Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1180100 Malus domestica HOM05D001529 ORTHO05D018658 4.0e-128 461.5 234 100.0
MD09G1120400 Malus domestica HOM05D001529 ORTHO05D007595 2.9e-94 349.0 203 89.2
MD00G1024000 Malus domestica HOM05D001529 ORTHO05D018658 1.4e-85 320.1 214 80.4
RcHm_v2.0_Chr2g0156891 Rosa chinensis HOM05D001529 ORTHO05D007595 4.2e-77 292.0 207 76.8
FAN05G0710 Fragaria x ananassa HOM05D001529 ORTHO05D007595 6.0e-76 288.1 203 74.4
FvH4_6g41340 Fragaria vesca HOM05D001529 ORTHO05D007595 3.9e-75 285.4 203 73.4
FAN09G0877 Fragaria x ananassa HOM05D001529 ORTHO05D007595 1.1e-66 257.3 201 68.2
CANSAT64G0296 Cannabis sativa HOM05D001529 ORTHO05D007595 4.3e-66 255.4 210 66.7
MD15G1401400 Malus domestica HOM05D001529 ORTHO05D018658 5.6e-66 255.0 144 91.0
TWI36G1606 Tripterygium wilfordii HOM05D001529 ORTHO05D007595 1.1e-61 240.7 205 65.9
GSVIVG01030033001 Vitis vinifera HOM05D001529 ORTHO05D007595 2.5e-61 239.6 210 64.8
Manes.12G062800 Manihot esculenta HOM05D001529 ORTHO05D007595 7.9e-60 234.6 158 73.4
Dinv07847 Davidia involucrata HOM05D001529 ORTHO05D007595 2.3e-59 233.0 216 61.6
MD17G1111300 Malus domestica HOM05D001529 ORTHO05D018658 2.3e-59 233.0 143 83.2
CSS0013229 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 3.0e-59 232.6 216 58.8
Rhsim04G0043200 Rhododendron simsii HOM05D001529 ORTHO05D007595 3.9e-59 232.3 218 61.9
Actinidia21451 Actinidia chinensis HOM05D001529 ORTHO05D007595 5.1e-59 231.9 220 61.8
ClCG02G002590 Citrullus lanatus HOM05D001529 ORTHO05D007595 1.1e-58 230.7 209 61.7
vmacro09386 Vaccinium macrocarpon HOM05D001529 ORTHO05D007595 1.1e-58 230.7 214 62.1
MD05G1333800 Malus domestica HOM05D001529 ORTHO05D018658 1.5e-58 230.3 126 90.5
CiPaw.03G277800 Carya illinoinensis HOM05D001529 ORTHO05D007595 3.3e-58 229.2 199 63.3
CsaV3_7G002750 Cucumis sativus L. HOM05D001529 ORTHO05D007595 3.3e-58 229.2 209 60.8
ECA234G3620 Erigeron canadensis HOM05D001529 ORTHO05D007595 5.7e-58 228.4 213 61.0
HanXRQChr10g0306381 Helianthus annuus HOM05D001529 ORTHO05D007595 2.1e-57 226.5 216 59.3
Lsat_1_v5_gn_5_123180 Lactuca sativa HOM05D001529 ORTHO05D007595 2.8e-57 226.1 215 60.0
MELO3C024216.2 Cucumis melo HOM05D001529 ORTHO05D007595 8.2e-57 224.6 209 60.8
Nitab4.5_0004215g0030 Nicotiana tabacum HOM05D001529 ORTHO05D007595 1.8e-56 223.4 177 63.3
Cc00_g04140 Coffea canephora HOM05D001529 ORTHO05D007595 4.1e-56 222.2 220 60.5
Nitab4.5_0004358g0030 Nicotiana tabacum HOM05D001529 ORTHO05D007595 6.9e-56 221.5 193 60.6
PSO541G2760 Papaver somniferum HOM05D001529 ORTHO05D007595 1.2e-55 220.7 215 57.2
