Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD07G1042200 Malus domestica HOM05D006010 ORTHO05D007381 2.7e-147 525.4 278 100.0
MD02G1273300 Malus domestica HOM05D006010 ORTHO05D007381 2.5e-113 412.5 296 78.7
Prupe.2G048000 Prunus persica HOM05D006010 ORTHO05D007381 3.9e-106 388.7 307 72.0
RcHm_v2.0_Chr3g0492111 Rosa chinensis HOM05D006010 ORTHO05D007381 5.5e-84 315.1 307 61.2
FvH4_1g30030 Fragaria vesca HOM05D006010 ORTHO05D007381 4.5e-78 295.4 308 60.7
FAN19G0427 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.0e-77 294.3 308 60.7
FAN28G0351 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.6e-75 287.0 342 54.1
TWI53G0527 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 6.0e-75 285.0 317 55.8
CiPaw.03G074500 Carya illinoinensis HOM05D006010 ORTHO05D007381 3.3e-73 279.3 330 53.0
Lj4g0009716 Lotus japonicus HOM05D006010 ORTHO05D007381 4.3e-73 278.9 309 55.7
FAN28G1345 Fragaria x ananassa HOM05D006010 ORTHO05D007381 4.8e-72 275.4 308 56.8
Ca_05962_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 6.9e-71 271.6 325 53.2
Actinidia35721 Actinidia chinensis HOM05D006010 ORTHO05D007381 2.2e-69 266.5 336 51.8
Phvul.004G098200 Phaseolus vulgaris HOM05D006010 ORTHO05D007381 3.8e-69 265.8 326 52.8
Potri.017G135500 Populus trichocarpa HOM05D006010 ORTHO05D007381 9.4e-68 261.2 332 50.6
Rhsim10G0180400 Rhododendron simsii HOM05D006010 ORTHO05D007381 9.4e-68 261.2 330 50.3
QL12p000853 Quercus lobata HOM05D006010 ORTHO05D007381 7.9e-67 258.1 382 46.6
CsaV3_2G017210 Cucumis sativus L. HOM05D006010 ORTHO05D007381 2.3e-66 256.5 307 53.4
Lalb_Chr10g0104261 Lupinus albus HOM05D006010 ORTHO05D007381 2.3e-66 256.5 330 51.2
VMungo0464G0699 Vigna mungo HOM05D006010 ORTHO05D007381 2.3e-66 256.5 291 53.3
PGR004G1862 Punica granatum HOM05D006010 ORTHO05D007381 1.5e-65 253.8 320 51.9
Sabra17G0114300 Salix brachista HOM05D006010 ORTHO05D007381 1.5e-65 253.8 341 47.8
FAN26G2228 Fragaria x ananassa HOM05D006010 ORTHO05D007381 2.5e-65 253.1 263 60.5
Cfa007784 Carpinus fangiana HOM05D006010 ORTHO05D007381 7.4e-65 251.5 325 48.9
Haze_14288 Corylus avellana HOM05D006010 ORTHO05D007381 7.4e-65 251.5 325 49.5
arahy.Tifrunner.gnm1.ann1.RW4QB8 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.7e-64 250.4 326 50.6
FAN23G2851 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.7e-64 250.4 338 50.3
Sabra17G0111300 Salix brachista HOM05D006010 ORTHO05D007381 2.8e-64 249.6 341 47.2
Hma1.2p1_0249F.1_g102390 Hydrangea macrophylla HOM05D006010 ORTHO05D007381 3.7e-64 249.2 307 52.1
Cc02_g11480 Coffea canephora HOM05D006010 ORTHO05D007381 4.8e-64 248.8 315 48.3
Sed0022983 Sechium edule HOM05D006010 ORTHO05D007381 4.8e-64 248.8 308 52.9
arahy.Tifrunner.gnm1.ann1.14A9Q3 Arachis hypogaea HOM05D006010 ORTHO05D007381 1.1e-63 247.7 323 50.5
