Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1315300 Malus domestica HOM05D003523 ORTHO05D004493 5.4e-278 960.3 464 100.0
MD05G1315900 Malus domestica HOM05D003523 ORTHO05D004493 2.5e-235 818.5 440 92.7
MD05G1316200 Malus domestica HOM05D003523 ORTHO05D004493 2.4e-185 652.5 724 53.0
MD10G1296700 Malus domestica HOM05D003523 ORTHO05D004493 5.6e-182 641.3 727 52.0
Prupe.4G043900 Prunus persica HOM05D003523 ORTHO05D004493 1.4e-177 626.7 728 51.0
RcHm_v2.0_Chr5g0008021 Rosa chinensis HOM05D003523 ORTHO05D004493 2.3e-172 609.4 728 49.7
Dinv07537 Davidia involucrata HOM05D003523 ORTHO05D004493 3.1e-164 582.4 727 47.7
Manes.17G043400 Manihot esculenta HOM05D003523 ORTHO05D004493 3.1e-164 582.4 724 47.4
FvH4_3g04860 Fragaria vesca HOM05D003523 ORTHO05D004493 8.9e-164 580.9 728 48.6
FAN11G2101 Fragaria x ananassa HOM05D003523 ORTHO05D004493 8.9e-164 580.9 728 48.6
FAN21G2488 Fragaria x ananassa HOM05D003523 ORTHO05D004493 3.4e-163 578.9 728 48.5
FAN25G2846 Fragaria x ananassa HOM05D003523 ORTHO05D004493 8.3e-162 574.3 728 48.2
Actinidia05616 Actinidia chinensis HOM05D003523 ORTHO05D004493 1.9e-161 573.2 725 47.2
Ciclev10014062m.g Citrus clementina HOM05D003523 ORTHO05D004493 4.1e-161 572.0 728 47.5
CsaV3_1G012140 Cucumis sativus L. HOM05D003523 ORTHO05D004493 7.1e-161 571.2 728 46.8
Atru.chr10.1936 Acer truncatum HOM05D003523 ORTHO05D004493 1.2e-160 570.5 728 47.7
COL.COLO4_31502 Corchorus olitorius HOM05D003523 ORTHO05D004493 2.1e-160 569.7 724 47.0
MELO3C002588.2 Cucumis melo HOM05D003523 ORTHO05D004493 2.7e-160 569.3 728 46.6
Gorai.011G026100 Gossypium raimondii HOM05D003523 ORTHO05D004493 7.8e-160 567.8 723 47.3
Sed0007449 Sechium edule HOM05D003523 ORTHO05D004493 7.8e-160 567.8 729 46.6
Potri.004G040300 Populus trichocarpa HOM05D003523 ORTHO05D004493 1.0e-159 567.4 730 47.3
Actinidia01893 Actinidia chinensis HOM05D003523 ORTHO05D004493 2.3e-159 566.2 727 46.6
Gohir.D10G024800 Gossypium hirsutum HOM05D003523 ORTHO05D004493 6.6e-159 564.7 723 47.0
Gohir.A10G024100 Gossypium hirsutum HOM05D003523 ORTHO05D004493 1.9e-158 563.1 723 46.9
Potri.011G049700 Populus trichocarpa HOM05D003523 ORTHO05D004493 3.3e-158 562.4 729 47.2
Thecc.06G190800 Theobroma cacao HOM05D003523 ORTHO05D004493 3.3e-158 562.4 724 46.7
Sabra11G0034200 Salix brachista HOM05D003523 ORTHO05D004493 7.3e-158 561.2 729 46.8
CANSAT35G0505 Cannabis sativa HOM05D003523 ORTHO05D004493 2.8e-157 559.3 730 47.0
TWI38G0549 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 4.7e-157 558.5 727 46.1