Sed0023062 Sechium edule HOM05D001529 ORTHO05D007595 1.2e-55 220.7 211 59.2
Thecc.01G188800 Theobroma cacao HOM05D001529 ORTHO05D007595 1.2e-55 220.7 205 61.5
Lj1C790T8 Lonicera japonica HOM05D001529 ORTHO05D007595 1.5e-55 220.3 213 58.7
AUR62000956 Chenopodium quinoa HOM05D001529 ORTHO05D007595 2.6e-55 219.5 217 58.1
Ah.06g192740 Amaranthus hybridus HOM05D001529 ORTHO05D007595 3.4e-55 219.2 220 56.4
Hma1.2p1_0405F.1_g145720 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 3.4e-55 219.2 212 60.8
PSO675G8054 Papaver somniferum HOM05D001529 ORTHO05D007595 3.4e-55 219.2 210 56.7
QL08p028982 Quercus lobata HOM05D001529 ORTHO05D007595 3.4e-55 219.2 205 60.5
Sabra14G0123900 Salix brachista HOM05D001529 ORTHO05D007595 3.4e-55 219.2 219 56.6
TAR626G0907 Trochodendron aralioides HOM05D001529 ORTHO05D007595 3.4e-55 219.2 164 68.9
Aa31sc53G50 Aethionema arabicum HOM05D001529 ORTHO05D007595 5.9e-55 218.4 191 61.3
THA.LOC104815352 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 7.6e-55 218.0 203 61.1
Carub.0003s2643 Capsella rubella HOM05D001529 ORTHO05D007595 1.0e-54 217.6 153 71.9
HPP92_022799 Vanilla planifolia HOM05D001529 ORTHO05D007595 1.0e-54 217.6 155 71.0
Thhalv10002438m.g Eutrema salsugineum HOM05D001529 ORTHO05D007595 1.3e-54 217.2 196 61.7
AT2G04842 Arabidopsis thaliana HOM05D001529 ORTHO05D007595 1.7e-54 216.9 191 62.3
Duzib138G1061 Durio zibethinus HOM05D001529 ORTHO05D007595 1.7e-54 216.9 206 59.7
Hma1.2p1_0405F.1_g145730 Hydrangea macrophylla HOM05D001529 ORTHO05D007595 1.7e-54 216.9 211 60.7
QL93p0116_0063 Quercus lobata HOM05D001529 ORTHO05D007595 1.7e-54 216.9 202 59.9
CAN.G897.4 Capsicum annuum HOM05D001529 ORTHO05D007595 2.2e-54 216.5 201 58.2
Medtr3g083180 Medicago truncatula HOM05D001529 ORTHO05D007595 2.2e-54 216.5 128 77.3
Eucgr.A01062 Eucalyptus grandis HOM05D001529 ORTHO05D007595 2.9e-54 216.1 189 60.8
Nn1g03283 Nelumbo nucifera HOM05D001529 ORTHO05D007595 2.9e-54 216.1 154 71.4
Potri.014G162200 Populus trichocarpa HOM05D001529 ORTHO05D007595 2.9e-54 216.1 220 55.9
VMungo1080G0307 Vigna mungo HOM05D001529 ORTHO05D007595 2.9e-54 216.1 149 71.8
Aqoxy4G02192 Aquilegia oxysepala HOM05D001529 ORTHO05D007595 3.8e-54 215.7 155 67.1
TPR.G19324 Trifolium pratense HOM05D001529 ORTHO05D007595 3.8e-54 215.7 130 75.4
CDE07G1746 Ceratophyllum demersum HOM05D001529 ORTHO05D007595 5.0e-54 215.3 203 57.1
Os02g0538000 Oryza sativa ssp. japonica HOM05D001529 ORTHO05D007595 5.0e-54 215.3 129 79.1
Sopen07g024500 Solanum pennellii HOM05D001529 ORTHO05D007595 5.0e-54 215.3 128 78.1
AL3G42430 Arabidopsis lyrata HOM05D001529 ORTHO05D007595 6.5e-54 214.9 153 69.9
