856 ORTHO05D007264 1.4e-35 152.9 113 69.0
BcaB03g15198 Brassica carinata HOM05D005856 ORTHO05D007264 1.9e-35 152.5 116 68.1
MELO3C011452.2 Cucumis melo HOM05D005856 ORTHO05D007264 1.9e-35 152.5 94 79.8
PGSC0003DMG400015053 Solanum tuberosum HOM05D005856 ORTHO05D007264 2.4e-35 152.1 118 69.5
Manes.13G018400 Manihot esculenta HOM05D005856 ORTHO05D007264 3.2e-35 151.8 94 79.8
CSS0003803 Camellia sinensis var. sinensis HOM05D005856 ORTHO05D007264 4.1e-35 151.4 121 66.1
SGA_v2.0_scaffold135G34936 Striga asiatica HOM05D005856 ORTHO05D007264 7.0e-35 150.6 112 69.6
Aa31sc1092G20 Aethionema arabicum HOM05D005856 ORTHO05D007264 9.2e-35 150.2 118 66.9
Cpa.g.sc351.3 Carica papaya HOM05D005856 ORTHO05D007264 9.2e-35 150.2 118 66.9
Cfa009330 Carpinus fangiana HOM05D005856 ORTHO05D007264 9.2e-35 150.2 94 78.7
Solyc05g015310.3 Solanum lycopersicum HOM05D005856 ORTHO05D007264 9.2e-35 150.2 122 67.2
Sopen05g010580 Solanum pennellii HOM05D005856 ORTHO05D007264 1.2e-34 149.8 122 67.2
THA.LOC104807593 Tarenaya hassleriana HOM05D005856 ORTHO05D007264 1.2e-34 149.8 122 65.6
VMungo1383G1560 Vigna mungo HOM05D005856 ORTHO05D007264 1.2e-34 149.8 113 69.0
CANSAT01G0688 Cannabis sativa HOM05D005856 ORTHO05D007264 1.6e-34 149.4 119 68.1
Haze_12395 Corylus avellana HOM05D005856 ORTHO05D007264 1.6e-34 149.4 94 78.7
Duzib248G0543 Durio zibethinus HOM05D005856 ORTHO05D007264 1.6e-34 149.4 94 77.7
Sed0007662 Sechium edule HOM05D005856 ORTHO05D007264 1.6e-34 149.4 94 78.7
Sc04g0010050 Simmondsia chinensis HOM05D005856 ORTHO05D007264 1.6e-34 149.4 126 65.1
CiPaw.05G111700 Carya illinoinensis HOM05D005856 ORTHO05D007264 2.1e-34 149.1 121 67.8
BcaC08g46160 Brassica carinata HOM05D005856 ORTHO05D007264 2.7e-34 148.7 94 77.7
A07p34000 Brassica napus HOM05D005856 ORTHO05D007264 2.7e-34 148.7 94 77.7
BraA07t31027Z Brassica rapa HOM05D005856 ORTHO05D007264 2.7e-34 148.7 94 77.7
COL.COLO4_20381 Corchorus olitorius HOM05D005856 ORTHO05D007264 2.7e-34 148.7 122 64.8
CAN.G43.18 Capsicum annuum HOM05D005856 ORTHO05D007264 4.6e-34 147.9 122 66.4
Dinv14826 Davidia involucrata HOM05D005856 ORTHO05D007264 4.6e-34 147.9 94 77.7
ECA233G1277 Erigeron canadensis HOM05D005856 ORTHO05D007264 4.6e-34 147.9 112 66.1
Nn4g22353 Nelumbo nucifera HOM05D005856 ORTHO05D007264 4.6e-34 147.9 103 73.8
Phvul.001G260800 Phaseolus vulgaris HOM05D005856 ORTHO05D007264 4.6e-34 147.9 113 67.3
Hund06082 Selenicereus undatus HOM05D005856 ORTHO05D007264 4.6e-34 147.9 121 66.1
TAR622G1129 Trochodendron aralioides HOM05D005856 ORTHO05D007264 4.6e-34 147.9 104 73.1
TWI36G0309 Tripterygium wilfordii HOM05D005856 ORTHO05D007264 6.0e-34 147.5 94 77.7
arahy.Tifrunner.gnm1.ann1.E9QWSH Arachis hypogaea HOM05D005856 ORTHO05D007264 7.8e-34 147.1 119 66.4
arahy.Tifrunner.gnm1.ann1.ID6EX5 Arachis hypogaea HOM05D005856 ORTHO05D007264 7.8e-34 147.1 119 66.4