DCAR_028097 Daucus carota HOM05D003523 ORTHO05D004493 8.1e-157 557.8 734 45.6
TAR627G0569 Trochodendron aralioides HOM05D003523 ORTHO05D004493 1.1e-156 557.4 728 46.2
Sabra04G0024900 Salix brachista HOM05D003523 ORTHO05D004493 2.3e-156 556.2 756 45.9
VMungo0251G3152 Vigna mungo HOM05D003523 ORTHO05D004493 5.2e-156 555.1 719 46.5
Hma1.2p1_0126F.1_g059210 Hydrangea macrophylla HOM05D003523 ORTHO05D004493 4.4e-155 552.0 715 46.9
Glyma.13G241100 Glycine max HOM05D003523 ORTHO05D004493 7.6e-155 551.2 727 45.8
Phvul.002G227600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 1.7e-154 550.1 721 46.0
Glyma.13G181200 Glycine max HOM05D003523 ORTHO05D004493 2.2e-154 549.7 718 46.1
TAR629G1272 Trochodendron aralioides HOM05D003523 ORTHO05D004493 2.2e-154 549.7 722 46.1
Lj2A286G46 Lonicera japonica HOM05D003523 ORTHO05D004493 1.4e-153 547.0 726 45.6
Phvul.006G187600 Phaseolus vulgaris HOM05D003523 ORTHO05D004493 2.4e-153 546.2 727 45.8
Potri.004G040400 Populus trichocarpa HOM05D003523 ORTHO05D004493 2.4e-153 546.2 729 46.4
TWI63G0185 Tripterygium wilfordii HOM05D003523 ORTHO05D004493 2.4e-153 546.2 728 45.1
Cfa000415 Carpinus fangiana HOM05D003523 ORTHO05D004493 3.2e-153 545.8 339 79.6
PGR004G0168 Punica granatum HOM05D003523 ORTHO05D004493 4.1e-153 545.4 730 45.5
arahy.Tifrunner.gnm1.ann1.WE2A0Y Arachis hypogaea HOM05D003523 ORTHO05D004493 1.6e-152 543.5 726 45.5
VMungo0540G1836 Vigna mungo HOM05D003523 ORTHO05D004493 1.6e-152 543.5 727 45.5
CiPaw.09G057400 Carya illinoinensis HOM05D003523 ORTHO05D004493 4.6e-152 542.0 340 80.0
Sopen02g023370 Solanum pennellii HOM05D003523 ORTHO05D004493 4.6e-152 542.0 715 46.2
arahy.Tifrunner.gnm1.ann1.HK023S Arachis hypogaea HOM05D003523 ORTHO05D004493 7.8e-152 541.2 726 45.5
Solyc02g078520.4 Solanum lycopersicum HOM05D003523 ORTHO05D004493 1.3e-151 540.4 715 46.0
Eucgr.D00642 Eucalyptus grandis HOM05D003523 ORTHO05D004493 2.3e-151 539.7 339 78.5
PGSC0003DMG400022382 Solanum tuberosum HOM05D003523 ORTHO05D004493 3.0e-151 539.3 715 46.0
Lj6g0009911 Lotus japonicus HOM05D003523 ORTHO05D004493 8.6e-151 537.7 723 45.2
THA.LOC104812899 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 9.6e-150 534.3 726 44.6
Ca_00312_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 1.6e-149 533.5 727 44.4
Lalb_Chr09g0327601 Lupinus albus HOM05D003523 ORTHO05D004493 2.8e-149 532.7 740 44.5
CSS0028341 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 2.4e-148 529.6 728 44.6
Sc05g0007810 Simmondsia chinensis HOM05D003523 ORTHO05D004493 3.1e-148 529.3 724 43.6