Sp3g23420 Schrenkiella parvula HOM05D001529 ORTHO05D007595 6.5e-54 214.9 196 61.7
Lj6g0006977 Lotus japonicus HOM05D001529 ORTHO05D007595 8.5e-54 214.5 119 83.2
Lalb_Chr14g0362561 Lupinus albus HOM05D001529 ORTHO05D007595 8.5e-54 214.5 187 61.5
Solyc07g048080.4 Solanum lycopersicum HOM05D001529 ORTHO05D007595 8.5e-54 214.5 128 78.1
Migut.H01288 Erythranthe guttata HOM05D001529 ORTHO05D007595 1.4e-53 213.8 118 83.1
Gohir.A07G167800 Gossypium hirsutum HOM05D001529 ORTHO05D007595 1.9e-53 213.4 179 63.7
MBI19_g06153_MAGBIO Magnolia biondii HOM05D001529 ORTHO05D007595 1.9e-53 213.4 119 85.7
Zm00001eb325920 Zea mays HOM05D001529 ORTHO05D007595 3.2e-53 212.6 193 62.7
A03p44470 Brassica napus HOM05D001529 ORTHO05D007595 4.2e-53 212.2 157 68.8
BraA03t13580Z Brassica rapa HOM05D001529 ORTHO05D007595 4.2e-53 212.2 197 60.9
DCAR_021112 Daucus carota HOM05D001529 ORTHO05D007595 5.5e-53 211.8 148 68.9
Peaxi162Scf02035g00017 Petunia axillaris HOM05D001529 ORTHO05D007595 5.5e-53 211.8 150 67.3
arahy.Tifrunner.gnm1.ann1.6FNM9R Arachis hypogaea HOM05D001529 ORTHO05D007595 7.2e-53 211.5 206 57.3
arahy.Tifrunner.gnm1.ann1.9BA4YH Arachis hypogaea HOM05D001529 ORTHO05D007595 7.2e-53 211.5 206 57.3
AUR62005012 Chenopodium quinoa HOM05D001529 ORTHO05D007595 7.2e-53 211.5 141 71.6
Gohir.D07G173400 Gossypium hirsutum HOM05D001529 ORTHO05D007595 7.2e-53 211.5 200 60.0
Gorai.001G193700 Gossypium raimondii HOM05D001529 ORTHO05D007595 7.2e-53 211.5 200 60.0
PGSC0003DMG400006139 Solanum tuberosum HOM05D001529 ORTHO05D007595 7.2e-53 211.5 200 56.0
THA.LOC104826614 Tarenaya hassleriana HOM05D001529 ORTHO05D007595 9.3e-53 211.1 198 60.1
Glyma.19G191200 Glycine max HOM05D001529 ORTHO05D007595 1.2e-52 210.7 153 68.0
arahy.Tifrunner.gnm1.ann1.TVN328 Arachis hypogaea HOM05D001529 ORTHO05D007595 2.1e-52 209.9 211 56.9
Sc20g0003910 Simmondsia chinensis HOM05D001529 ORTHO05D007595 2.1e-52 209.9 201 56.7
ATR0712G164 Amborella trichopoda HOM05D001529 ORTHO05D007595 2.7e-52 209.5 159 68.6
EL10Ac4g09205 Beta vulgaris HOM05D001529 ORTHO05D007595 3.6e-52 209.1 225 54.7
C03p55280 Brassica napus HOM05D001529 ORTHO05D007595 7.9e-52 208.0 198 59.6
BolC3t17800H Brassica oleracea HOM05D001529 ORTHO05D007595 7.9e-52 208.0 198 59.6
PGR042G1774 Punica granatum HOM05D001529 ORTHO05D007595 7.9e-52 208.0 217 55.3
Atru.chr6.3341 Acer truncatum HOM05D001529 ORTHO05D007595 6.7e-51 204.9 122 78.7
MSTRG.12244 Avicennia marina HOM05D001529 ORTHO05D007595 1.1e-50 204.1 208 56.2
SEGI_09505 Sequoiadendron giganteum HOM05D001529 ORTHO05D007595 1.5e-50 203.8 214 54.2
SGA_v2.0_scaffold49G18408 Striga asiatica HOM05D001529 ORTHO05D007595 4.3e-50 202.2 207 55.6