Ca_16469_v3 Cicer arietinum L. HOM05D005856 ORTHO05D007264 7.8e-34 147.1 113 66.4
Lalb_Chr11g0075741 Lupinus albus HOM05D005856 ORTHO05D007264 7.8e-34 147.1 100 73.0
Medtr3g085550 Medicago truncatula HOM05D005856 ORTHO05D007264 7.8e-34 147.1 115 66.1
Potri.016G023500 Populus trichocarpa HOM05D005856 ORTHO05D007264 7.8e-34 147.1 116 70.7
Thhalv10019531m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 1.0e-33 146.7 119 64.7
Potri.006G025300 Populus trichocarpa HOM05D005856 ORTHO05D007264 1.0e-33 146.7 117 69.2
PGR119G1218 Punica granatum HOM05D005856 ORTHO05D007264 1.0e-33 146.7 122 64.8
Aqoxy5G03410 Aquilegia oxysepala HOM05D005856 ORTHO05D007264 1.7e-33 146.0 109 69.7
Lj3g0022861 Lotus japonicus HOM05D005856 ORTHO05D007264 2.3e-33 145.6 94 75.5
Oeu036879.1 Olea europaea HOM05D005856 ORTHO05D007264 2.3e-33 145.6 116 68.1
Sp5g22410 Schrenkiella parvula HOM05D005856 ORTHO05D007264 2.3e-33 145.6 101 71.3
ATR0561G073 Amborella trichopoda HOM05D005856 ORTHO05D007264 3.0e-33 145.2 94 75.5
DCAR_031194 Daucus carota HOM05D005856 ORTHO05D007264 3.9e-33 144.8 110 69.1
Nitab4.5_0000379g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 3.9e-33 144.8 123 65.0
Psat5g095080 Pisum sativum HOM05D005856 ORTHO05D007264 3.9e-33 144.8 94 73.4
Migut.H00051 Erythranthe guttata HOM05D005856 ORTHO05D007264 5.0e-33 144.4 109 66.1
Glyma.18G007700 Glycine max HOM05D005856 ORTHO05D007264 5.0e-33 144.4 113 69.0
Rhsim12G0099000 Rhododendron simsii HOM05D005856 ORTHO05D007264 5.0e-33 144.4 120 64.2
Actinidia20701 Actinidia chinensis HOM05D005856 ORTHO05D007264 6.6e-33 144.1 117 67.5
CARHR059980 Cardamine hirsuta HOM05D005856 ORTHO05D007264 6.6e-33 144.1 117 65.0
Gorai.012G175300 Gossypium raimondii HOM05D005856 ORTHO05D007264 6.6e-33 144.1 110 69.1
AT1G67440 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 8.6e-33 143.7 94 75.5
Nitab4.5_0000367g0010 Nicotiana tabacum HOM05D005856 ORTHO05D007264 8.6e-33 143.7 123 64.2
Carub.0002s1377 Capsella rubella HOM05D005856 ORTHO05D007264 1.1e-32 143.3 118 65.3
Gohir.A04G139000 Gossypium hirsutum HOM05D005856 ORTHO05D007264 1.1e-32 143.3 110 69.1
Gohir.D04G181900 Gossypium hirsutum HOM05D005856 ORTHO05D007264 1.1e-32 143.3 110 69.1
Thecc.02G210800 Theobroma cacao HOM05D005856 ORTHO05D007264 1.5e-32 142.9 94 75.5
GSVIVG01010446001 Vitis vinifera HOM05D005856 ORTHO05D007264 1.5e-32 142.9 94 74.5
EL10Ac6g13483 Beta vulgaris HOM05D005856 ORTHO05D007264 2.5e-32 142.1 122 62.3
CDE05G3252 Ceratophyllum demersum HOM05D005856 ORTHO05D007264 2.5e-32 142.1 104 68.3
Glyma.11G249500 Glycine max HOM05D005856 ORTHO05D007264 2.5e-32 142.1 113 68.1
Lsat_1_v5_gn_8_149340 Lactuca sativa HOM05D005856 ORTHO05D007264 4.3e-32 141.4 114 64.9
Lj3A1066G66 Lonicera japonica HOM05D005856 ORTHO05D007264 5.6e-32 141.0 94 72.3
AL2G26010 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 7.3e-32 140.6 117 65.8