arahy.Tifrunner.gnm1.ann1.ZG5C6W Arachis hypogaea HOM05D006010 ORTHO05D007381 1.1e-63 247.7 317 50.8
Cpa.g.sc116.81 Carica papaya HOM05D006010 ORTHO05D007381 1.1e-63 247.7 371 45.3
TPR.G23647 Trifolium pratense HOM05D006010 ORTHO05D007381 1.1e-63 247.7 290 52.1
MELO3C020924.2 Cucumis melo HOM05D006010 ORTHO05D007381 2.4e-63 246.5 307 52.1
Medtr5g077800 Medicago truncatula HOM05D006010 ORTHO05D007381 4.1e-63 245.7 331 48.6
Actinidia28796 Actinidia chinensis HOM05D006010 ORTHO05D007381 6.9e-63 245.0 265 54.3
Sed0003139 Sechium edule HOM05D006010 ORTHO05D007381 6.9e-63 245.0 312 52.9
CANSAT01G2297 Cannabis sativa HOM05D006010 ORTHO05D007381 1.5e-62 243.8 358 47.5
Psat2g045640 Pisum sativum HOM05D006010 ORTHO05D007381 5.9e-62 241.9 332 49.1
ClCG05G010670 Citrullus lanatus HOM05D006010 ORTHO05D007381 2.7e-59 233.0 297 51.2
GSVIVG01015997001 Vitis vinifera HOM05D006010 ORTHO05D007381 3.6e-59 232.6 405 43.5
SalBow1G7757 Salvia bowleyana HOM05D006010 ORTHO05D007381 4.7e-59 232.3 336 45.5
EL10Ac3g05516 Beta vulgaris HOM05D006010 ORTHO05D007381 1.0e-58 231.1 310 47.4
MSTRG.15654 Avicennia marina HOM05D006010 ORTHO05D007381 4.4e-57 225.7 337 46.3
Ciclev10026000m.g Citrus clementina HOM05D006010 ORTHO05D007381 7.4e-57 224.9 341 46.3
Peaxi162Scf00464g00430 Petunia axillaris HOM05D006010 ORTHO05D007381 9.7e-57 224.6 329 46.2
Migut.K00936 Erythranthe guttata HOM05D006010 ORTHO05D007381 1.3e-56 224.2 307 50.5
PGSC0003DMG400013242 Solanum tuberosum HOM05D006010 ORTHO05D007381 2.8e-56 223.0 329 45.6
Eucgr.F02881 Eucalyptus grandis HOM05D006010 ORTHO05D007381 3.7e-56 222.6 319 48.3
Sopen11g006280 Solanum pennellii HOM05D006010 ORTHO05D007381 8.2e-56 221.5 329 45.9
CAN.G222.64 Capsicum annuum HOM05D006010 ORTHO05D007381 1.5e-54 217.2 329 45.0
Lsat_1_v5_gn_3_65880 Lactuca sativa HOM05D006010 ORTHO05D007381 4.5e-54 215.7 315 47.3
Glyma.16G168300 Glycine max HOM05D006010 ORTHO05D007381 5.9e-54 215.3 327 45.6
Atru.chr11.39 Acer truncatum HOM05D006010 ORTHO05D007381 1.7e-53 213.8 321 47.7
Glyma.02G082600 Glycine max HOM05D006010 ORTHO05D007381 1.7e-53 213.8 327 45.9
Oeu048940.2 Olea europaea HOM05D006010 ORTHO05D007381 2.2e-53 213.4 350 42.9
Duzib235G0102 Durio zibethinus HOM05D006010 ORTHO05D007381 5.0e-53 212.2 312 47.4
Nn3g17023 Nelumbo nucifera HOM05D006010 ORTHO05D007381 5.0e-53 212.2 346 43.9
GSVIVG01015998001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.2e-51 207.6 289 50.2
vmacro20589 Vaccinium macrocarpon HOM05D006010 ORTHO05D007381 1.1e-49 201.1 353 41.4
Hund11982 Selenicereus undatus HOM05D006010 ORTHO05D007381 7.4e-49 198.4 304 43.8
THA.LOC104827184 Tarenaya hassleriana HOM05D006010 ORTHO05D007381 7.4e-49 198.4 339 42.2
ECA236G4224 Erigeron canadensis HOM05D006010 ORTHO05D007381 6.3e-48 195.3 310 44.2
