Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 2.8e-32 141.4 73 100.0
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 2.6e-25 118.2 73 86.3
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 3.8e-21 104.4 73 79.5
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 9.5e-20 99.8 67 79.1
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 9.5e-20 99.8 67 79.1
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 9.5e-20 99.8 67 79.1
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 9.5e-20 99.8 67 79.1
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 9.5e-20 99.8 67 79.1
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 2.8e-19 98.2 67 77.6
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 1.2e-17 92.8 73 69.9
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 1.5e-17 92.4 68 73.5
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 5.7e-17 90.5 67 71.6
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 2.8e-16 88.2 67 68.7
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 2.8e-16 88.2 67 74.6
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 2.8e-16 88.2 67 74.6
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 8.3e-16 86.7 67 73.1
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 1.1e-15 86.3 67 67.2
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 1.1e-15 86.3 67 73.1
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 1.4e-15 85.9 72 65.3
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 2.4e-15 85.1 67 73.1
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 2.4e-15 85.1 67 73.1
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 3.2e-15 84.7 72 65.3
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 3.2e-15 84.7 67 73.1
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 4.1e-15 84.3 67 70.1
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 4.1e-15 84.3 73 68.5
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 9.2e-15 83.2 68 69.1
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 9.2e-15 83.2 67 71.6
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 9.2e-15 83.2 73 67.1
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 1.2e-14 82.8 80 60.0
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 1.2e-14 82.8 72 62.5
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 1.6e-14 82.4 72 62.5
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 1.6e-14 82.4 67 70.1
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 1.6e-14 82.4 74 60.8
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.7e-14 81.6 72 65.3
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 2.7e-14 81.6 72 65.3
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 3.5e-14 81.3 53 79.2
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 4.6e-14 80.9 52 78.8
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 5.9e-14 80.5 67 62.7
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 5.9e-14 80.5 70 62.9
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 1.0e-13 79.7 67 67.2
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 1.3e-13 79.3 53 77.4
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 1.3e-13 79.3 69 62.3
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 2.3e-13 78.6 68 69.1
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 2.3e-13 78.6 67 56.7
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 2.9e-13 78.2 68 66.2
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 3.9e-13 77.8 67 64.2
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 3.9e-13 77.8 53 75.5
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 5.0e-13 77.4 75 62.7
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 5.0e-13 77.4 56 71.4
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 5.0e-13 77.4 78 62.8
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 6.6e-13 77.0 76 57.9
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 6.6e-13 77.0 75 62.7
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 8.6e-13 76.6 65 69.2
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 8.6e-13 76.6 76 57.9
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 8.6e-13 76.6 76 57.9
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 8.6e-13 76.6 76 57.9
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 8.6e-13 76.6 76 57.9
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 1.1e-12 76.3 76 56.6
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.1e-12 76.3 67 62.7
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 1.1e-12 76.3 53 73.6
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 1.1e-12 76.3 56 69.6
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 1.5e-12 75.9 67 62.7
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 1.9e-12 75.5 76 56.6
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 1.9e-12 75.5 76 60.5
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 3.3e-12 74.7 76 63.2
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 3.3e-12 74.7 79 59.5
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 4.3e-12 74.3 76 55.3
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 4.3e-12 74.3 53 71.7
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 4.3e-12 74.3 57 66.7
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 1.2e-11 72.8 53 73.6
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 1.2e-11 72.8 75 61.3
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 1.2e-11 72.8 54 70.4
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 2.1e-11 72.0 85 51.8
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 2.1e-11 72.0 53 69.8
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 2.8e-11 71.6 52 71.2
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 2.8e-11 71.6 52 71.2
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 2.8e-11 71.6 80 57.5
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 3.6e-11 71.2 55 69.1
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 4.7e-11 70.9 79 57.0
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 6.1e-11 70.5 75 58.7
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 8.0e-11 70.1 76 56.6
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 8.0e-11 70.1 56 67.9
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 8.0e-11 70.1 75 57.3
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 1.8e-10 68.9 52 69.2
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 3.1e-10 68.2 57 61.4
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 3.1e-10 68.2 57 61.4
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 3.1e-10 68.2 52 67.3
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 4.0e-10 67.8 51 66.7
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 6.8e-10 67.0 68 61.8
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 6.8e-10 67.0 52 67.3
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 3.4e-09 64.7 52 63.5
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 9.8e-09 63.2 53 62.3
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 9.8e-09 63.2 65 60.0
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 1.7e-08 62.4 66 51.5
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 2.9e-08 61.6 53 58.5
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 1.1e-07 59.7 52 59.6


User provided reference genes

Program Settings