Ah.14g089320 Amaranthus hybridus HOM05D003523 ORTHO05D004493 6.8e-148 528.1 714 45.0
CSS0036865 Camellia sinensis var. sinensis HOM05D003523 ORTHO05D004493 1.5e-147 526.9 339 77.3
Psat7g112840 Pisum sativum HOM05D003523 ORTHO05D004493 2.6e-147 526.2 724 44.8
AUR62016978 Chenopodium quinoa HOM05D003523 ORTHO05D004493 2.9e-146 522.7 709 44.3
Lj4g0014475 Lotus japonicus HOM05D003523 ORTHO05D004493 4.9e-146 521.9 722 44.6
Carub.0006s3284 Capsella rubella HOM05D003523 ORTHO05D004493 1.4e-145 520.4 722 44.0
Lj1A1207T84 Lonicera japonica HOM05D003523 ORTHO05D004493 1.4e-145 520.4 730 44.0
HanXRQChr16g0518201 Helianthus annuus HOM05D003523 ORTHO05D004493 3.2e-145 519.2 720 44.3
THA.LOC104806291 Tarenaya hassleriana HOM05D003523 ORTHO05D004493 5.4e-145 518.5 723 44.0
AT4G04920 Arabidopsis thaliana HOM05D003523 ORTHO05D004493 2.1e-144 516.5 726 43.5
AL6G48430 Arabidopsis lyrata HOM05D003523 ORTHO05D004493 2.7e-144 516.2 720 43.6
Sp6g04040 Schrenkiella parvula HOM05D003523 ORTHO05D004493 2.7e-144 516.2 339 74.6
SpUn0051_0020 Schrenkiella parvula HOM05D003523 ORTHO05D004493 2.7e-144 516.2 339 74.6
TPR.G12094 Trifolium pratense HOM05D003523 ORTHO05D004493 1.0e-143 514.2 339 76.1
CARHR252610 Cardamine hirsuta HOM05D003523 ORTHO05D004493 1.3e-143 513.8 339 74.0
Thhalv10028367m.g Eutrema salsugineum HOM05D003523 ORTHO05D004493 1.3e-143 513.8 339 74.0
EL10Ac8g20345 Beta vulgaris HOM05D003523 ORTHO05D004493 1.7e-143 513.5 734 43.1
Migut.M01189 Erythranthe guttata HOM05D003523 ORTHO05D004493 2.3e-143 513.1 738 43.6
BcaB05g23702 Brassica carinata HOM05D003523 ORTHO05D004493 3.9e-143 512.3 339 73.7
AUR62014791 Chenopodium quinoa HOM05D003523 ORTHO05D004493 5.1e-143 511.9 724 43.5
Peaxi162Scf00379g00211 Petunia axillaris HOM05D003523 ORTHO05D004493 5.1e-143 511.9 339 75.8
Aa31LG9G9570 Aethionema arabicum HOM05D003523 ORTHO05D004493 1.5e-142 510.4 718 43.6
Ca_18531_v3 Cicer arietinum L. HOM05D003523 ORTHO05D004493 4.3e-142 508.8 339 75.8
ECA234G2309 Erigeron canadensis HOM05D003523 ORTHO05D004493 5.6e-142 508.4 728 43.5
arahy.Tifrunner.gnm1.ann1.FP1IKL Arachis hypogaea HOM05D003523 ORTHO05D004493 7.3e-142 508.1 728 43.1
Cc02_g13070 Coffea canephora HOM05D003523 ORTHO05D004493 7.3e-142 508.1 728 42.9
RhsimUnG0044700 Rhododendron simsii HOM05D003523 ORTHO05D004493 1.6e-141 506.9 339 75.2
MSTRG.7305 Avicennia marina HOM05D003523 ORTHO05D004493 2.8e-141 506.1 737 42.7
Lsat_1_v5_gn_4_52460 Lactuca sativa HOM05D003523 ORTHO05D004493 4.8e-141 505.4 339 74.3
arahy.Tifrunner.gnm1.ann1.H4J46B Arachis hypogaea HOM05D003523 ORTHO05D004493 1.1e-140 504.2 728 42.7
