Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 0.0e+00 1491.1 1052 100.0
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 9.3e-302 1040.4 1073 74.7
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 5.2e-260 901.7 1068 68.3
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 6.8e-252 874.8 1066 69.5
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.2e-251 874.0 1066 69.1
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.3e-250 870.5 1066 69.8
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 6.3e-250 868.2 1066 69.3
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 2.4e-233 813.1 652 77.3
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.2e-232 810.8 1066 68.0
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 3.6e-229 799.3 675 74.2
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.4e-225 786.6 678 73.5
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 4.6e-224 782.3 571 82.7
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 5.1e-223 778.9 643 75.7
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 2.2e-218 763.5 757 69.5
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 2.9e-218 763.1 758 69.4
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 8.3e-218 761.5 597 75.9
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 5.1e-215 752.3 727 70.3
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 2.5e-214 750.0 619 74.0
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 3.1e-212 743.0 658 72.6
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.2e-211 741.1 704 68.3
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 2.6e-211 740.0 709 68.3
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 4.4e-211 739.2 624 73.4
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 7.6e-211 738.4 624 73.2
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 9.9e-211 738.0 671 70.3
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 1.2e-208 731.1 670 70.0
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 4.6e-208 729.2 707 68.6
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 1.7e-207 727.2 623 72.7
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 2.3e-207 726.9 668 70.1
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 3.0e-207 726.5 591 76.8
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 3.9e-207 726.1 715 66.9
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 8.7e-207 724.9 662 71.6
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 7.3e-206 721.8 635 71.2
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 1.6e-205 720.7 666 70.3
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 2.1e-205 720.3 713 66.8
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 8.1e-205 718.4 633 74.1
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 9.9e-203 711.4 700 64.4
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 1.7e-202 710.7 703 68.0
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 1.4e-201 707.6 592 75.2
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 1.4e-201 707.6 735 66.0
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 1.4e-201 707.6 671 69.7
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 3.2e-201 706.4 597 74.7
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 9.3e-201 704.9 650 70.9
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 9.3e-201 704.9 636 73.4
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.7e-200 703.4 646 67.5
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 7.8e-200 701.8 624 70.4
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 1.0e-199 701.4 672 65.8
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.7e-199 700.7 650 70.6
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 3.1e-196 689.9 615 74.0
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 7.6e-195 685.3 717 66.2
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.9e-194 683.3 565 73.6
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 3.2e-193 679.9 663 63.8
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.5e-192 676.4 650 68.9
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 4.6e-192 676.0 704 61.8
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 1.0e-191 674.9 687 63.0
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 4.3e-190 669.5 678 64.2
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 5.6e-190 669.1 757 61.7
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 1.4e-188 664.5 684 61.3
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 1.4e-188 664.5 554 73.1
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.8e-188 664.1 678 65.6
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 4.0e-188 662.9 651 69.1
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 4.5e-187 659.4 684 65.2
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 7.6e-187 658.7 705 63.8
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 6.4e-186 655.6 677 65.4
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 3.2e-185 653.3 603 69.2
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 4.2e-185 652.9 677 62.5
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 1.2e-184 651.4 670 63.6
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.0e-183 648.3 717 62.8
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 3.0e-183 646.7 586 67.6
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 3.9e-183 646.4 690 64.9
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 2.5e-182 643.7 574 66.7
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 9.6e-182 641.7 611 67.6
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 9.6e-182 641.7 616 67.9
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 7.6e-179 632.1 675 64.4
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 8.4e-178 628.6 723 57.8
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 3.7e-173 613.2 689 59.1
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 6.9e-172 609.0 675 62.7
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 1.2e-171 608.2 653 61.6
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 4.5e-171 606.3 659 60.2
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 5.5e-169 599.4 631 61.8
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 1.2e-168 598.2 690 62.0
