Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 0.0e+00 1346.6 665 100.0
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 6.5e-301 1036.9 924 62.4
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 1.3e-293 1012.7 927 60.8
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 2.0e-286 988.8 928 59.6
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 8.3e-280 966.8 927 58.3
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 1.5e-268 929.5 927 57.1
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 1.5e-268 929.5 927 57.1
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 6.1e-267 924.1 927 56.7
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 5.0e-261 904.4 951 53.7
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 1.1e-260 903.3 923 55.3
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 9.5e-260 900.2 923 55.0
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 2.8e-259 898.7 951 53.3
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 2.8e-259 898.7 915 56.3
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 2.8e-259 898.7 923 54.9
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 4.7e-259 897.9 924 54.8
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 1.1e-258 896.7 927 55.3
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 4.0e-258 894.8 930 55.4
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 5.2e-258 894.4 927 55.0
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 8.9e-258 893.6 930 54.3
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 4.4e-257 891.3 929 54.3
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 9.8e-257 890.2 924 54.5
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 1.3e-256 889.8 929 53.7
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 1.4e-255 886.3 931 53.9
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 2.1e-254 882.5 938 53.1
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 4.6e-254 881.3 539 81.3
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 8.6e-253 877.1 931 53.9
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 1.6e-251 872.8 539 80.7
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 4.7e-251 871.3 563 78.5
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 1.1e-250 870.2 540 81.5
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 2.3e-250 869.0 543 80.8
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 6.8e-250 867.5 929 53.8
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 1.2e-249 866.7 929 53.7
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 1.2e-249 866.7 932 52.9
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 2.0e-249 865.9 930 53.3
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 9.9e-249 863.6 929 53.5
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 1.4e-247 859.8 930 53.1
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 2.4e-247 859.0 559 77.8
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 1.6e-246 856.3 927 52.2
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 1.3e-245 853.2 943 52.4
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 3.0e-245 852.0 932 52.5
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 3.9e-245 851.7 539 78.8
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 6.6e-245 850.9 539 78.8
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 1.5e-244 849.7 940 52.1
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 1.9e-244 849.4 927 52.2
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 1.9e-244 849.4 928 51.7
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 4.3e-244 848.2 539 78.8
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 9.5e-244 847.0 927 52.6
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 4.7e-243 844.7 926 51.9
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 3.4e-241 838.6 539 78.1
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 4.4e-241 838.2 922 52.2
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 4.4e-241 838.2 539 77.7
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 1.7e-240 836.3 920 52.0
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 2.2e-240 835.9 926 51.7
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 1.1e-239 833.6 539 77.7
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 4.1e-239 831.6 918 52.1
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 7.1e-239 830.9 942 51.3
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 1.6e-238 829.7 539 77.0
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 2.1e-238 829.3 930 51.4
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 2.7e-238 828.9 539 77.0
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 2.7e-238 828.9 539 77.0
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 6.0e-238 827.8 922 52.1
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 1.0e-237 827.0 543 77.2
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 1.7e-237 826.2 543 77.3
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 3.9e-237 825.1 543 77.3
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 5.1e-237 824.7 543 77.2
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 6.6e-237 824.3 539 76.3
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 5.6e-236 821.2 923 51.1
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 9.6e-236 820.5 555 74.4
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 1.2e-235 820.1 928 50.9
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 2.1e-235 819.3 539 76.1
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 2.8e-235 818.9 440 92.7
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 3.6e-235 818.5 925 50.8
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 6.2e-235 817.8 539 76.1
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 8.1e-235 817.4 938 50.3
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 3.1e-234 815.5 941 50.1
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 5.2e-234 814.7 539 76.4
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 1.2e-233 813.5 562 74.4
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 1.5e-233 813.1 933 50.3
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 3.4e-233 812.0 932 50.4
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 7.6e-233 810.8 928 50.6
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 2.9e-232 808.9 915 51.4
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 2.9e-232 808.9 544 75.0
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 1.9e-231 806.2 924 50.5
