Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1203400 Malus domestica HOM05D005016 ORTHO05D005740 6.0e-163 577.4 281 100.0
MD12G1217300 Malus domestica HOM05D005016 ORTHO05D005740 7.2e-108 394.4 279 75.3
Prupe.6G323600 Prunus persica HOM05D005016 ORTHO05D005740 7.4e-97 357.8 298 65.4
CiPaw.07G019300 Carya illinoinensis HOM05D005016 ORTHO05D005740 1.8e-87 326.6 288 60.8
QL03p007603 Quercus lobata HOM05D005016 ORTHO05D005740 2.4e-87 326.2 280 61.4
CiPaw.08G163500 Carya illinoinensis HOM05D005016 ORTHO05D005740 4.2e-84 315.5 279 60.6
QL03p007589 Quercus lobata HOM05D005016 ORTHO05D005740 4.2e-84 315.5 280 60.7
QL03p012886 Quercus lobata HOM05D005016 ORTHO05D005740 4.2e-84 315.5 280 60.7
CANSAT54G1439 Cannabis sativa HOM05D005016 ORTHO05D005740 9.4e-84 314.3 286 59.4
Sed0001919 Sechium edule HOM05D005016 ORTHO05D005740 3.6e-83 312.4 297 58.2
RcHm_v2.0_Chr3g0455221 Rosa chinensis HOM05D005016 ORTHO05D005740 1.2e-81 307.4 283 59.4
Lj5g0018596 Lotus japonicus HOM05D005016 ORTHO05D005740 2.2e-80 303.1 281 57.7
Ciclev10001764m.g Citrus clementina HOM05D005016 ORTHO05D005740 3.7e-80 302.4 294 55.8
Glyma.06G164600 Glycine max HOM05D005016 ORTHO05D005740 5.3e-79 298.5 296 54.7
FvH4_6g06200 Fragaria vesca HOM05D005016 ORTHO05D005740 9.1e-79 297.7 291 57.0
Thecc.05G310100 Theobroma cacao HOM05D005016 ORTHO05D005740 1.6e-78 297.0 297 56.6
Eucgr.B01941 Eucalyptus grandis HOM05D005016 ORTHO05D005740 4.5e-78 295.4 282 56.4
Eucgr.B01853 Eucalyptus grandis HOM05D005016 ORTHO05D005740 7.7e-78 294.7 282 56.0
Haze_04172 Corylus avellana HOM05D005016 ORTHO05D005740 1.0e-77 294.3 272 59.6
CsaV3_6G042870 Cucumis sativus L. HOM05D005016 ORTHO05D005740 1.0e-77 294.3 297 56.2
TPR.G6101 Trifolium pratense HOM05D005016 ORTHO05D005740 1.0e-77 294.3 288 54.2
MELO3C007526.2 Cucumis melo HOM05D005016 ORTHO05D005740 3.8e-77 292.4 297 56.6
Gorai.007G298500 Gossypium raimondii HOM05D005016 ORTHO05D005740 3.8e-77 292.4 304 54.3
Gohir.D11G276400 Gossypium hirsutum HOM05D005016 ORTHO05D005740 1.5e-76 290.4 297 54.9
arahy.Tifrunner.gnm1.ann1.IT2BBU Arachis hypogaea HOM05D005016 ORTHO05D005740 2.5e-76 289.7 288 54.9
Medtr1g083060 Medicago truncatula HOM05D005016 ORTHO05D005740 2.5e-76 289.7 288 53.5
VMungo0720G0219 Vigna mungo HOM05D005016 ORTHO05D005740 2.5e-76 289.7 281 56.2
Gohir.A11G266100 Gossypium hirsutum HOM05D005016 ORTHO05D005740 1.2e-75 287.3 287 55.4
Potri.005G027700 Populus trichocarpa HOM05D005016 ORTHO05D005740 1.2e-75 287.3 296 53.7
Lalb_Chr02g0155631 Lupinus albus HOM05D005016 ORTHO05D005740 1.6e-75 287.0 288 54.2
Duzib177G0724 Durio zibethinus HOM05D005016 ORTHO05D005740 6.1e-75 285.0 291 54.3
