Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 0.0e+00 1162.9 593 100.0
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 0.0e+00 1124.0 593 95.6
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 0.0e+00 1078.9 594 92.9
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 4.5e-293 1010.7 591 86.3
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.4e-291 1005.7 591 86.0
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 9.3e-291 1003.0 591 85.8
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 6.0e-290 1000.3 592 85.0
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.3e-288 994.6 604 84.3
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 4.3e-288 994.2 593 84.8
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 3.4e-285 984.6 592 83.6
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 1.1e-283 979.5 592 83.8
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 4.2e-283 977.6 592 84.3
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 4.2e-283 977.6 592 83.6
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 5.5e-283 977.2 592 84.1
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 3.0e-281 971.5 592 82.4
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 5.1e-281 970.7 616 81.0
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 1.5e-280 969.1 592 82.1
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 1.6e-279 965.7 594 82.0
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 8.1e-279 963.4 592 81.9
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.1e-278 961.4 589 84.0
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 4.0e-278 961.1 600 81.3
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 6.9e-278 960.3 608 80.3
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 1.7e-276 955.7 592 82.1
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.0e-273 946.4 592 80.7
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 5.1e-273 944.1 594 79.6
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 8.7e-273 943.3 560 85.9
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 1.5e-272 942.6 610 78.9
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 2.5e-272 941.8 594 79.8
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 3.3e-272 941.4 594 79.6
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 2.1e-271 938.7 640 75.6
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 2.8e-271 938.3 593 79.3
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 1.1e-270 936.4 594 79.1
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 1.4e-270 936.0 568 82.7
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 1.4e-270 936.0 595 79.7
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 1.5e-269 932.6 595 78.0
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.4e-269 931.4 593 80.1
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 3.4e-269 931.4 595 79.3
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 5.9e-269 930.6 593 78.6
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 7.6e-269 930.2 595 78.2
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 7.6e-269 930.2 593 80.1
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 7.6e-269 930.2 591 78.2
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 1.7e-268 929.1 595 77.8
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.7e-268 929.1 591 79.5
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 2.9e-268 928.3 595 77.8
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 5.0e-268 927.5 595 77.5
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 1.1e-267 926.4 595 77.6
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 1.1e-267 926.4 592 79.1
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 1.1e-267 926.4 592 80.2
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.9e-267 925.6 593 79.3
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 3.2e-267 924.9 595 77.6
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 3.2e-267 924.9 595 77.5
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 4.2e-267 924.5 595 77.6
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.2e-266 922.9 595 77.6
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 2.1e-266 922.2 591 78.2
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 4.6e-266 921.0 592 77.9
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 3.0e-265 918.3 591 78.7
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 5.1e-265 917.5 594 76.8
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 5.1e-265 917.5 594 78.1
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 5.1e-265 917.5 595 78.8
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 8.7e-265 916.8 593 78.6
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 1.1e-264 916.4 591 78.0
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 3.3e-264 914.8 596 76.8
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 7.4e-264 913.7 592 78.4
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 9.7e-264 913.3 596 78.7
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 1.3e-263 912.9 673 71.5
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.3e-263 912.9 595 78.7
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 2.8e-263 911.8 587 78.5
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 2.8e-263 911.8 594 77.3
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 3.7e-263 911.4 593 77.2
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 3.7e-263 911.4 594 77.1
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 3.7e-263 911.4 594 77.1
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 3.7e-263 911.4 594 77.1
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 4.8e-263 911.0 594 77.1
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 4.8e-263 911.0 592 77.7
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 6.3e-263 910.6 587 78.4
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 1.1e-262 909.8 594 76.9
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.4e-262 909.4 593 77.7
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 2.4e-262 908.7 588 79.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.2e-261 906.4 580 78.8
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 3.4e-261 904.8 588 77.0
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 1.3e-260 902.9 595 78.3
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 2.2e-260 902.1 595 77.8
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 2.9e-260 901.7 593 76.1