BcaC04g21345 Brassica carinata HOM05D003523 ORTHO05D004493 4.0e-140 502.3 339 72.3
C09p32950 Brassica napus HOM05D003523 ORTHO05D004493 4.0e-140 502.3 339 72.3
BolC9t56130H Brassica oleracea HOM05D003523 ORTHO05D004493 4.0e-140 502.3 339 72.3
HPP92_028517 Vanilla planifolia HOM05D003523 ORTHO05D004493 4.0e-140 502.3 622 47.4
A09p25980 Brassica napus HOM05D003523 ORTHO05D004493 5.3e-140 501.9 339 72.3
BraA09t38165Z Brassica rapa HOM05D003523 ORTHO05D004493 5.3e-140 501.9 339 72.3
TPR.G36850 Trifolium pratense HOM05D003523 ORTHO05D004493 1.5e-139 500.4 692 44.1
Medtr4g088965 Medicago truncatula HOM05D003523 ORTHO05D004493 2.0e-139 500.0 339 73.5
MBI17_g03749_MAGBIO Magnolia biondii HOM05D003523 ORTHO05D004493 2.6e-139 499.6 733 41.9
BcaB01g01847 Brassica carinata HOM05D003523 ORTHO05D004493 1.3e-138 497.3 339 71.4
ClCG03G005910 Citrullus lanatus HOM05D003523 ORTHO05D004493 1.3e-138 497.3 728 43.4
Lalb_Chr20g0121981 Lupinus albus HOM05D003523 ORTHO05D004493 2.2e-138 496.5 727 42.4
HanXRQChr16g0511231 Helianthus annuus HOM05D003523 ORTHO05D004493 2.9e-138 496.1 726 43.5
CAN.G1164.6 Capsicum annuum HOM05D003523 ORTHO05D004493 1.3e-135 487.3 339 72.6
SalBow8G0447 Salvia bowleyana HOM05D003523 ORTHO05D004493 1.5e-134 483.8 737 42.2
PSO541G1427 Papaver somniferum HOM05D003523 ORTHO05D004493 5.6e-134 481.9 725 41.7
PSO675G2502 Papaver somniferum HOM05D003523 ORTHO05D004493 1.1e-132 477.6 725 41.2
SGA_v2.0_scaffold7G03976 Striga asiatica HOM05D003523 ORTHO05D004493 5.8e-131 471.9 340 71.2
Aqoxy4G01061 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 5.5e-129 465.3 725 40.8
Psat1g206120 Pisum sativum HOM05D003523 ORTHO05D004493 4.6e-128 462.2 339 67.3
Zm00001eb044560 Zea mays HOM05D003523 ORTHO05D004493 9.6e-126 454.5 340 66.8
CDE08G1359 Ceratophyllum demersum HOM05D003523 ORTHO05D004493 1.3e-125 454.1 340 65.0
Os10g0498700 Oryza sativa ssp. japonica HOM05D003523 ORTHO05D004493 2.4e-124 449.9 731 39.0
GSVIVG01002029001 Vitis vinifera HOM05D003523 ORTHO05D004493 2.0e-123 446.8 735 41.0
ATR0680G247 Amborella trichopoda HOM05D003523 ORTHO05D004493 5.8e-123 445.3 340 66.2
Dinv40538 Davidia involucrata HOM05D003523 ORTHO05D004493 5.8e-123 445.3 624 44.6
Oeu038218.1 Olea europaea HOM05D003523 ORTHO05D004493 1.0e-122 444.5 766 39.8
Duzib192G0623 Durio zibethinus HOM05D003523 ORTHO05D004493 4.9e-122 442.2 738 39.7
HPP92_028530 Vanilla planifolia HOM05D003523 ORTHO05D004493 1.1e-121 441.0 672 41.8
unitig_748.g8004 Utricularia gibba HOM05D003523 ORTHO05D004493 4.2e-121 439.1 326 68.1