TAR633G2288 Trochodendron aralioides HOM05D005016 ORTHO05D005740 6.8e-74 281.6 288 53.5
ClCG01G016560 Citrullus lanatus HOM05D005016 ORTHO05D005740 7.5e-73 278.1 351 48.7
PGR102G1806 Punica granatum HOM05D005016 ORTHO05D005740 7.5e-73 278.1 285 52.6
GSVIVG01031086001 Vitis vinifera HOM05D005016 ORTHO05D005740 7.5e-73 278.1 288 52.8
arahy.Tifrunner.gnm1.ann1.16ZACY Arachis hypogaea HOM05D005016 ORTHO05D005740 9.8e-73 277.7 281 55.2
Cpa.g.sc28.137 Carica papaya HOM05D005016 ORTHO05D005740 1.3e-72 277.3 261 57.9
FAN14G2756 Fragaria x ananassa HOM05D005016 ORTHO05D005740 9.1e-71 271.2 286 54.2
Nn4g24543 Nelumbo nucifera HOM05D005016 ORTHO05D005740 1.0e-69 267.7 288 51.4
MBI16_g23767_MAGBIO Magnolia biondii HOM05D005016 ORTHO05D005740 2.9e-69 266.2 338 46.7
Ca_10118_v3 Cicer arietinum L. HOM05D005016 ORTHO05D005740 5.0e-69 265.4 273 52.7
COL.COLO4_10485 Corchorus olitorius HOM05D005016 ORTHO05D005740 1.9e-68 263.5 280 51.8
THA.LOC104818706 Tarenaya hassleriana HOM05D005016 ORTHO05D005740 3.2e-68 262.7 286 52.1
BcaC03g17793 Brassica carinata HOM05D001965 ORTHO05D005740 5.2e-66 255.4 288 49.3
PSO170G0092 Papaver somniferum HOM05D005016 ORTHO05D005740 8.9e-66 254.6 287 51.2
PSO541G5136 Papaver somniferum HOM05D005016 ORTHO05D005740 1.2e-65 254.2 287 52.3
TWI18G0619 Tripterygium wilfordii HOM05D005016 ORTHO05D005740 5.7e-65 251.9 263 52.1
Actinidia03321 Actinidia chinensis HOM05D005016 ORTHO05D005740 9.8e-65 251.1 294 49.3
BraA02t08844Z Brassica rapa HOM05D001965 ORTHO05D005740 2.8e-64 249.6 297 48.1
C02p58190 Brassica napus HOM05D001965 ORTHO05D005740 4.9e-64 248.8 288 49.0
ATR0053G060 Amborella trichopoda HOM05D005016 ORTHO05D005740 6.3e-64 248.4 296 48.3
THA.LOC104821717 Tarenaya hassleriana HOM05D005016 ORTHO05D005740 6.3e-64 248.4 290 50.0
AL6G39410 Arabidopsis lyrata HOM05D005016 ORTHO05D005740 8.3e-64 248.1 277 50.5
BolC2t11886H Brassica oleracea HOM05D001965 ORTHO05D005740 8.3e-64 248.1 298 47.7
A02p38680 Brassica napus HOM05D001965 ORTHO05D005740 2.4e-63 246.5 297 47.8
Aa31LG11G9370 Aethionema arabicum HOM05D001965 ORTHO05D005740 4.1e-63 245.7 276 50.7
CARHR186150 Cardamine hirsuta HOM05D005016 ORTHO05D005740 7.0e-63 245.0 297 46.5
PSO675G5142 Papaver somniferum HOM05D005016 ORTHO05D005740 7.0e-63 245.0 292 49.7
FAN05G1032 Fragaria x ananassa HOM05D005016 ORTHO05D005740 1.6e-62 243.8 328 47.6
Hund07082 Selenicereus undatus HOM05D005016 ORTHO05D005740 2.7e-62 243.0 298 46.6
Thhalv10004554m.g Eutrema salsugineum HOM05D005016 ORTHO05D005740 4.5e-62 242.3 287 47.7
AT5G27620 Arabidopsis thaliana HOM05D005016 ORTHO05D005740 7.8e-62 241.5 277 49.5
