Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1165900 Malus domestica HOM05D003193 ORTHO05D005802 7.8e-167 590.5 324 100.0
MD12G1179600 Malus domestica HOM05D004863 ORTHO05D005802 5.4e-59 232.3 170 74.7
Prupe.2G254800 Prunus persica HOM05D004863 ORTHO05D005802 1.2e-37 161.4 163 57.7
MD04G1234000 Malus domestica HOM05D003193 ORTHO05D004924 3.5e-26 123.2 228 39.0
Prupe.6G353600 Prunus persica HOM05D003193 ORTHO05D004924 6.7e-25 119.0 243 35.4
FvH4_6g01410 Fragaria vesca HOM05D003193 ORTHO05D004924 8.7e-25 118.6 241 35.3
FAN14G4461 Fragaria x ananassa HOM05D003193 ORTHO05D004924 8.7e-25 118.6 241 35.3
FAN14G5315 Fragaria x ananassa HOM05D003193 ORTHO05D004924 8.7e-25 118.6 241 35.3
MD12G1252000 Malus domestica HOM05D003193 ORTHO05D004924 2.5e-24 117.1 247 36.4
Haze_17264 Corylus avellana HOM05D000087 ORTHO05D000793 7.4e-24 115.5 181 48.1
RcHm_v2.0_Chr3g0449041 Rosa chinensis HOM05D003193 ORTHO05D004924 7.4e-24 115.5 263 35.0
FAN02G3021 Fragaria x ananassa HOM05D003193 ORTHO05D004924 1.3e-23 114.8 241 34.9
Cfa001286 Carpinus fangiana HOM05D004863 ORTHO05D005802 6.9e-22 109.0 176 46.0
FAN05G0534 Fragaria x ananassa HOM05D003193 ORTHO05D004924 6.9e-22 109.0 241 34.4
FAN05G3617 Fragaria x ananassa HOM05D003193 ORTHO05D004924 6.9e-22 109.0 241 34.4
QL08p063631 Quercus lobata HOM05D004863 ORTHO05D005802 8.5e-20 102.1 178 43.8
Thecc.05G265800 Theobroma cacao HOM05D003193 ORTHO05D004924 7.2e-19 99.0 237 31.2
QL03p032698 Quercus lobata HOM05D003193 ORTHO05D004924 2.7e-18 97.1 248 31.0
CANSAT54G2238 Cannabis sativa HOM05D003193 ORTHO05D004924 3.6e-18 96.7 239 31.0
Atru.chr2.1127 Acer truncatum HOM05D003193 ORTHO05D004924 4.6e-18 96.3 246 30.9
Potri.019G024200 Populus trichocarpa HOM05D003193 ORTHO05D004924 6.1e-18 95.9 246 30.9
Gohir.D11G253200 Gossypium hirsutum HOM05D003193 ORTHO05D004924 7.9e-18 95.5 238 30.3
Gorai.007G272000 Gossypium raimondii HOM05D003193 ORTHO05D004924 7.9e-18 95.5 238 30.3
Manes.09G146200 Manihot esculenta HOM05D003193 ORTHO05D004924 7.9e-18 95.5 239 31.0
HanXRQChr05g0145131 Helianthus annuus HOM05D003193 ORTHO05D004924 1.4e-17 94.7 246 30.1
CiPaw.07G075300 Carya illinoinensis HOM05D003193 ORTHO05D004924 1.8e-17 94.4 237 31.6
TWI60G0900 Tripterygium wilfordii HOM05D003193 ORTHO05D004924 1.8e-17 94.4 229 30.6
CSS0037513 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 2.3e-17 94.0 226 31.9
Duzib177G0185 Durio zibethinus HOM05D003193 ORTHO05D004924 3.9e-17 93.2 236 30.1
Gohir.A11G243500 Gossypium hirsutum HOM05D003193 ORTHO05D004924 3.9e-17 93.2 238 29.4
Dinv06951 Davidia involucrata HOM05D003193 ORTHO05D004924 8.8e-17 92.0 246 30.5
Lalb_Chr04g0261971 Lupinus albus HOM05D003193 ORTHO05D004924 1.1e-16 91.7 250 29.2
CsaV3_2G010070 Cucumis sativus L. HOM05D003193 ORTHO05D004924 1.5e-16 91.3 227 30.8
Manes.10G009400 Manihot esculenta HOM05D004863 ORTHO05D005802 1.5e-16 91.3 172 43.6
Potri.008G072300 Populus trichocarpa HOM05D004863 ORTHO05D005802 1.5e-16 91.3 177 41.2