Sabra06G0018600 Salix brachista HOM05D005856 ORTHO05D007264 7.3e-32 140.6 117 65.8
SalBow1G2377 Salvia bowleyana HOM05D005856 ORTHO05D007264 9.5e-32 140.2 112 65.2
Ah.03g136240 Amaranthus hybridus HOM05D005856 ORTHO05D007264 1.6e-31 139.4 94 71.3
unitig_88.g27631 Utricularia gibba HOM05D005856 ORTHO05D007264 1.6e-31 139.4 112 65.2
Manes.12G012850 Manihot esculenta HOM05D005856 ORTHO05D007264 2.8e-31 138.7 94 74.5
AUR62005603 Chenopodium quinoa HOM05D005856 ORTHO05D007264 4.7e-31 137.9 121 59.5
HanXRQChr08g0207721 Helianthus annuus HOM05D005856 ORTHO05D007264 6.2e-31 137.5 118 61.0
SEGI_12163 Sequoiadendron giganteum HOM05D005856 ORTHO05D007264 8.1e-31 137.1 94 70.2
AUR62024126 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.1e-30 136.7 94 69.1
HPP92_013615 Vanilla planifolia HOM05D005856 ORTHO05D007264 9.9e-29 130.2 94 66.0
Pp3c14_19540 Physcomitrium patens HOM05D005856 ORTHO05D007264 3.2e-27 125.2 93 64.5
AT1G67460 Arabidopsis thaliana HOM05D005856 ORTHO05D007264 4.1e-27 124.8 114 58.8
Thhalv10019423m.g Eutrema salsugineum HOM05D005856 ORTHO05D007264 4.1e-27 124.8 89 68.5
Sp5g22430 Schrenkiella parvula HOM05D005856 ORTHO05D007264 5.4e-27 124.4 115 59.1
Zm00001eb420890 Zea mays HOM05D005856 ORTHO05D007264 5.4e-27 124.4 111 57.7
HPP92_024239 Vanilla planifolia HOM05D005856 ORTHO05D007264 9.2e-27 123.6 119 55.5
AL2G26030 Arabidopsis lyrata HOM05D005856 ORTHO05D007264 1.2e-26 123.2 114 57.0
Carub.0002s1379 Capsella rubella HOM05D005856 ORTHO05D007264 2.1e-26 122.5 94 61.7
C06p42840 Brassica napus HOM05D005856 ORTHO05D007264 2.7e-26 122.1 77 77.9
BolC6t39153H Brassica oleracea HOM05D005856 ORTHO05D007264 2.7e-26 122.1 77 77.9
AagrBONN_evm.TU.Sc2ySwM_344.2476 Anthoceros agrestis HOM05D005856 ORTHO05D007264 3.5e-26 121.7 111 58.6
CARHR068030 Cardamine hirsuta HOM05D005856 ORTHO05D007264 7.8e-26 120.6 109 57.8
SMO236G0063 Selaginella moellendorffii HOM05D005856 ORTHO05D007264 8.6e-25 117.1 117 54.7
Os04g0381600 Oryza sativa ssp. japonica HOM05D005856 ORTHO05D007264 1.2e-23 113.2 112 50.9
Mapoly0076s0016 Marchantia polymorpha HOM05D005856 ORTHO05D007264 2.1e-23 112.5 98 56.1
MCO13G068 Micromonas commoda HOM05D005856 ORTHO05D007264 6.8e-22 107.5 98 54.1
CBR_g49528 Chara braunii HOM05D005856 ORTHO05D007264 3.4e-21 105.1 93 51.6
Cre10.g436600 Chlamydomonas reinhardtii HOM05D005856 ORTHO05D007264 1.8e-14 82.8 105 39.0
PRCOL_00004669 Prasinoderma coloniale HOM05D005856 ORTHO05D007264 3.1e-14 82.0 93 41.9
AUR62005602 Chenopodium quinoa HOM05D005856 ORTHO05D007264 1.2e-13 80.1 58 60.3
PSO063G1304 Papaver somniferum HOM05D005856 ORTHO05D007264 1.9e-11 72.8 114 44.7
Actinidia26816 Actinidia chinensis HOM05D005856 ORTHO05D007264 2.1e-07 59.3 33 81.8
VMungo0464G1347 Vigna mungo HOM05D005856 ORTHO05D007264 4.8e-07 58.2 90 45.6


User provided reference genes

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