Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 1.2e-92 343.2 171 100.0
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 2.1e-57 226.1 136 87.5
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 9.5e-55 217.2 136 84.6
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.2e-52 210.3 136 81.6
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.2e-52 210.3 136 81.6
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 2.0e-52 209.5 136 80.1
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 5.8e-52 208.0 136 80.9
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 1.7e-51 206.5 136 80.1
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 2.2e-51 206.1 136 79.4
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 2.2e-51 206.1 136 80.1
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 2.2e-51 206.1 136 79.4
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 2.2e-51 206.1 136 80.1
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 2.9e-51 205.7 136 80.1
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 6.4e-51 204.5 136 79.4
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 6.4e-51 204.5 136 77.9
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 8.3e-51 204.1 136 77.9
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 2.4e-50 202.6 132 79.5
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 5.4e-50 201.4 136 78.7
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 7.1e-50 201.1 136 78.7
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 9.2e-50 200.7 136 77.9
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 9.2e-50 200.7 132 80.3
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.2e-50 200.7 132 80.3
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.2e-50 200.7 132 80.3
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.2e-50 200.7 132 80.3
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 9.2e-50 200.7 132 80.3
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 1.6e-49 199.9 136 77.2
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.1e-49 199.5 132 79.5
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 2.7e-49 199.1 136 77.2
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.7e-49 199.1 136 77.9
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.7e-49 199.1 136 77.9
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 3.5e-49 198.7 130 80.0
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 6.0e-49 198.0 136 77.2
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 7.8e-49 197.6 131 79.4
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 7.8e-49 197.6 131 79.4
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 7.8e-49 197.6 131 78.6
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 7.8e-49 197.6 135 77.0
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 1.3e-48 196.8 136 78.7
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 1.3e-48 196.8 131 77.9
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 1.7e-48 196.4 130 79.2
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.7e-48 196.4 133 78.2
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 2.3e-48 196.1 134 76.9
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 3.9e-48 195.3 136 76.5
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 3.9e-48 195.3 180 62.8
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 5.1e-48 194.9 131 77.9
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 5.1e-48 194.9 131 78.6
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.6e-48 194.5 136 75.7
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 1.1e-47 193.7 136 75.0
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 1.1e-47 193.7 136 75.7
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 1.1e-47 193.7 131 77.9
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.5e-47 193.4 131 77.1
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 2.5e-47 192.6 131 77.9
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 2.5e-47 192.6 131 77.1
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 2.5e-47 192.6 136 75.0
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 2.5e-47 192.6 136 75.7
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 3.3e-47 192.2 136 75.0
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 3.3e-47 192.2 131 77.9
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 3.3e-47 192.2 136 75.0
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 5.6e-47 191.4 136 73.5
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 5.6e-47 191.4 131 77.1
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 7.3e-47 191.0 136 74.3
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 7.3e-47 191.0 131 77.1
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 9.6e-47 190.7 136 73.5
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 9.6e-47 190.7 136 74.3
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 9.6e-47 190.7 136 74.3
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 9.6e-47 190.7 136 74.3
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 1.2e-46 190.3 137 73.0
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.6e-46 189.9 136 74.3
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 1.6e-46 189.9 136 74.3
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 2.1e-46 189.5 136 73.5
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.8e-46 189.1 131 75.6
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 2.8e-46 189.1 138 73.2
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 3.6e-46 188.7 131 76.3
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 3.6e-46 188.7 138 73.2
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 3.6e-46 188.7 131 76.3
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 4.7e-46 188.3 131 74.8
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 4.7e-46 188.3 131 75.6
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 4.7e-46 188.3 136 74.3
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 6.2e-46 188.0 129 76.0
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 6.2e-46 188.0 131 74.8
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 8.1e-46 187.6 136 73.5
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 8.1e-46 187.6 131 74.0
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 1.1e-45 187.2 134 72.4
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 1.4e-45 186.8 136 73.5
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.4e-45 186.8 127 78.0
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 4.0e-45 185.3 136 72.1
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 4.0e-45 185.3 136 72.1
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 4.0e-45 185.3 136 72.1
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 4.0e-45 185.3 132 72.7
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 4.0e-45 185.3 136 73.5
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 5.2e-45 184.9 136 72.1
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.2e-45 184.9 155 67.1
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 6.8e-45 184.5 152 65.1
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 8.9e-45 184.1 136 71.3
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 2.6e-44 182.6 136 71.3
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 1.7e-43 179.9 136 69.9
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 2.2e-43 179.5 168 60.7
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 6.4e-43 177.9 168 60.1
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 8.4e-43 177.6 136 69.9
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 7.1e-42 174.5 125 72.8
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 1.6e-41 173.3 136 68.4
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 3.5e-41 172.2 137 70.1
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 1.0e-40 170.6 184 54.9
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 2.5e-39 166.0 131 67.9
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.3e-39 165.2 136 65.4
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 3.6e-38 162.2 200 49.0
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.8e-37 159.8 136 62.5
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.2e-36 157.1 136 61.8
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.8e-36 154.8 132 68.2
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 9.3e-34 147.5 123 60.2
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.2e-33 147.1 132 53.0
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 1.2e-33 147.1 131 54.2
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 2.7e-33 146.0 131 57.3
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 3.5e-33 145.6 102 74.5
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 6.0e-33 144.8 98 80.6
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 9.6e-31 137.5 127 63.0
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.6e-30 135.6 84 79.8
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 1.4e-29 133.7 132 50.8
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 3.1e-29 132.5 125 62.4
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 4.0e-29 132.1 130 56.2
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 9.0e-29 131.0 84 81.0
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.2e-28 130.6 84 77.4
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.2e-28 130.6 79 84.8
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.5e-28 130.2 142 57.7
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 4.5e-28 128.6 79 83.5
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-27 127.1 84 75.0
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 2.2e-27 126.3 131 57.3
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 3.8e-27 125.6 79 82.3
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.4e-26 123.6 84 78.6
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 5.4e-26 121.7 79 77.2
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.6e-25 120.2 85 74.1
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.6e-25 120.2 85 70.6
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 2.7e-25 119.4 82 75.6
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 6.0e-25 118.2 82 74.4
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 6.0e-25 118.2 82 74.4
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-24 117.1 85 69.4
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 6.9e-21 104.8 75 72.0
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 2.0e-20 103.2 71 71.8
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.2e-19 99.8 68 73.5
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 1.6e-17 93.6 89 61.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 2.3e-16 89.7 50 84.0
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.3e-14 84.0 81 55.6
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.3e-14 84.0 84 56.0
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.6e-14 83.6 84 56.0
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 1.4e-13 80.5 41 85.4
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 5.3e-13 78.6 40 85.0
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 1.3e-08 63.9 53 64.2
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.8e-06 56.2 57 57.9


User provided reference genes

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