A06p37400 Brassica napus HOM05D001965 ORTHO05D002112 7.8e-62 241.5 299 47.5
BraA06t26664Z Brassica rapa HOM05D001965 ORTHO05D002112 7.8e-62 241.5 299 47.5
Manes.09G168600 Manihot esculenta HOM05D005016 ORTHO05D005740 1.0e-61 241.1 195 63.6
Dinv09444 Davidia involucrata HOM05D005016 ORTHO05D005740 8.6e-61 238.0 292 47.9
Sp2g20780 Schrenkiella parvula HOM05D005016 ORTHO05D005740 8.6e-61 238.0 277 48.4
Phvul.007G179300 Phaseolus vulgaris HOM05D005016 ORTHO05D005740 2.5e-60 236.5 263 52.1
Carub.0006s2497 Capsella rubella HOM05D005016 ORTHO05D005740 7.3e-60 235.0 277 47.7
A09p05360 Brassica napus HOM05D005016 ORTHO05D005740 2.8e-59 233.0 278 47.1
AUR62000803 Chenopodium quinoa HOM05D005016 ORTHO05D005740 3.6e-59 232.6 286 46.2
C07p40950 Brassica napus HOM05D001965 ORTHO05D002112 1.0e-58 231.1 285 47.0
DCAR_002182 Daucus carota HOM05D005016 ORTHO05D005740 1.0e-58 231.1 286 48.3
Sopen04g029030 Solanum pennellii HOM05D005016 ORTHO05D005740 1.4e-58 230.7 284 45.8
CSS0032285 Camellia sinensis var. sinensis HOM05D005016 ORTHO05D005740 1.8e-58 230.3 285 46.0
Zm00001eb056480 Zea mays HOM05D005016 ORTHO05D005740 1.8e-58 230.3 285 46.3
Cc02_g33260 Coffea canephora HOM05D005016 ORTHO05D005740 2.3e-58 229.9 288 45.8
FAN02G4356 Fragaria x ananassa HOM05D005016 ORTHO05D005740 3.0e-58 229.6 291 48.5
Os03g0737600 Oryza sativa ssp. japonica HOM05D005016 ORTHO05D005740 3.0e-58 229.6 286 46.5
C09p05840 Brassica napus HOM05D005016 ORTHO05D005740 6.8e-58 228.4 277 47.7
BolC9t53511H Brassica oleracea HOM05D005016 ORTHO05D005740 6.8e-58 228.4 277 47.7
AUR62005165 Chenopodium quinoa HOM05D005016 ORTHO05D005740 8.9e-58 228.0 286 45.8
HPP92_024286 Vanilla planifolia HOM05D005016 ORTHO05D005740 1.2e-57 227.6 289 45.3
PGSC0003DMG400009473 Solanum tuberosum HOM05D005016 ORTHO05D005740 1.5e-57 227.3 284 45.4
BraA09t36174Z Brassica rapa HOM05D005016 ORTHO05D005740 2.0e-57 226.9 277 46.6
MSTRG.6641 Avicennia marina HOM05D005016 ORTHO05D005740 2.6e-57 226.5 282 47.2
Solyc04g072880.3 Solanum lycopersicum HOM05D005016 ORTHO05D005740 2.6e-57 226.5 284 45.1
FAN09G3795 Fragaria x ananassa HOM05D005016 ORTHO05D005740 3.4e-57 226.1 263 50.2
Hma1.2p1_0268F.1_g107630 Hydrangea macrophylla HOM05D005016 ORTHO05D005740 5.7e-57 225.3 286 45.1
Sopen01g042860 Solanum pennellii HOM05D005016 ORTHO05D005740 1.3e-56 224.2 285 44.6
Solyc01g099310.4 Solanum lycopersicum HOM05D005016 ORTHO05D005740 2.2e-56 223.4 285 44.2
HPP92_024312 Vanilla planifolia HOM05D005016 ORTHO05D005740 3.7e-56 222.6 290 45.5
Ah.04g160380 Amaranthus hybridus HOM05D005016 ORTHO05D005740 3.2e-55 219.5 263 47.5