TWI74G0222 Tripterygium wilfordii HOM05D006010 ORTHO05D007381 1.4e-47 194.1 255 51.0
AUR62016215 Chenopodium quinoa HOM05D006010 ORTHO05D007381 2.0e-46 190.3 315 43.8
unitig_0.g1692 Utricularia gibba HOM05D006010 ORTHO05D007381 2.6e-46 189.9 336 41.4
DCAR_014157 Daucus carota HOM05D006010 ORTHO05D007381 3.5e-46 189.5 313 42.8
HanXRQChr15g0482991 Helianthus annuus HOM05D006010 ORTHO05D007381 4.5e-46 189.1 320 42.5
GSVIVG01016007001 Vitis vinifera HOM05D006010 ORTHO05D007381 2.2e-45 186.8 281 48.0
Thecc.06G019600 Theobroma cacao HOM05D006010 ORTHO05D007381 1.0e-42 177.9 347 38.0
Solyc11g011490.2 Solanum lycopersicum HOM05D006010 ORTHO05D007381 3.0e-42 176.4 277 45.1
AUR62039273 Chenopodium quinoa HOM05D006010 ORTHO05D007381 1.3e-40 171.0 273 44.3
COL.COLO4_31121 Corchorus olitorius HOM05D006010 ORTHO05D007381 1.4e-39 167.5 383 34.7
TAR623G0083 Trochodendron aralioides HOM05D006010 ORTHO05D007381 4.1e-39 166.0 364 38.2
Sed0026765 Sechium edule HOM05D006010 ORTHO05D007381 7.0e-39 165.2 294 42.9
FAN25G0538 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.6e-38 164.1 150 66.0
Ah.05g176710 Amaranthus hybridus HOM05D006010 ORTHO05D007381 2.0e-38 163.7 273 43.2
Lj2A517G41 Lonicera japonica HOM05D006010 ORTHO05D007381 1.0e-37 161.4 227 46.7
GSVIVG01016005001 Vitis vinifera HOM05D006010 ORTHO05D007381 1.7e-37 160.6 183 57.4
Manes.07G077600 Manihot esculenta HOM05D006010 ORTHO05D007381 2.9e-37 159.8 284 43.3
CDE09G0547 Ceratophyllum demersum HOM05D006010 ORTHO05D007381 5.0e-37 159.1 374 35.0
Sc22g0001300 Simmondsia chinensis HOM05D006010 ORTHO05D007381 1.5e-36 157.5 273 43.2
SGA_v2.0_scaffold115G32097 Striga asiatica HOM05D006010 ORTHO05D007381 5.5e-36 155.6 321 39.6
Sp3g01890 Schrenkiella parvula HOM05D006010 ORTHO05D007381 4.7e-35 152.5 340 37.1
BcaC05g30500 Brassica carinata HOM05D000919 ORTHO05D004442 1.8e-34 150.6 302 39.1
TPR.G23699 Trifolium pratense HOM05D005584 ORTHO05D006809 4.0e-34 149.4 191 46.1
Ca_05837_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 1.2e-33 147.9 193 52.3
Gohir.A10G157800 Gossypium hirsutum HOM05D006010 ORTHO05D007381 4.1e-31 139.4 415 30.8
CSS0039891 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 4.5e-30 136.0 138 57.2
Zm00001eb291600 Zea mays HOM05D006010 ORTHO05D007381 7.7e-30 135.2 348 35.6
Os05g0495100 Oryza sativa ssp. japonica HOM05D006010 ORTHO05D007381 1.7e-29 134.0 365 33.2
Ca_05839_v3 Cicer arietinum L. HOM05D006010 ORTHO05D007381 5.0e-29 132.5 132 56.1
Gorai.011G090700 Gossypium raimondii HOM05D006010 ORTHO05D007381 1.1e-28 131.3 391 31.2
Carub.0003s0196 Capsella rubella HOM05D006010 ORTHO05D007381 3.3e-28 129.8 270 37.0
AL3G12280 Arabidopsis lyrata HOM05D006010 ORTHO05D007381 5.5e-28 129.0 268 36.2
Gohir.D10G083400 Gossypium hirsutum HOM05D006010 ORTHO05D007381 1.2e-27 127.9 393 31.0
