Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1561.2 897 100.0
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1356.7 904 85.3
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1348.6 903 84.8
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1343.2 890 85.6
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1337.4 896 84.8
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1333.9 896 85.0
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1332.8 903 84.2
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1328.5 898 84.9
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1285.0 898 77.8
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1268.1 834 80.6
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1259.6 882 73.7
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1257.7 875 80.7
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1252.3 895 77.3
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1245.7 896 73.3
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1243.4 897 75.6
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1243.0 830 80.1
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1241.9 880 77.8
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1241.5 840 77.5
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1241.5 895 77.8
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1241.1 842 77.1
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1240.7 863 77.3
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1239.9 831 79.8
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1239.6 832 79.7
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1237.6 895 74.3
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1237.2 832 79.6
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1236.5 837 75.7
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1235.3 892 74.3
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1234.6 880 76.1
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1234.2 834 78.9
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1234.2 832 79.4
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1233.4 863 77.2
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1233.0 839 75.8
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1230.7 898 74.3
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1229.5 865 80.8
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1229.2 902 73.4
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1227.6 874 76.5
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1226.8 870 76.9
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1226.5 874 76.4
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1226.1 834 78.1
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1224.5 867 78.5
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1223.4 893 72.0
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1221.5 883 76.2
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1221.5 898 73.5
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1218.4 837 75.4
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1216.8 881 75.7
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1216.4 875 75.2
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1214.9 831 80.1
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1213.7 863 75.1
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1212.6 830 79.2
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1208.0 838 75.4
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1207.2 865 74.0
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1206.8 907 70.3
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1204.9 832 77.6
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1204.1 833 75.8
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1203.3 883 72.7
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1203.0 881 72.8
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1203.0 879 72.5
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1203.0 903 73.0
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1202.2 832 77.4
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1196.8 832 75.5
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1196.8 901 72.1
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1195.6 908 70.6
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1194.1 857 73.7
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1184.5 881 74.6
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1183.7 867 72.3
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1172.9 869 71.3
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1165.2 877 72.9
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1161.7 886 70.3
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1147.1 835 73.9
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1124.4 910 69.6
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1124.4 867 69.4
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1124.4 833 74.1
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1118.2 873 70.2
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1115.9 833 75.5
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1114.8 862 66.9
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1109.7 867 69.8
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1109.0 838 67.7
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1091.6 834 66.8
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 0.0e+00 1085.5 838 71.2
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1085.1 874 67.6
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1078.9 834 69.5
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 6.1e-312 1074.3 890 68.0
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 1.0e-304 1050.0 818 69.7
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 1.0e-304 1050.0 818 69.7
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 3.1e-266 922.2 829 63.1
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 1.0e-261 907.1 636 77.2
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 1.3e-243 847.0 831 55.1
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 3.2e-242 842.4 579 75.5
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 3.2e-242 842.4 619 78.0
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 7.6e-228 794.7 472 82.4
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 3.5e-225 785.8 832 51.9
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 1.7e-219 766.9 494 76.9
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 5.3e-213 745.3 832 49.2
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 5.8e-212 741.9 546 72.2
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 7.9e-209 731.5 519 80.0
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 1.2e-188 664.5 586 67.9
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 2.6e-188 663.3 841 46.6
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.8e-184 650.6 493 71.8
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 7.2e-178 628.6 844 42.5
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.4e-165 587.8 469 72.3
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 1.6e-148 531.2 432 67.8
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 4.7e-145 519.6 684 43.0
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 2.3e-128 464.2 365 72.6
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 4.5e-95 353.6 210 83.8
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 8.4e-94 349.4 311 70.4
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 6.3e-89 333.2 187 85.6
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 8.2e-89 332.8 283 64.0
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 1.1e-85 322.4 226 70.8
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 2.6e-79 301.2 247 66.4
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 1.7e-78 298.5 190 77.4
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 6.5e-78 296.6 256 63.7
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 2.3e-75 288.1 225 67.1
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.3e-75 288.1 225 66.2
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.5e-74 285.4 191 75.4
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 3.0e-51 208.0 159 69.8
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 8.3e-49 199.9 111 87.4
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 1.6e-47 195.7 120 80.8
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 3.8e-46 191.0 144 66.0
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 3.2e-45 188.0 165 60.0
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 5.5e-45 187.2 113 78.8
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 9.5e-37 159.8 99 79.8
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 6.1e-36 157.1 210 45.7
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 1.4e-35 156.0 87 86.2
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 5.2e-35 154.1 91 83.5
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 5.6e-21 107.5 168 41.7
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 9.5e-21 106.7 69 76.8
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.8e-20 105.1 82 69.5
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.3e-17 96.3 88 55.7
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.6e-15 89.4 62 72.6
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 7.8e-15 87.0 53 81.1
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.3e-14 86.3 60 76.7
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 1.3e-14 86.3 51 80.4
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 9.5e-13 80.1 54 72.2
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 3.6e-12 78.2 71 66.2
FvH4_6g01352 Fragaria vesca HOM05D002281 ORTHO05D006774 2.3e-11 75.5 93 72.0
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 2.9e-09 68.6 49 73.5
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 4.9e-09 67.8 200 27.0
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 1.4e-08 66.2 42 76.2
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 7.1e-08 63.9 231 25.1
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 1.6e-07 62.8 202 25.2
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 3.9e-06 58.2 38 68.4


User provided reference genes

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