Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 3.5e-42 174.5 85 100.0
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 6.4e-36 153.7 83 88.0
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 3.1e-30 134.8 75 89.3
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 3.1e-30 134.8 75 89.3
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 3.1e-30 134.8 75 89.3
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 3.1e-30 134.8 75 89.3
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 3.1e-30 134.8 75 89.3
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 6.9e-30 133.7 75 88.0
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 9.0e-30 133.3 75 88.0
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 9.0e-30 133.3 75 88.0
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 9.0e-30 133.3 75 88.0
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 1.2e-29 132.9 75 88.0
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 1.2e-29 132.9 75 88.0
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 1.2e-29 132.9 75 88.0
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 1.2e-29 132.9 75 88.0
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 1.2e-29 132.9 75 86.7
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 1.5e-29 132.5 75 86.7
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 1.5e-29 132.5 75 86.7
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 1.5e-29 132.5 75 86.7
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 1.5e-29 132.5 75 86.7
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 2.0e-29 132.1 75 86.7
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 2.0e-29 132.1 75 86.7
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 2.0e-29 132.1 75 86.7
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 2.0e-29 132.1 75 86.7
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 2.0e-29 132.1 75 86.7
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 2.0e-29 132.1 75 86.7
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 2.0e-29 132.1 75 86.7
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 2.0e-29 132.1 75 86.7
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.0e-29 132.1 75 86.7
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 2.0e-29 132.1 75 86.7
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 2.0e-29 132.1 75 86.7
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 2.6e-29 131.7 75 86.7
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 2.6e-29 131.7 75 86.7
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 3.4e-29 131.3 75 86.7
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 3.4e-29 131.3 75 86.7
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 3.4e-29 131.3 75 86.7
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 3.4e-29 131.3 75 86.7
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 85.3
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 85.3
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 85.3
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 86.7
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 86.7
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 86.7
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 85.3
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 85.3
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 85.3
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 85.3
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 85.3
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 85.3
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 4.5e-29 131.0 75 85.3
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 5.8e-29 130.6 75 85.3
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 7.6e-29 130.2 75 85.3
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 7.6e-29 130.2 75 84.0
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 7.6e-29 130.2 75 84.0
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 9.9e-29 129.8 75 84.0
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 9.9e-29 129.8 75 84.0
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 9.9e-29 129.8 75 84.0
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 9.9e-29 129.8 75 85.3
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 1.3e-28 129.4 75 84.0
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 1.3e-28 129.4 75 84.0
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 1.3e-28 129.4 75 84.0
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 1.3e-28 129.4 75 84.0
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 1.3e-28 129.4 75 84.0
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 1.7e-28 129.0 75 85.3
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.7e-28 129.0 75 84.0
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 1.7e-28 129.0 75 84.0
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 1.7e-28 129.0 75 84.0
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 1.7e-28 129.0 75 84.0
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 3.8e-28 127.9 75 82.7
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 6.4e-28 127.1 75 82.7
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 6.4e-28 127.1 75 82.7
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-27 125.9 75 81.3
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-27 125.9 75 81.3
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.4e-27 125.9 75 81.3
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 4.2e-27 124.4 71 85.9
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 5.5e-27 124.0 75 81.3
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 1.2e-26 122.9 75 78.7
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 2.7e-26 121.7 75 78.7
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 2.7e-26 121.7 75 81.3
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 7.9e-26 120.2 71 84.5
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 1.3e-25 119.4 69 85.5
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 3.0e-25 118.2 71 81.7
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 3.3e-24 114.8 75 74.7
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 5.6e-24 114.0 65 86.2
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 4.2e-19 97.8 75 70.7
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 3.3e-16 88.2 42 92.9
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 3.3e-16 88.2 42 92.9
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 2.8e-15 85.1 42 90.5
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 1.8e-14 82.4 45 86.7
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 2.9e-12 75.1 55 74.5
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 1.2e-10 69.7 63 65.1
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 4.1e-06 54.7 39 74.4


User provided reference genes

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