Aqoxy1G02553 Aquilegia oxysepala HOM05D003523 ORTHO05D004493 2.8e-117 426.4 714 39.2
Nitab4.5_0006478g0020 Nicotiana tabacum HOM05D003523 ORTHO05D004493 6.5e-114 415.2 715 39.4
Haze_06501 Corylus avellana HOM05D003523 ORTHO05D004493 6.9e-108 395.2 728 38.2
SHI01792 Sapria himalayana HOM05D003523 ORTHO05D004493 1.3e-106 391.0 339 59.0
Medtr2g013160 Medicago truncatula HOM05D003523 ORTHO05D004493 7.2e-105 385.2 657 39.4
Cpa.g.sc3186.1 Carica papaya HOM05D003523 ORTHO05D004493 2.6e-94 350.1 205 82.4
SEGI_00038 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 9.4e-81 305.1 261 57.1
AagrBONN_evm.TU.Sc2ySwM_117.3890 Anthoceros agrestis HOM05D003523 ORTHO05D004493 1.3e-69 268.1 339 40.7
Pp3c9_3120 Physcomitrium patens HOM05D003523 ORTHO05D004493 2.2e-69 267.3 338 43.8
Mapoly0126s0036 Marchantia polymorpha HOM05D003523 ORTHO05D004493 1.7e-66 257.7 346 40.8
Medtr1g072070 Medicago truncatula HOM05D003523 ORTHO05D004493 6.0e-43 179.5 195 52.3
Medtr1g072060 Medicago truncatula HOM05D003523 ORTHO05D004493 1.4e-36 158.3 206 46.1
CAN.G1164.7 Capsicum annuum HOM05D003523 ORTHO05D004493 1.0e-34 152.1 171 53.8
Nn1g04016 Nelumbo nucifera HOM05D003523 ORTHO05D004493 1.0e-34 152.1 508 28.5
Glyma.15G072332 Glycine max HOM05D003523 ORTHO05D004493 8.6e-34 149.1 101 75.2
TPR.G12099 Trifolium pratense HOM05D003523 ORTHO05D004493 2.1e-32 144.4 109 67.9
CBR_g31987 Chara braunii HOM05D003523 ORTHO05D004493 4.6e-27 126.7 371 25.6
SEGI_30667 Sequoiadendron giganteum HOM05D003523 ORTHO05D004493 1.4e-23 115.2 130 50.8
Lsat_1_v5_gn_7_19581 Lactuca sativa HOM05D003523 ORTHO05D004493 2.4e-23 114.4 114 56.1
GSVIVG01002224001 Vitis vinifera HOM05D003523 ORTHO05D004493 1.3e-21 108.6 50 96.0
GSVIVG01004519001 Vitis vinifera HOM05D003523 ORTHO05D004493 2.2e-21 107.8 57 87.7
Psat2g014520 Pisum sativum HOM05D004935 ORTHO05D005676 1.1e-20 105.5 99 58.6
Cpa.g.sc27.67 Carica papaya HOM05D003523 ORTHO05D004493 7.9e-19 99.4 78 67.9
Medtr2g013180 Medicago truncatula HOM05D003523 ORTHO05D004493 2.5e-17 94.4 104 53.8
Lsat_1_v5_gn_7_19601 Lactuca sativa HOM05D003523 ORTHO05D004493 6.2e-16 89.7 60 73.3
SHI01796 Sapria himalayana HOM05D003523 ORTHO05D004493 7.6e-14 82.8 131 43.5
Medtr2g013150 Medicago truncatula HOM05D003523 ORTHO05D004493 9.9e-14 82.4 101 51.5
Psat0s4489g0120 Pisum sativum HOM05D003523 ORTHO05D004493 4.2e-12 77.0 67 62.7
Eucgr.A00068 Eucalyptus grandis HOM05D003523 ORTHO05D004493 1.0e-05 55.8 76 44.7


User provided reference genes

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