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 1.9e-231 806.2 539 74.6
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 2.4e-231 805.8 539 74.8
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 2.4e-231 805.8 539 74.8
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 2.4e-231 805.8 539 74.8
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 3.2e-231 805.4 539 74.8
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 3.2e-231 805.4 539 74.8
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 5.4e-231 804.7 543 75.1
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 9.3e-231 803.9 941 50.3
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 3.5e-230 802.0 539 75.9
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 4.6e-230 801.6 937 48.9
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 3.0e-229 798.9 539 74.8
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 3.9e-229 798.5 929 49.6
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 6.6e-229 797.7 933 50.3
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 1.5e-228 796.6 928 49.6
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 2.8e-227 792.3 929 49.2
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 8.4e-224 780.8 538 73.8
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 1.9e-223 779.6 541 74.3
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 1.9e-223 779.6 822 53.2
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 2.4e-218 762.7 970 47.9
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 1.4e-215 753.4 938 48.4
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 6.7e-213 744.6 937 46.6
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 5.3e-210 734.9 925 47.7
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 9.0e-210 734.2 540 69.1
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 3.4e-209 732.3 563 65.5
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 2.9e-208 729.2 877 49.0
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 2.1e-206 723.0 919 47.8
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 1.3e-205 720.3 927 47.7
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 8.7e-205 717.6 875 48.2
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 1.1e-204 717.2 918 46.3
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 5.7e-204 714.9 932 46.7
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 1.5e-201 706.8 511 70.1
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 7.7e-201 704.5 477 75.7
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 5.1e-189 665.2 490 69.0
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 1.4e-183 647.1 833 46.9
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 2.6e-180 636.3 813 47.2
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 3.0e-173 612.8 474 65.2
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 7.7e-169 598.2 861 43.6
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 4.7e-166 589.0 528 58.1
SEGI_00038 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 1.5e-156 557.4 466 59.9
Cpa.g.sc3186.1 Carica papaya HOM05D003523 ORTHO05D004493 4.0e-149 532.7 354 77.1
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 8.6e-128 461.8 737 41.9
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 1.2e-124 451.4 624 45.5
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 3.8e-123 446.4 543 47.1
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 1.8e-117 427.6 552 42.9
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 3.2e-114 416.8 254 80.3
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 1.0e-112 411.8 547 43.3
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 4.0e-109 399.8 730 40.5
Medtr1g072060 Medicago truncatula HOM05D003523 ORTHO05D004493 6.3e-70 269.6 380 43.7
Medtr1g072070 Medicago truncatula HOM05D003523 ORTHO05D004493 1.4e-64 251.9 364 45.6
arahy.Tifrunner.gnm1.ann1.PB6F44 Arachis hypogaea HOM05D003523 ORTHO05D004493 2.0e-55 221.5 219 57.1
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 1.7e-43 181.8 634 26.8
Lsat_1_v5_gn_3_132221 Lactuca sativa HOM05D003523 ORTHO05D004493 1.3e-38 165.6 120 67.5
Medtr2g013190 Medicago truncatula HOM05D003523 ORTHO05D004493 5.4e-37 160.2 196 46.9
TPR.G15630 Trifolium pratense HOM05D003523 ORTHO05D004493 5.4e-37 160.2 225 44.0
Lsat_1_v5_gn_4_122420 Lactuca sativa HOM05D003523 ORTHO05D004493 7.0e-37 159.8 123 65.9
CAN.G1164.7 Capsicum annuum HOM05D003523 ORTHO05D004493 5.0e-35 153.7 109 71.6
TPR.G12099 Trifolium pratense HOM05D003523 ORTHO05D004493 3.1e-32 144.4 109 67.0
Glyma.15G072332 Glycine max HOM05D003523 ORTHO05D004493 6.8e-32 143.3 101 72.3
Lsat_1_v5_gn_4_97940 Lactuca sativa HOM05D003523 ORTHO05D004021 2.4e-29 134.8 107 61.7
Lsat_1_v5_gn_7_19581 Lactuca sativa HOM05D003523 ORTHO05D004493 3.6e-25 120.9 114 57.9
SEGI_30667 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 6.2e-25 120.2 130 51.5
Glyma.15G072266 Glycine max HOM05D003523 ORTHO05D004493 5.2e-24 117.1 81 71.6
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 2.1e-20 105.1 99 57.6
Cpa.g.sc27.67 Carica papaya HOM05D003523 ORTHO05D004493 2.7e-20 104.8 78 71.8
Oeu047005.1 Olea europaea HOM05D003523 ORTHO05D004493 7.8e-20 103.2 86 61.6
GSVIVG01004519001 Vitis vinifera HOM05D003523 ORTHO05D004493 7.8e-20 103.2 57 86.0
Medtr2g013180 Medicago truncatula HOM05D003523 ORTHO05D004493 5.6e-18 97.1 108 50.9
Lsat_1_v5_gn_7_19601 Lactuca sativa HOM05D003523 ORTHO05D004493 6.8e-16 90.1 60 73.3
SHI01796 Sapria himalayana HOM05D003523 ORTHO05D004493 6.8e-16 90.1 133 45.9
Medtr2g013150 Medicago truncatula HOM05D003523 ORTHO05D004493 6.4e-14 83.6 101 51.5
Lsat_1_v5_gn_8_47460 Lactuca sativa HOM05D003523 ORTHO05D004021 1.3e-11 75.9 54 57.4
Psat0s4489g0120 Pisum sativum HOM05D003523 ORTHO05D004493 5.1e-11 73.9 67 61.2
Lsat_1_v5_gn_3_42421 Lactuca sativa HOM05D001849 ORTHO05D004689 9.6e-10 69.7 59 66.1
Medtr3g057930 Medicago truncatula HOM05D003523 ORTHO05D259677 6.8e-08 63.5 139 37.4
Medtr3g057920 Medicago truncatula HOM05D003523 ORTHO05D004493 1.7e-06 58.9 93 38.7
Lsat_1_v5_gn_6_40740 Lactuca sativa HOM05D000146 ORTHO05D002370 2.2e-06 58.5 33 81.8
Lsat_1_v5_gn_8_41901 Lactuca sativa HOM05D003523 ORTHO05D232231 2.2e-06 58.5 33 81.8
Lsat_1_v5_gn_9_124840 Lactuca sativa HOM05D003523 ORTHO05D233239 2.9e-06 58.2 33 81.8
Eucgr.A00068 Eucalyptus grandis HOM05D003523 ORTHO05D004493 8.4e-06 56.6 76 46.1
Lsat_1_v5_gn_6_42641 Lactuca sativa HOM05D000146 ORTHO05D002370 8.4e-06 56.6 33 78.8


User provided reference genes

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