Nitab4.5_0002144g0050 Nicotiana tabacum HOM05D005016 ORTHO05D005740 4.1e-55 219.2 290 46.6
BolC7t44626H Brassica oleracea HOM05D005016 ORTHO05D005740 9.2e-55 218.0 300 44.3
Nitab4.5_0003830g0020 Nicotiana tabacum HOM05D005016 ORTHO05D005740 2.7e-54 216.5 290 46.2
Migut.M00036 Erythranthe guttata HOM05D005016 ORTHO05D005740 4.6e-54 215.7 289 44.6
Sabra05G0033200 Salix brachista HOM05D005016 ORTHO05D005740 6.0e-54 215.3 275 47.3
ECA236G0643 Erigeron canadensis HOM05D005016 ORTHO05D005740 1.1e-52 211.1 282 42.9
SGA_v2.0_scaffold73G24502 Striga asiatica HOM05D005016 ORTHO05D005740 1.1e-52 211.1 290 43.8
HanXRQChr12g0365431 Helianthus annuus HOM05D005016 ORTHO05D005740 3.3e-52 209.5 282 42.9
Sc09g0003080 Simmondsia chinensis HOM05D005016 ORTHO05D005740 3.6e-51 206.1 249 47.8
vmacro04578 Vaccinium macrocarpon HOM05D005016 ORTHO05D005740 1.1e-50 204.5 319 42.0
CSS0007157 Camellia sinensis var. sinensis HOM05D005016 ORTHO05D005740 1.4e-50 204.1 242 47.9
CAN.G1034.54 Capsicum annuum HOM05D005016 ORTHO05D005740 2.3e-50 203.4 285 44.9
SalBow7G0803 Salvia bowleyana HOM05D005016 ORTHO05D005740 6.8e-50 201.8 273 43.6
Lsat_1_v5_gn_8_67801 Lactuca sativa HOM05D005016 ORTHO05D005740 1.5e-49 200.7 273 42.1
unitig_899.g15345 Utricularia gibba HOM05D005016 ORTHO05D005740 1.5e-49 200.7 275 43.3
SMO367G1055 Selaginella moellendorffii HOM05D005016 ORTHO05D005740 6.4e-48 195.3 278 40.6
Ca_21251_v3 Cicer arietinum L. HOM05D005016 ORTHO05D005740 1.1e-47 194.5 283 42.0
Rhsim05G0222800 Rhododendron simsii HOM05D005016 ORTHO05D005740 1.1e-42 177.9 276 41.7
Oeu012104.3 Olea europaea HOM05D005016 ORTHO05D005740 1.8e-42 177.2 333 36.9
Psat0s2745g0240 Pisum sativum HOM05D005016 ORTHO05D005740 5.2e-42 175.6 167 53.9
Aqoxy5G00653 Aquilegia oxysepala HOM05D005016 ORTHO05D005628 8.9e-42 174.9 195 52.3
BcaB04g19682 Brassica carinata HOM05D005016 ORTHO05D005740 8.9e-42 174.9 175 54.3
CDE10G0931 Ceratophyllum demersum HOM05D005016 ORTHO05D005740 7.5e-41 171.8 197 50.3
Mapoly0138s0006 Marchantia polymorpha HOM05D005016 ORTHO05D005740 3.7e-40 169.5 301 35.9
Peaxi162Scf00235g00215 Petunia axillaris HOM05D005016 ORTHO05D005740 1.4e-39 167.5 251 43.8
Pp3c5_10610 Physcomitrium patens HOM05D005016 ORTHO05D005740 4.6e-38 162.5 298 36.6
Prupe.2G191000 Prunus persica HOM05D005016 ORTHO05D005740 6.0e-38 162.2 121 70.2
EL10Ac4g09400 Beta vulgaris HOM05D005016 ORTHO05D005740 2.3e-37 160.2 273 38.5
Gohir.D10G161900 Gossypium hirsutum HOM05D005016 ORTHO05D005740 8.6e-37 158.3 143 60.1
HanXRQChr12g0385591 Helianthus annuus HOM05D005016 ORTHO05D005740 1.9e-36 157.1 250 39.6
