Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 6.0e-83 310.8 161 100.0
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 9.3e-60 233.8 134 94.0
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 4.6e-59 231.5 134 92.5
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 4.2e-52 208.4 134 83.6
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 1.5e-49 199.9 134 80.6
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 4.3e-49 198.4 134 79.1
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 4.3e-49 198.4 134 80.6
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 2.8e-48 195.7 134 81.3
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 4.8e-48 194.9 134 78.4
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 4.8e-48 194.9 134 77.6
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 8.1e-48 194.1 134 78.4
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 8.1e-48 194.1 134 78.4
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 1.1e-47 193.7 134 78.4
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 1.1e-47 193.7 134 78.4
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 1.4e-47 193.4 136 79.4
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 3.1e-47 192.2 134 79.9
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 3.1e-47 192.2 134 79.9
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 3.1e-47 192.2 134 79.9
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 3.1e-47 192.2 134 78.4
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 4.0e-47 191.8 134 78.4
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 5.3e-47 191.4 134 76.1
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 6.9e-47 191.0 134 78.4
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 9.0e-47 190.7 134 76.9
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.2e-46 190.3 136 77.9
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 1.2e-46 190.3 134 75.4
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 1.2e-46 190.3 134 75.4
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.2e-46 190.3 141 74.5
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 1.2e-46 190.3 134 77.6
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 2.0e-46 189.5 136 78.7
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.0e-46 189.5 134 76.1
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 2.6e-46 189.1 136 77.9
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 2.6e-46 189.1 136 77.9
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 3.4e-46 188.7 134 76.9
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 4.5e-46 188.3 134 75.4
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 4.5e-46 188.3 134 78.4
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 5.8e-46 188.0 134 74.6
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 7.6e-46 187.6 134 74.6
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 9.9e-46 187.2 134 75.4
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 9.9e-46 187.2 134 73.9
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 9.9e-46 187.2 134 75.4
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 1.3e-45 186.8 136 77.2
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.7e-45 186.4 139 74.8
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.9e-45 185.7 134 74.6
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 2.9e-45 185.7 134 73.9
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 3.8e-45 185.3 135 76.3
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.9e-45 184.9 134 73.9
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 4.9e-45 184.9 134 73.9
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.1e-44 183.7 134 73.9
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 1.1e-44 183.7 134 73.9
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 1.9e-44 183.0 135 74.8
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.4e-44 182.6 136 73.5
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.4e-44 182.6 136 73.5
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 3.2e-44 182.2 134 74.6
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 4.2e-44 181.8 136 75.0
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 4.2e-44 181.8 136 75.0
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 5.5e-44 181.4 134 73.9
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 7.1e-44 181.0 136 73.5
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 7.1e-44 181.0 136 72.8
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 9.3e-44 180.6 136 72.8
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.2e-43 180.3 134 70.9
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 1.6e-43 179.9 134 70.1
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 2.7e-43 179.1 134 73.1
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 4.6e-43 178.3 136 72.8
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 4.6e-43 178.3 136 71.3
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 1.0e-42 177.2 135 74.1
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 1.3e-42 176.8 134 71.6
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 1.8e-42 176.4 136 70.6
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 1.8e-42 176.4 136 73.5
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 1.8e-42 176.4 136 73.5
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 3.0e-42 175.6 134 70.9
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 5.1e-42 174.9 136 72.1
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 6.7e-42 174.5 136 72.1
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.5e-41 173.3 143 68.5
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 1.9e-41 172.9 134 73.9
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 3.3e-41 172.2 136 74.3
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 3.3e-41 172.2 135 72.6
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 4.3e-41 171.8 136 69.9
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 5.6e-41 171.4 136 71.3
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 9.6e-41 170.6 136 69.9
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 9.6e-41 170.6 136 69.9
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 1.3e-40 170.2 136 71.3
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 6.2e-40 167.9 136 71.3
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 1.1e-39 167.2 136 68.4
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 1.2e-38 163.7 134 71.6
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 2.6e-38 162.5 134 67.2
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 4.5e-38 161.8 136 66.2
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 1.0e-37 160.6 134 65.7
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 1.7e-37 159.8 134 67.9
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 2.2e-37 159.5 134 68.7
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 1.4e-36 156.8 138 64.5
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 2.5e-36 156.0 92 89.1
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 6.0e-35 151.4 134 62.7
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 6.0e-35 151.4 134 64.2
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 1.8e-34 149.8 134 64.2
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.8e-34 149.8 134 64.2
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 1.8e-34 149.8 134 64.2
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 3.0e-34 149.1 134 64.2
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 6.7e-34 147.9 134 63.4
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 8.7e-34 147.5 134 61.2
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.1e-33 147.1 134 62.7
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 1.5e-33 146.7 134 62.7
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 1.5e-33 146.7 134 63.4
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 2.5e-33 146.0 134 61.2
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 1.6e-32 143.3 133 61.7
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 2.2e-32 142.9 134 62.7
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.8e-31 139.8 92 78.3
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 5.3e-31 138.3 135 59.3
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 3.4e-30 135.6 136 61.0
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 7.6e-30 134.4 134 61.2
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 5.0e-29 131.7 137 59.1
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 6.5e-29 131.3 135 58.5
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 2.7e-27 125.9 135 57.0
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.7e-24 116.7 137 50.4
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 1.7e-24 116.7 138 52.9
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 1.8e-23 113.2 139 51.8
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 6.9e-23 111.3 137 51.8
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.7e-21 106.7 135 49.6
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.5e-20 102.8 126 52.4
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 2.1e-19 99.8 134 45.5
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 3.6e-19 99.0 134 47.8
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 6.1e-19 98.2 135 47.4
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 1.7e-13 80.1 99 48.5
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 5.5e-12 75.1 95 52.6
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.2e-11 73.9 108 44.4
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.6e-11 73.6 62 62.9


User provided reference genes

Program Settings