Actinidia00665 Actinidia chinensis HOM05D004863 ORTHO05D005802 2.0e-16 90.9 177 42.9
CiPaw.01G301000 Carya illinoinensis HOM05D004863 ORTHO05D005802 2.0e-16 90.9 180 40.0
Ciclev10031002m.g Citrus clementina HOM05D004863 ORTHO05D005802 2.0e-16 90.9 192 40.1
Dinv21763 Davidia involucrata HOM05D004863 ORTHO05D005802 2.0e-16 90.9 211 37.9
MELO3C008660.2 Cucumis melo HOM05D003193 ORTHO05D004924 2.5e-16 90.5 227 30.8
ECA232G1705 Erigeron canadensis HOM05D003193 ORTHO05D004924 5.7e-16 89.4 245 29.0
MSTRG.8933 Avicennia marina HOM05D004863 ORTHO05D005802 2.8e-15 87.0 200 36.0
PGR142G2246 Punica granatum HOM05D004863 ORTHO05D005802 8.2e-15 85.5 178 40.4
MBI07_g08903_MAGBIO Magnolia biondii HOM05D003193 ORTHO05D004924 1.8e-14 84.3 205 34.1
SGA_v2.0_scaffold60G20969 Striga asiatica HOM05D004863 ORTHO05D005802 2.4e-14 84.0 182 39.6
THA.LOC104821587 Tarenaya hassleriana HOM05D003193 ORTHO05D004924 2.4e-14 84.0 235 29.8
Migut.F00644 Erythranthe guttata HOM05D004863 ORTHO05D005802 4.1e-14 83.2 186 38.2
SalBow3G1147 Salvia bowleyana HOM05D004863 ORTHO05D005802 4.1e-14 83.2 181 36.5
Rhsim05G0170000 Rhododendron simsii HOM05D003193 ORTHO05D004924 5.3e-14 82.8 255 29.4
Sabra19G0034100 Salix brachista HOM05D003193 ORTHO05D004924 5.3e-14 82.8 234 29.5
Cpa.g.sc51.22 Carica papaya HOM05D003193 ORTHO05D004924 9.1e-14 82.0 239 29.3
ClCG11G010250 Citrullus lanatus HOM05D003193 ORTHO05D004924 1.5e-13 81.3 209 30.6
COL.COLO4_37867 Corchorus olitorius HOM05D003193 ORTHO05D004924 1.5e-13 81.3 190 31.6
Actinidia00966 Actinidia chinensis HOM05D004863 ORTHO05D005802 2.0e-13 80.9 134 45.5
Hma1.2p1_3100F.1_g332690 Hydrangea macrophylla HOM05D004863 ORTHO05D005802 2.0e-13 80.9 170 40.6
Peaxi162Scf00071g02610 Petunia axillaris HOM05D003193 ORTHO05D004924 2.0e-13 80.9 237 27.4
Sed0015322 Sechium edule HOM05D003193 ORTHO05D004924 2.0e-13 80.9 238 28.6
Aa31LG2G2030 Aethionema arabicum HOM05D003193 ORTHO05D004924 2.6e-13 80.5 226 28.3
Lsat_1_v5_gn_9_45981 Lactuca sativa HOM05D003193 ORTHO05D004924 2.6e-13 80.5 252 28.6
Nitab4.5_0002063g0040 Nicotiana tabacum HOM05D003193 ORTHO05D004924 3.4e-13 80.1 187 29.9
Eucgr.H04206 Eucalyptus grandis HOM05D003193 ORTHO05D004924 4.5e-13 79.7 246 27.2
FAN09G1546 Fragaria x ananassa HOM05D003193 ORTHO05D004924 5.9e-13 79.3 216 31.9
Nitab4.5_0001498g0050 Nicotiana tabacum HOM05D003193 ORTHO05D004924 5.9e-13 79.3 254 27.2
SpUn0003_0310 Schrenkiella parvula HOM05D003193 ORTHO05D004924 5.9e-13 79.3 235 28.5
Ciclev10018428m.g Citrus clementina HOM05D003193 ORTHO05D004924 7.7e-13 79.0 262 27.5
Lj1g0024446 Lotus japonicus HOM05D003193 ORTHO05D004924 7.7e-13 79.0 256 27.0
CAN.G1432.18 Capsicum annuum HOM05D004863 ORTHO05D005802 1.0e-12 78.6 176 36.9
AL2G19160 Arabidopsis lyrata HOM05D003193 ORTHO05D004924 1.7e-12 77.8 226 27.4
Aqoxy5G00090 Aquilegia oxysepala HOM05D003193 ORTHO05D004924 2.2e-12 77.4 233 28.8
A02p23930 Brassica napus HOM05D003193 ORTHO05D004924 2.2e-12 77.4 226 27.4