PGSC0003DMG400024698 Solanum tuberosum HOM05D005016 ORTHO05D005740 3.3e-36 156.4 303 36.3
Gohir.A01G127800 Gossypium hirsutum HOM05D005016 ORTHO05D005740 2.1e-35 153.7 154 55.8
Gohir.A13G117600 Gossypium hirsutum HOM05D005016 ORTHO05D005740 2.1e-35 153.7 154 55.8
Gohir.D10G225900 Gossypium hirsutum HOM05D005016 ORTHO05D005740 2.1e-35 153.7 154 55.8
Gohir.A04G121400 Gossypium hirsutum HOM05D005016 ORTHO05D005740 2.8e-35 153.3 153 56.2
Gohir.A07G065300 Gossypium hirsutum HOM05D005016 ORTHO05D005740 2.8e-35 153.3 154 56.5
Gohir.A13G041900 Gossypium hirsutum HOM05D005016 ORTHO05D005740 2.8e-35 153.3 154 55.8
Gohir.D01G124500 Gossypium hirsutum HOM05D005016 ORTHO05D005740 2.8e-35 153.3 153 56.2
Gohir.A10G082600 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.6e-35 152.9 154 55.2
Glyma.17G201300 Glycine max HOM05D005016 ORTHO05D005740 6.2e-35 152.1 155 54.8
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 5.2e-34 149.1 117 64.1
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 6.8e-34 148.7 117 64.1
Mapoly0001s0195 Marchantia polymorpha HOM05D005016 ORTHO05D005740 9.2e-31 138.3 262 34.7
CBR_g29551 Chara braunii HOM05D005016 ORTHO05D005740 6.6e-29 132.1 286 32.2
Pp3c27_2950 Physcomitrium patens HOM05D005016 ORTHO05D005740 6.9e-26 122.1 200 38.5
AagrBONN_evm.TU.Sc2ySwM_344.774 Anthoceros agrestis HOM05D005016 ORTHO05D005740 8.4e-24 115.2 199 34.7
Eucgr.H02201 Eucalyptus grandis HOM05D005016 ORTHO05D005740 1.4e-18 97.8 68 63.2
MCO06G045 Micromonas commoda HOM05D005016 ORTHO05D005740 2.4e-15 87.0 166 31.9
CDE10G0550 Ceratophyllum demersum HOM05D005016 ORTHO05D005740 5.4e-15 85.9 81 51.9
CDE10G0345 Ceratophyllum demersum HOM05D005016 ORTHO05D005740 2.1e-14 84.0 197 32.0
Gohir.D09G110800 Gossypium hirsutum HOM05D005016 ORTHO05D005740 3.5e-14 83.2 59 67.8
RcHm_v2.0_Chr7g0227161 Rosa chinensis HOM05D005016 ORTHO05D005740 1.3e-13 81.3 92 53.3
BcaNung04542 Brassica carinata HOM05D001965 ORTHO05D002112 1.9e-12 77.4 97 44.3
Psat0s2745g0160 Pisum sativum HOM05D005016 ORTHO05D005740 1.9e-12 77.4 61 60.7
SHI00439 Sapria himalayana HOM05D005016 ORTHO05D005740 1.1e-10 71.6 87 49.4
PRCOL_00002163 Prasinoderma coloniale HOM05D005016 ORTHO05D005740 9.9e-09 65.1 163 31.3
SEGI_03068 Sequoiadendron giganteum HOM05D005016 ORTHO05D005740 3.8e-08 63.2 63 42.9
SHI00440 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-07 61.6 38 65.8
HanXRQChr16g0532711 Helianthus annuus HOM05D005016 ORTHO05D005740 1.4e-07 61.2 79 40.5
Nitab4.5_0002344g0160 Nicotiana tabacum HOM05D005016 ORTHO05D005740 7.9e-06 55.5 193 25.9


User provided reference genes

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