Ciclev10018290m.g Citrus clementina HOM05D001529 ORTHO05D007595 5.7e-50 201.8 192 60.4
unitig_62.g23257 Utricularia gibba HOM05D001529 ORTHO05D007595 5.7e-50 201.8 118 77.1
Pp3c2_11130 Physcomitrium patens HOM05D001529 ORTHO05D007595 5.9e-47 191.8 157 63.1
Mapoly0096s0034 Marchantia polymorpha HOM05D001529 ORTHO05D007595 1.0e-46 191.0 133 70.7
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 3.8e-46 189.1 119 75.6
Pp3c14_20630 Physcomitrium patens HOM05D001529 ORTHO05D007595 1.2e-44 184.1 191 53.9
PRCOL_00005026 Prasinoderma coloniale HOM05D001529 ORTHO05D007595 1.1e-42 177.6 117 70.9
MD15G1401900 Malus domestica HOM05D001529 ORTHO05D018658 3.3e-42 176.0 94 92.6
Psat5g104480 Pisum sativum HOM05D001529 ORTHO05D007595 1.7e-41 173.7 95 83.2
Hund24142 Selenicereus undatus HOM05D001529 ORTHO05D007595 1.8e-40 170.2 99 78.8
MCO11G246 Micromonas commoda HOM05D001529 ORTHO05D007595 7.7e-39 164.9 118 68.6
Eucgr.A01064 Eucalyptus grandis HOM05D001529 ORTHO05D007595 8.5e-38 161.4 86 84.9
Eucgr.A01066 Eucalyptus grandis HOM05D001529 ORTHO05D007595 1.8e-32 143.7 77 83.1
Cre10.g421600 Chlamydomonas reinhardtii HOM05D001529 ORTHO05D007595 7.0e-32 141.7 122 58.2
MD04G1109700 Malus domestica HOM05D001529 ORTHO05D245509 1.6e-31 140.6 91 82.4
CsaV3_4G036250 Cucumis sativus L. HOM05D001529 ORTHO05D007595 3.5e-23 112.8 65 81.5
BcaB08g34493 Brassica carinata HOM05D001529 ORTHO05D018658 1.0e-22 111.3 65 78.5
Glyma.U011002 Glycine max HOM05D001529 ORTHO05D007595 3.8e-22 109.4 56 87.5
CSS0037422 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 1.9e-21 107.1 71 70.4
CSS0041772 Camellia sinensis var. sinensis HOM05D001529 ORTHO05D007595 1.9e-21 107.1 71 70.4
CDE04G0319 Ceratophyllum demersum HOM05D001529 ORTHO05D018658 6.3e-17 92.0 53 75.5
Ca_16364_v3 Cicer arietinum L. HOM05D001529 ORTHO05D007595 1.8e-16 90.5 51 80.4
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 1.2e-12 77.8 69 58.0
CBR_g3851 Chara braunii HOM05D001529 ORTHO05D007595 4.7e-12 75.9 48 72.9
MD15G1402000 Malus domestica HOM05D001529 ORTHO05D007595 4.4e-10 69.3 35 94.3
SMO139G0098 Selaginella moellendorffii HOM05D009802 ORTHO05D050857 4.1e-08 62.8 47 68.1
Pp3c1_30300 Physcomitrium patens HOM05D001529 ORTHO05D050322 5.4e-08 62.4 44 65.9
PRCOL_00003363 Prasinoderma coloniale HOM05D001529 ORTHO05D003309 4.5e-07 59.3 157 31.8
SMO145G0067 Selaginella moellendorffii HOM05D009802 ORTHO05D050857 1.7e-06 57.4 45 64.4
MCO11G785 Micromonas commoda HOM05D001529 ORTHO05D003309 8.6e-06 55.1 104 37.5


User provided reference genes

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