Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 3.6e-258 894.4 455 100.0
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 3.7e-239 831.2 484 88.4
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 1.7e-236 822.4 456 92.3
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 5.7e-224 780.8 454 85.9
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 1.8e-222 775.8 454 85.0
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 1.6e-218 762.7 468 81.8
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 5.8e-216 754.2 455 82.0
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 5.8e-216 754.2 453 83.2
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 7.5e-216 753.8 453 81.7
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 8.3e-215 750.4 455 82.2
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 3.5e-213 745.0 456 81.6
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 3.5e-213 745.0 453 81.7
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 7.8e-213 743.8 455 81.5
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 2.3e-212 742.3 453 81.0
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 2.5e-211 738.8 457 81.2
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 4.7e-210 734.6 453 80.6
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 6.2e-210 734.2 453 80.1
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 4.0e-209 731.5 453 80.6
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 2.6e-208 728.8 453 79.7
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 1.3e-207 726.5 455 80.4
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 2.2e-207 725.7 456 78.1
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 2.2e-207 725.7 456 78.1
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 4.9e-207 724.5 456 78.5
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 1.4e-206 723.0 453 79.7
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 7.1e-206 720.7 453 78.8
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 6.0e-205 717.6 452 78.3
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 1.0e-204 716.8 453 77.9
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 3.9e-204 714.9 453 78.8
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 5.1e-204 714.5 453 77.7
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 2.5e-203 712.2 454 78.0
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 2.5e-203 712.2 455 77.4
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 3.3e-203 711.8 454 77.5
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 5.6e-203 711.1 456 77.4
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 5.6e-203 711.1 453 77.3
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.6e-202 709.5 459 78.4
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.8e-202 708.8 453 78.1
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 3.6e-202 708.4 453 77.7
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 4.7e-202 708.0 454 78.9
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 1.1e-201 706.8 453 78.1
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.8e-201 706.1 468 76.9
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 2.3e-201 705.7 455 76.5
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 2.3e-201 705.7 489 73.4
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 9.9e-200 700.3 461 75.5
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 2.2e-199 699.1 454 77.5
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 6.4e-199 697.6 449 77.3
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 1.9e-198 696.0 454 76.0
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 1.9e-198 696.0 454 76.2
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 2.4e-198 695.7 458 76.2
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 2.4e-198 695.7 455 75.8
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 3.2e-198 695.3 457 75.7
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 1.6e-197 693.0 455 75.6
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 2.7e-197 692.2 455 75.6
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 3.5e-197 691.8 455 75.6
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 3.9e-196 688.3 453 75.7
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 3.9e-196 688.3 455 74.9
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 1.1e-195 686.8 460 75.7
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 1.1e-195 686.8 455 74.7
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 1.5e-195 686.4 452 75.0
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 3.3e-195 685.3 455 74.5
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 1.4e-193 679.9 453 74.0
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 2.4e-193 679.1 483 72.9
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 1.5e-192 676.4 446 74.7
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 2.6e-192 675.6 455 73.8
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 9.9e-192 673.7 477 71.7
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 3.5e-189 665.2 453 71.3
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 3.0e-188 662.1 471 69.6
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 1.5e-187 659.8 453 74.0
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 3.3e-187 658.7 511 68.9
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 3.3e-187 658.7 475 72.2
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 3.3e-187 658.7 416 78.6
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 1.3e-186 656.8 490 69.8
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 1.6e-186 656.4 444 75.9
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 1.6e-186 656.4 463 72.6
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 2.4e-185 652.5 456 73.7
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 3.4e-184 648.7 453 70.2
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 3.2e-182 642.1 449 72.8
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 5.4e-182 641.3 469 69.9
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.1e-181 639.4 491 69.7
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 5.1e-180 634.8 483 68.3
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 3.3e-179 632.1 409 76.3
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 6.2e-178 627.9 462 71.0
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 2.6e-176 622.5 453 71.5
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 4.5e-176 621.7 453 70.2
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 1.4e-169 600.1 355 84.2
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 3.1e-169 599.0 384 77.6
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 1.5e-168 596.7 455 69.9
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 3.4e-168 595.5 496 64.1
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 5.8e-168 594.7 399 73.7
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 2.2e-167 592.8 557 59.1
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 4.2e-166 588.6 516 61.0
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 7.1e-166 587.8 454 67.6
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 1.0e-159 567.4 405 71.1
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 5.0e-159 565.1 449 65.9
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 5.9e-152 541.6 342 77.2
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 7.2e-150 534.6 487 59.3
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 3.6e-149 532.3 434 64.1
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 6.1e-149 531.6 325 79.7
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 7.7e-144 514.6 457 54.5
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 8.5e-135 484.6 296 82.1
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 7.2e-134 481.5 457 52.1
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.3e-127 460.7 418 59.3
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 7.2e-126 454.9 296 75.7
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 2.2e-122 443.4 507 49.7
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 1.3e-119 434.1 455 48.8
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 5.9e-112 408.7 341 65.1
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 2.1e-109 400.2 446 46.9
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 2.1e-109 400.2 268 74.6
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 2.9e-106 389.8 276 72.5
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 3.2e-105 386.3 446 43.9
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 4.3e-102 375.9 230 81.3
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 6.2e-101 372.1 435 50.8
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 3.4e-91 339.7 205 81.5
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.3e-82 311.2 186 83.3
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 2.2e-74 283.9 260 60.0
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 8.4e-74 282.0 283 55.5
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 5.3e-68 262.7 240 60.0
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 2.3e-63 247.3 176 71.6
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 3.3e-62 243.4 228 51.3
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 7.4e-62 242.3 148 78.4
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 2.4e-60 237.3 325 46.8
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 1.1e-57 228.4 467 31.3
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 1.6e-56 224.6 456 31.4
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 5.1e-55 219.5 526 30.8
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.3e-53 214.9 130 80.8
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.3e-50 204.9 555 27.6
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 1.1e-33 148.7 111 69.4
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.1e-32 144.4 118 61.0
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 6.7e-31 139.4 99 67.7
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 6.3e-29 132.9 98 62.2
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 6.3e-29 132.9 98 62.2
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 8.0e-24 115.9 70 80.0
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 6.7e-23 112.8 69 78.3
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 6.7e-23 112.8 98 56.1
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 3.3e-22 110.5 69 76.8
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 1.3e-21 108.6 58 86.2
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.1e-20 103.6 84 59.5
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 5.3e-20 103.2 187 40.1
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 5.7e-14 83.2 70 65.7
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 7.5e-14 82.8 52 73.1
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 9.7e-14 82.4 66 62.1
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 8.3e-13 79.3 90 51.1
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 2.4e-12 77.8 57 64.9
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 5.3e-12 76.6 51 70.6
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 7.0e-12 76.3 58 55.2
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 3.5e-11 73.9 60 61.7
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.8e-07 61.6 38 73.7
Glyma.13G152440 Glycine max HOM05D005098 ORTHO05D046693 6.8e-07 59.7 39 76.9


User provided reference genes

Program Settings