BraA02t07385Z Brassica rapa HOM05D003193 ORTHO05D004924 2.2e-12 77.4 226 27.4
Thhalv10022486m.g Eutrema salsugineum HOM05D003193 ORTHO05D004924 2.2e-12 77.4 226 27.9
TAR365G0326 Trochodendron aralioides HOM05D003193 ORTHO05D004924 2.2e-12 77.4 251 27.9
AT1G64790 Arabidopsis thaliana HOM05D003193 ORTHO05D004924 2.9e-12 77.0 226 27.4
BcaC03g16020 Brassica carinata HOM05D003193 ORTHO05D004924 2.9e-12 77.0 226 27.4
BolC2t09791H Brassica oleracea HOM05D003193 ORTHO05D004924 2.9e-12 77.0 226 27.4
Sopen04g021290 Solanum pennellii HOM05D003193 ORTHO05D004924 2.9e-12 77.0 248 26.2
CARHR056150 Cardamine hirsuta HOM05D003193 ORTHO05D004924 3.8e-12 76.6 226 27.9
Sed0002460 Sechium edule HOM05D004863 ORTHO05D005802 3.8e-12 76.6 178 41.6
Solyc04g050520.3 Solanum lycopersicum HOM05D003193 ORTHO05D004924 3.8e-12 76.6 248 26.2
Nitab4.5_0012306g0020 Nicotiana tabacum HOM05D004863 ORTHO05D005802 5.0e-12 76.3 177 36.7
Hund28419 Selenicereus undatus HOM05D003193 ORTHO05D004924 5.0e-12 76.3 217 28.6
Hund28421 Selenicereus undatus HOM05D003193 ORTHO05D004924 5.0e-12 76.3 217 28.6
TWI09G1305 Tripterygium wilfordii HOM05D004863 ORTHO05D005802 5.0e-12 76.3 165 40.6
GSVIVG01026340001 Vitis vinifera HOM05D003193 ORTHO05D004924 5.0e-12 76.3 258 27.5
BcaB05g23590 Brassica carinata HOM05D003193 ORTHO05D004924 6.5e-12 75.9 226 27.0
Cc09_g03080 Coffea canephora HOM05D003193 ORTHO05D004924 1.9e-11 74.3 242 27.3
MD08G1086100 Malus domestica HOM05D003193 ORTHO05D004924 2.5e-11 73.9 66 56.1
Nitab4.5_0001163g0110 Nicotiana tabacum HOM05D004863 ORTHO05D005802 2.5e-11 73.9 177 36.7
TAR636G0188 Trochodendron aralioides HOM05D003193 ORTHO05D004924 3.2e-11 73.6 251 27.1
Nn1g03055 Nelumbo nucifera HOM05D003193 ORTHO05D004924 5.5e-11 72.8 251 26.3
Carub.0012s0016 Capsella rubella HOM05D003193 ORTHO05D004924 9.4e-11 72.0 226 26.5
CAN.G131.15 Capsicum annuum HOM05D003193 ORTHO05D004924 1.2e-10 71.6 247 26.3
SGA_v2.0_scaffold62G21472 Striga asiatica HOM05D003193 ORTHO05D004924 1.6e-10 71.2 245 24.9
Eucgr.G03083 Eucalyptus grandis HOM05D004863 ORTHO05D005802 2.7e-10 70.5 171 38.6
TPR.G4710 Trifolium pratense HOM05D003193 ORTHO05D004924 6.1e-10 69.3 250 25.2
PSO764G0333 Papaver somniferum HOM05D003193 ORTHO05D004924 7.9e-10 68.9 250 26.4
CSS0034895 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D016156 1.0e-09 68.6 53 52.8
Phvul.006G107000 Phaseolus vulgaris HOM05D003193 ORTHO05D004924 1.0e-09 68.6 281 26.7
Cc02_g05730 Coffea canephora HOM05D004863 ORTHO05D005802 1.4e-09 68.2 168 38.7
PSO832G2952 Papaver somniferum HOM05D003193 ORTHO05D004924 1.8e-09 67.8 250 26.4
Psat0s4268g0040 Pisum sativum HOM05D003193 ORTHO05D004924 1.8e-09 67.8 250 24.8
PGR004G2196 Punica granatum HOM05D003193 ORTHO05D004924 1.8e-09 67.8 254 25.2
Sc09g0001810 Simmondsia chinensis HOM05D003193 ORTHO05D004924 2.3e-09 67.4 261 24.1
CANSAT32G0002 Cannabis sativa HOM05D004863 ORTHO05D005802 3.0e-09 67.0 185 34.1