Aa31LG5G13330 Aethionema arabicum HOM05D006010 ORTHO05D007381 2.8e-27 126.7 354 33.6
C09p75990 Brassica napus HOM05D006010 ORTHO05D007381 1.8e-26 124.0 265 37.7
BolC5t35058H Brassica oleracea HOM05D006010 ORTHO05D007381 1.8e-26 124.0 265 37.7
ATR0320G006 Amborella trichopoda HOM05D006010 ORTHO05D007381 6.8e-26 122.1 189 43.4
Thhalv10021193m.g Eutrema salsugineum HOM05D006010 ORTHO05D007381 8.9e-26 121.7 260 37.3
A05p44250 Brassica napus HOM05D006010 ORTHO05D007381 1.2e-25 121.3 264 37.5
BraA06t23281Z Brassica rapa HOM05D000919 ORTHO05D004442 1.2e-25 121.3 264 37.5
FAN21G0982 Fragaria x ananassa HOM05D006010 ORTHO05D007381 1.2e-25 121.3 148 53.4
AT3G02860 Arabidopsis thaliana HOM05D006010 ORTHO05D007381 1.5e-25 120.9 270 35.9
CARHR076870 Cardamine hirsuta HOM05D006010 ORTHO05D007381 3.4e-25 119.8 269 36.4
AagrBONN_evm.TU.Sc2ySwM_369.381 Anthoceros agrestis HOM05D006010 ORTHO05D007381 3.2e-23 113.2 251 38.2
SHI30126 Sapria himalayana HOM05D006010 ORTHO05D007381 1.2e-22 111.3 159 47.2
CSS0001849 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.0e-22 110.5 95 67.4
CSS0044569 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.0e-22 110.5 95 67.4
Lj2A517G40 Lonicera japonica HOM05D006010 ORTHO05D007381 2.7e-22 110.2 95 67.4
Nitab4.5_0011135g0050 Nicotiana tabacum HOM05D006010 ORTHO05D007381 2.8e-19 100.1 133 52.6
SEGI_17538 Sequoiadendron giganteum HOM05D006010 ORTHO05D007381 2.8e-19 100.1 237 35.4
PSO478G0898 Papaver somniferum HOM05D006010 ORTHO05D007381 1.2e-17 94.7 256 35.2
Aqoxy3G00232 Aquilegia oxysepala HOM05D006010 ORTHO05D007381 3.7e-16 89.7 132 47.7
PSO017G1892 Papaver somniferum HOM05D006010 ORTHO05D007381 1.1e-15 88.2 284 30.3
Mapoly0044s0136 Marchantia polymorpha HOM05D006010 ORTHO05D007381 4.3e-12 76.3 312 27.9
Sed0018686 Sechium edule HOM05D006010 ORTHO05D007381 7.3e-12 75.5 65 61.5
Sed0023512 Sechium edule HOM05D006010 ORTHO05D007381 1.6e-11 74.3 63 63.5
ATR0320G008 Amborella trichopoda HOM05D006010 ORTHO05D007381 2.3e-10 70.5 138 34.1
Pp3c12_7630 Physcomitrium patens HOM05D006010 ORTHO05D007381 4.0e-10 69.7 159 32.7
CSS0015748 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.2e-08 63.9 50 64.0
CSS0044039 Camellia sinensis var. sinensis HOM05D006010 ORTHO05D007381 2.2e-08 63.9 50 64.0
SHI30124 Sapria himalayana HOM05D006010 ORTHO05D007381 2.9e-08 63.5 113 38.1
QL06p002867 Quercus lobata HOM05D006010 ORTHO05D007381 1.1e-07 61.6 62 54.8
GSVIVG01016036001 Vitis vinifera HOM05D006010 ORTHO05D007381 9.2e-07 58.5 67 52.2
TPR.G36575 Trifolium pratense HOM05D006010 ORTHO05D007381 1.6e-06 57.8 68 48.5
Glyma.14G212900 Glycine max HOM05D026408 ORTHO05D029776 7.8e-06 55.5 253 26.5


User provided reference genes

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