Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 1.9e-130 469.2 235 100.0
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 3.8e-94 348.6 234 74.4
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 8.4e-94 347.4 235 74.0
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 2.4e-93 345.9 235 73.6
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 9.3e-93 344.0 234 73.5
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 2.7e-92 342.4 234 73.1
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 2.3e-91 339.3 235 72.3
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 9.6e-90 334.0 235 71.5
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 9.6e-90 334.0 235 71.5
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 1.6e-89 333.2 233 72.1
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 4.8e-89 331.6 234 69.7
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 1.1e-88 330.5 235 69.4
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 2.4e-88 329.3 235 69.8
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 6.9e-88 327.8 235 70.6
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 9.0e-88 327.4 234 69.2
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 3.4e-87 325.5 235 69.4
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 5.8e-87 324.7 236 69.9
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 1.7e-86 323.2 186 88.2
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 6.4e-86 321.2 235 68.1
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.4e-85 320.1 235 67.7
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 1.4e-85 320.1 235 67.7
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 2.4e-85 319.3 235 68.1
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 4.2e-85 318.5 235 67.2
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 5.5e-85 318.2 252 65.5
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 1.6e-84 316.6 235 67.7
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 2.7e-84 315.8 235 65.1
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 4.6e-84 315.1 235 66.8
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 7.9e-84 314.3 235 66.8
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 1.8e-83 313.2 235 65.5
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 1.8e-83 313.2 235 64.3
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 2.3e-83 312.8 235 66.4
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 3.9e-83 312.0 235 67.2
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 6.7e-83 311.2 235 66.0
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 1.1e-82 310.5 235 64.7
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 1.1e-82 310.5 235 67.2
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 1.9e-82 309.7 235 69.8
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 3.3e-82 308.9 235 64.7
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 5.6e-82 308.1 235 66.4
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 9.6e-82 307.4 233 66.1
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 1.3e-81 307.0 235 64.3
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 1.6e-81 306.6 235 63.8
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.6e-81 306.6 257 63.8
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 3.7e-81 305.4 217 70.0
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 4.8e-81 305.1 235 65.1
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 4.8e-81 305.1 235 66.4
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 6.2e-81 304.7 235 65.1
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 8.1e-81 304.3 233 65.7
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 2.4e-80 302.8 235 63.0
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 6.9e-80 301.2 235 65.5
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 1.2e-79 300.4 235 62.6
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 1.5e-79 300.1 235 64.7
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 4.5e-79 298.5 220 69.5
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 4.5e-79 298.5 235 62.1
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 4.5e-79 298.5 235 63.8
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 5.8e-79 298.1 235 62.1
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 7.6e-79 297.7 235 63.0
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 7.6e-79 297.7 235 63.8
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 1.0e-78 297.4 235 63.4
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 1.3e-78 297.0 232 65.1
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 1.7e-78 296.6 235 63.0
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 3.8e-78 295.4 235 64.3
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 6.5e-78 294.7 235 62.6
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 8.4e-78 294.3 233 62.2
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 7.1e-77 291.2 235 62.6
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 7.1e-77 291.2 235 62.6
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 9.3e-77 290.8 235 61.7
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 1.0e-75 287.3 235 65.1
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 3.0e-75 285.8 235 61.3
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 3.0e-75 285.8 235 61.3
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 5.1e-75 285.0 242 59.9
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 1.1e-74 283.9 288 52.8
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 2.5e-74 282.7 235 62.1
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 4.3e-74 282.0 235 61.3
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 7.4e-74 281.2 235 60.0
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 1.6e-73 280.0 235 58.7
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 3.7e-73 278.9 235 59.6
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 4.8e-73 278.5 235 59.6
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 9.0e-72 274.2 234 61.5
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 2.6e-71 272.7 233 58.8
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 2.6e-71 272.7 235 60.9
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 2.6e-71 272.7 235 59.1
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 7.2e-69 264.6 235 59.1
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 1.6e-68 263.5 235 59.1
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 2.1e-68 263.1 236 60.6
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 3.5e-68 262.3 230 57.0
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 1.3e-67 260.4 230 57.0
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 2.2e-65 253.1 235 55.7
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 2.8e-65 252.7 253 53.0
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 5.9e-63 245.0 216 58.3
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 1.4e-61 240.4 221 57.0
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 1.4e-61 240.4 221 57.0
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 1.4e-61 240.4 271 52.0
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 3.2e-61 239.2 190 63.2
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 3.6e-60 235.7 225 56.4
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 4.6e-60 235.3 211 56.4
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 6.1e-60 235.0 221 59.7
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 3.9e-59 232.3 221 59.3
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 5.1e-59 231.9 186 60.8
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 8.8e-59 231.1 222 55.0
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 2.6e-55 219.5 244 50.4
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 2.9e-54 216.1 289 47.4
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 2.3e-51 206.5 172 61.6
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 3.0e-51 206.1 197 53.8
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 1.5e-50 203.8 143 67.1
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 3.1e-48 196.1 232 49.1
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 1.2e-47 194.1 143 65.0
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 2.9e-46 189.5 129 69.8
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 1.9e-45 186.8 175 57.1
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 1.2e-44 184.1 235 46.4
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 1.4e-40 170.6 135 62.2
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 3.1e-40 169.5 138 60.9
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 3.8e-38 162.5 184 48.4
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 1.6e-36 157.1 137 59.9
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 2.2e-33 146.7 143 55.2
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 6.3e-33 145.2 132 58.3
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 6.8e-27 125.2 106 61.3
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 1.5e-26 124.0 226 32.3
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 2.9e-22 109.8 82 62.2
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 4.3e-21 105.9 233 29.2
arahy.Tifrunner.gnm1.ann1.D8HQTE Arachis hypogaea HOM05D006697 ORTHO05D008161 9.5e-13 78.2 61 59.0
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 8.3e-09 65.1 84 44.0
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 2.4e-08 63.5 43 67.4
FAN20G1527 Fragaria x ananassa HOM05D006697 ORTHO05D205377 1.0e-06 58.2 90 40.0
FAN20G1409 Fragaria x ananassa HOM05D006697 ORTHO05D206840 3.0e-06 56.6 62 51.6


User provided reference genes

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