Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 2228.0 1114 100.0
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1735.7 1124 79.3
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1631.7 1122 74.2
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1544.6 1121 71.0
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1489.6 1121 69.6
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1482.2 1121 69.0
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1439.1 1112 67.2
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1406.7 1119 64.6
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1401.7 1119 64.8
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1366.7 1123 63.3
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1355.1 1123 62.8
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1331.2 1119 62.1
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1317.0 1119 62.6
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1312.7 1124 60.0
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1308.9 1127 60.2
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1307.7 1122 60.7
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1304.3 1121 60.5
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1300.0 1127 60.2
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1278.1 1123 59.9
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1274.6 1120 59.2
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1268.4 1122 59.1
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1262.7 1120 58.8
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1258.8 1125 58.8
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1252.3 1125 58.9
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1238.4 1123 57.4
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1227.6 1123 58.3
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1224.2 1147 57.1
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1224.2 1123 57.5
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1223.8 1127 58.0
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1223.0 1124 58.5
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1216.8 1123 58.1
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1214.9 1121 57.3
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1208.0 1121 57.5
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1199.9 1120 56.7
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1198.7 1121 56.4
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1197.6 1122 56.2
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1189.5 1121 56.2
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1186.8 1120 57.1
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1182.2 1138 55.4
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1182.2 1138 55.4
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1181.8 1122 55.9
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1175.6 1122 55.2
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1167.9 1071 57.8
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1165.2 1121 55.2
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1162.5 1108 55.3
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1162.1 1128 55.0
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1161.4 1128 54.9
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1157.5 1129 54.9
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1152.9 1121 54.8
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1152.9 1121 54.7
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1149.8 1124 54.6
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1148.3 1119 54.6
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1136.7 1147 53.4
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1131.3 1121 54.0
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1129.8 1123 53.6
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1117.4 1121 52.6
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1117.1 1118 53.8
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1110.9 1118 53.8
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1099.7 1123 51.5
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1083.2 1153 51.1
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1079.3 1123 52.5
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1077.0 1124 52.9
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1075.1 1119 52.6
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 1.5e-310 1069.7 1121 50.1
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 1.5e-305 1053.1 1124 52.4
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 5.6e-305 1051.2 1119 51.6
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 3.3e-297 1025.4 1135 49.6
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 4.0e-295 1018.5 1128 49.2
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 2.6e-294 1015.8 1148 48.8
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 7.6e-294 1014.2 1130 49.5
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 7.6e-294 1014.2 938 57.8
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 1.4e-292 1010.0 1122 49.6
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 3.2e-292 1008.8 1000 54.2
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 1.6e-291 1006.5 1128 49.4
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 2.1e-291 1006.1 1140 49.0
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 7.8e-291 1004.2 1123 49.0
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 2.3e-290 1002.7 1126 48.7
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 3.9e-290 1001.9 1170 48.5
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 8.7e-290 1000.7 1127 48.7
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 8.7e-290 1000.7 1122 49.2
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 1.9e-289 999.6 1128 48.7
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 5.6e-289 998.0 1059 51.6
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 9.9e-286 987.3 1155 47.4
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 4.9e-285 984.9 1157 47.4
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 2.4e-284 982.6 1128 48.2
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 5.4e-284 981.5 1124 49.0
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 2.6e-278 962.6 995 52.6
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 2.4e-276 956.1 1121 46.8
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 8.7e-274 947.6 1121 47.1
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.4e-270 935.6 1142 46.9
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.5e-262 910.2 1173 45.4
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 5.5e-252 875.2 479 92.7
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 9.7e-241 837.8 1121 43.0
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.7e-232 810.4 1123 41.3
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 2.6e-209 733.4 1000 43.3
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 2.0e-193 680.6 618 57.8
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 6.6e-189 665.6 591 58.5
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 5.4e-183 646.0 599 57.4
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 1.8e-178 630.9 1128 35.8
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 5.2e-178 629.4 1129 36.0
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 1.3e-176 624.8 1136 35.4
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.3e-172 610.1 639 53.2
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 7.1e-167 592.4 533 57.8
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.7e-160 571.2 747 43.6
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 7.4e-148 529.3 1115 32.9
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 2.7e-134 484.2 609 45.8
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 5.1e-133 479.9 608 45.9
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 6.7e-133 479.6 609 45.6
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.3e-131 475.3 577 47.1
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.0e-128 465.7 531 47.8
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 3.7e-123 447.2 231 97.0
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 9.7e-116 422.5 576 42.4
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 3.7e-115 420.6 381 57.5
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 3.2e-111 407.5 533 46.0
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.6e-108 397.9 559 41.7
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 8.0e-102 376.3 352 55.4
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 1.4e-98 365.5 196 96.4
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 2.5e-95 354.8 183 97.8
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 4.2e-95 354.0 505 41.2
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 3.7e-91 340.9 486 45.5
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 4.9e-91 340.5 915 29.1
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 2.1e-86 325.1 206 75.2
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.5e-84 318.9 323 52.0
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.3e-80 305.8 456 39.7
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 4.7e-78 297.4 306 53.3
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 5.1e-72 277.3 282 56.0
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 7.8e-65 253.4 387 39.5
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.9e-55 222.2 329 40.4
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 9.9e-52 209.9 185 53.5
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 1.3e-48 199.5 105 100.0
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 1.8e-45 189.1 101 99.0
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.2e-43 182.2 124 68.5
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.4e-42 179.5 313 37.1
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 3.3e-39 168.3 177 52.5
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 5.6e-39 167.5 116 68.1
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.3e-38 166.4 469 28.4
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 1.8e-37 162.5 137 57.7
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 2.5e-34 152.1 187 47.1
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 3.5e-33 148.3 399 31.1
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 5.7e-31 141.0 146 45.9
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 4.8e-30 137.9 110 53.6
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 2.6e-28 132.1 110 57.3
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 1.7e-27 129.4 114 59.6
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 1.9e-23 115.9 115 53.9
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 4.8e-14 84.7 65 61.5
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 4.5e-12 78.2 269 26.0
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 1.0e-08 67.0 55 49.1
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 4.4e-07 61.6 61 49.2


User provided reference genes

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