CANSAT56G0816 Cannabis sativa HOM05D004863 ORTHO05D005802 3.0e-09 67.0 185 34.1
VMungo0540G1922 Vigna mungo HOM05D003193 ORTHO05D004924 3.0e-09 67.0 251 26.7
Ca_09471_v3 Cicer arietinum L. HOM05D003193 ORTHO05D004924 3.9e-09 66.6 250 26.4
arahy.Tifrunner.gnm1.ann1.9XF1RW Arachis hypogaea HOM05D003193 ORTHO05D004924 6.7e-09 65.9 236 25.0
Solyc06g074870.3 Solanum lycopersicum HOM05D004863 ORTHO05D005802 8.8e-09 65.5 178 35.4
Haze_04476 Corylus avellana HOM05D003193 ORTHO05D004924 1.1e-08 65.1 58 46.6
Medtr7g116425 Medicago truncatula HOM05D003193 ORTHO05D004924 1.1e-08 65.1 250 24.4
Sopen06g031290 Solanum pennellii HOM05D004863 ORTHO05D005802 1.1e-08 65.1 177 34.5
arahy.Tifrunner.gnm1.ann1.ZPSV32 Arachis hypogaea HOM05D003193 ORTHO05D004924 1.5e-08 64.7 267 24.3
Peaxi162Scf00114g01014 Petunia axillaris HOM05D004863 ORTHO05D005802 1.5e-08 64.7 180 37.8
Actinidia03822 Actinidia chinensis HOM05D003193 ORTHO05D004924 2.0e-08 64.3 240 25.4
Migut.F02049 Erythranthe guttata HOM05D003193 ORTHO05D004924 2.0e-08 64.3 251 23.5
Glyma.03G252300 Glycine max HOM05D003193 ORTHO05D004924 2.6e-08 63.9 250 26.0
C02p37720 Brassica napus HOM05D003193 ORTHO05D004924 4.4e-08 63.2 251 24.7
DCAR_029994 Daucus carota HOM05D003193 ORTHO05D004924 9.7e-08 62.0 53 47.2
FvH4_5g35270 Fragaria vesca HOM05D004863 ORTHO05D005802 9.7e-08 62.0 171 33.9
Duzib128G0112 Durio zibethinus HOM05D004863 ORTHO05D005802 1.7e-07 61.2 176 36.4
FAN18G0869 Fragaria x ananassa HOM05D004863 ORTHO05D005802 1.7e-07 61.2 177 33.9
HPP92_001295 Vanilla planifolia HOM05D003193 ORTHO05D004924 1.7e-07 61.2 250 26.0
Rhsim09G0179600 Rhododendron simsii HOM05D004863 ORTHO05D005802 2.8e-07 60.5 233 28.3
FAN04G1688 Fragaria x ananassa HOM05D004863 ORTHO05D005802 3.7e-07 60.1 168 33.9
Glyma.19G249900 Glycine max HOM05D003193 ORTHO05D004924 4.8e-07 59.7 250 24.8
CSS0008249 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 6.3e-07 59.3 131 38.2
CsaV3_5G010370 Cucumis sativus L. HOM05D004863 ORTHO05D005802 6.3e-07 59.3 176 34.1
RcHm_v2.0_Chr7g0236141 Rosa chinensis HOM05D004863 ORTHO05D005802 6.3e-07 59.3 151 34.4
MELO3C018373.2 Cucumis melo HOM05D004863 ORTHO05D005802 8.2e-07 58.9 181 35.4
RcHm_v2.0_Chr0c11g0499371 Rosa chinensis HOM05D004863 ORTHO05D005802 8.2e-07 58.9 151 34.4
AUR62006993 Chenopodium quinoa HOM05D003193 ORTHO05D004924 1.1e-06 58.5 217 27.6
AUR62000638 Chenopodium quinoa HOM05D003193 ORTHO05D004924 1.8e-06 57.8 213 27.7
Actinidia06821 Actinidia chinensis HOM05D003193 ORTHO05D026302 4.1e-06 56.6 66 54.5
vmacro19974 Vaccinium macrocarpon HOM05D003193 ORTHO05D004924 5.3e-06 56.2 59 55.9
CSS0049037 Camellia sinensis var. sinensis HOM05D004863 ORTHO05D005802 7.0e-06 55.8 131 37.4
COL.COLO4_25779 Corchorus olitorius HOM05D007663 ORTHO05D009455 7.0e-06 55.8 172 33.1
CSS0043374 Camellia sinensis var. sinensis HOM05D003193 ORTHO05D004924 9.1e-06 55.5 71 52.1


User provided reference genes

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