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 5.0e-260 901.0 593 76.9
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 6.5e-260 900.6 595 77.8
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 6.5e-260 900.6 593 77.6
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 2.1e-258 895.6 596 77.0
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 1.4e-257 892.9 593 75.7
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 1.8e-257 892.5 594 76.3
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 6.7e-257 890.6 612 74.8
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 4.4e-256 887.9 649 71.6
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 1.7e-255 885.9 595 76.8
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 6.3e-255 884.0 614 73.8
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 1.4e-254 882.9 583 77.5
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 5.0e-252 874.4 553 79.0
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 2.5e-251 872.1 561 79.3
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 6.1e-250 867.5 592 73.5
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 3.9e-249 864.8 575 76.5
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.1e-248 863.2 594 74.4
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.4e-246 856.3 552 77.7
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 4.1e-246 854.7 594 73.6
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 2.0e-245 852.4 598 74.2
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.0e-244 850.1 551 78.4
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 3.1e-238 828.6 582 73.0
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 7.7e-237 823.9 582 72.7
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 3.7e-231 805.1 609 69.1
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 5.9e-229 797.7 634 68.3
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 2.8e-226 788.9 594 69.5
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 4.9e-223 778.1 469 83.8
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 1.1e-222 776.9 593 66.9
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.1e-219 766.9 503 77.1
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 1.5e-219 766.5 647 62.1
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 3.6e-218 761.9 588 65.0
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 8.0e-218 760.8 578 67.0
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 3.0e-217 758.8 469 80.4
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 3.0e-217 758.8 497 77.9
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 8.9e-201 704.1 541 68.9
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 3.1e-193 679.1 420 80.0
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 4.7e-186 655.2 503 68.8
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 1.3e-183 647.1 441 75.5
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 5.8e-176 621.7 598 54.0
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 4.6e-173 612.1 590 53.7
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 7.4e-171 604.7 575 54.4
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 2.8e-162 576.2 439 66.5
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 4.5e-152 542.3 367 75.7
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 7.9e-149 531.6 328 82.3
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.7e-146 523.9 523 57.6
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 1.6e-141 507.3 418 64.1
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 6.7e-140 501.9 606 45.7
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 7.4e-131 471.9 579 44.9
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 3.2e-126 456.4 317 73.8
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.6e-125 454.1 279 83.2
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 6.3e-114 415.6 239 84.9
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 2.0e-112 410.6 281 74.7
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 1.1e-105 388.3 440 51.6
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 5.6e-94 349.4 276 65.9
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.1e-93 347.4 316 58.5
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 6.4e-74 282.7 654 31.8
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 2.1e-72 277.7 172 82.0
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 4.3e-70 270.0 567 33.7
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 4.3e-62 243.4 146 80.8
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 1.2e-59 235.3 145 83.4
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 7.6e-59 232.6 138 84.8
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 5.6e-46 189.9 149 69.8
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.7e-45 187.2 125 79.2
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 6.1e-40 169.9 620 26.3
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.2e-33 147.1 96 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 3.0e-31 141.0 120 56.7
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 8.2e-29 132.9 186 40.3
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 5.3e-28 130.2 98 68.4
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 4.2e-25 120.6 98 61.2
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 3.7e-21 107.5 66 77.3
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 4.5e-19 100.5 71 64.8
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.3e-18 99.0 70 65.7
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.3e-18 99.0 78 59.0
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 3.8e-18 97.4 638 22.4
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 4.2e-17 94.0 201 35.3
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 6.1e-16 90.1 49 87.8
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.0e-15 87.8 99 50.5
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 3.0e-15 87.8 48 87.5
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 9.7e-14 82.8 71 53.5
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 8.5e-10 69.7 52 73.1
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.2e-08 65.9 44 77.3
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.2e-08 65.9 44 77.3
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 7.5e-06 56.6 44 65.9


User provided reference genes

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