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 3.6e-168 596.7 690 61.9
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 4.6e-168 596.3 522 66.3
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 1.0e-167 595.1 611 60.7
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.8e-167 594.3 682 58.5
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 3.9e-167 593.2 622 61.4
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 5.1e-167 592.8 603 64.5
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 6.7e-167 592.4 522 66.1
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 2.8e-165 587.0 694 61.0
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.8e-164 584.3 648 60.2
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 2.4e-164 583.9 628 59.2
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 2.4e-164 583.9 628 59.2
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 6.9e-164 582.4 628 59.1
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 3.2e-161 573.5 630 61.6
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 4.2e-161 573.2 641 61.6
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 2.1e-160 570.9 594 66.3
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 7.9e-160 568.9 630 61.4
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 1.3e-157 561.6 668 56.9
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.7e-157 561.2 682 55.1
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 5.3e-156 556.2 666 57.2
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 7.7e-147 525.8 493 62.3
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 1.3e-146 525.0 479 71.6
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 2.0e-139 501.1 570 68.8
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 8.6e-114 416.0 607 49.6
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 6.2e-112 409.8 617 51.1
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 2.3e-111 407.9 300 70.3
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 2.2e-109 401.4 296 70.6
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 7.1e-108 396.4 501 54.3
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.2e-96 359.0 216 81.9
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 3.9e-90 337.4 544 46.3
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 1.1e-89 335.9 500 49.2
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.0e-74 284.6 497 45.7
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 3.0e-74 284.6 497 46.5
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.3e-72 279.3 364 60.4
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 1.3e-72 279.3 352 63.1
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 1.1e-71 276.2 177 78.5
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 4.0e-71 274.2 523 44.4
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 1.2e-67 262.7 541 43.4
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 2.1e-67 261.9 299 51.5
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 1.1e-65 256.1 276 62.0
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 1.9e-65 255.4 336 55.1
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 1.4e-60 239.2 179 72.6
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 3.3e-57 228.0 208 63.0
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.6e-27 129.4 143 59.4
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 2.6e-25 122.1 71 83.1
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 1.9e-20 105.9 86 60.5
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 2.5e-20 105.5 58 84.5
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 2.1e-19 102.4 90 62.2
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 2.8e-16 92.0 88 64.8
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 8.3e-16 90.5 425 26.1
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 2.4e-15 89.0 99 54.5
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 2.7e-14 85.5 263 34.6
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 3.5e-14 85.1 94 56.4
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 3.5e-14 85.1 299 38.1
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 6.6e-13 80.9 99 54.5
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 7.2e-12 77.4 444 29.3
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 2.1e-11 75.9 73 72.6
arahy.Tifrunner.gnm1.ann1.6LH71N Arachis hypogaea HOM05D005307 ORTHO05D006695 2.6e-09 68.9 140 53.6
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 1.3e-08 66.6 265 35.1
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 6.4e-08 64.3 49 71.4
Gohir.A01G041600 Gossypium hirsutum HOM05D001023 ORTHO05D000912 1.2e-06 60.1 103 36.9
Gorai.002G038400 Gossypium raimondii HOM05D001023 ORTHO05D000912 1.2e-06 60.1 103 36.9
Gohir.D05G333200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 2.7e-06 58.9 110 33.6
Aa31LG10G1640 Aethionema arabicum HOM05D001023 ORTHO05D000912 4.6e-06 58.2 106 36.8
Carub.0001s4292 Capsella rubella HOM05D001023 ORTHO05D000912 4.6e-06 58.2 102 37.3
CDE11G0185 Ceratophyllum demersum HOM05D001023 ORTHO05D000912 4.6e-06 58.2 84 39.3
Gohir.A11G291200 Gossypium hirsutum HOM05D001023 ORTHO05D000912 4.6e-06 58.2 103 35.9
Gohir.D11G301400 Gossypium hirsutum HOM05D001023 ORTHO05D000912 4.6e-06 58.2 103 35.9
Gorai.007G335300 Gossypium raimondii HOM05D001023 ORTHO05D000912 4.6e-06 58.2 103 35.9
Zm00001eb120320 Zea mays HOM05D001023 ORTHO05D000912 4.6e-06 58.2 98 36.7
arahy.Tifrunner.gnm1.ann1.6FDN0X Arachis hypogaea HOM05D001023 ORTHO05D000912 5.9e-06 57.8 98 36.7
arahy.Tifrunner.gnm1.ann1.8WSJ5E Arachis hypogaea HOM05D001023 ORTHO05D000912 5.9e-06 57.8 98 36.7
THA.LOC104810411 Tarenaya hassleriana HOM05D001023 ORTHO05D000912 5.9e-06 57.8 102 35.3
TWI81G0940 Tripterygium wilfordii HOM05D001023 ORTHO05D000912 5.9e-06 57.8 84 40.5
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 7.8e-06 57.4 102 51.0
BcaC04g23542 Brassica carinata HOM05D001023 ORTHO05D000912 7.8e-06 57.4 84 41.7
C09p07240 Brassica napus HOM05D001023 ORTHO05D000912 7.8e-06 57.4 84 41.7
Cfa019452 Carpinus fangiana HOM05D001023 ORTHO05D000912 7.8e-06 57.4 104 37.5
Gohir.A04G047000 Gossypium hirsutum HOM05D001023 ORTHO05D000912 7.8e-06 57.4 103 35.0
Gorai.009G358300 Gossypium raimondii HOM05D001023 ORTHO05D000912 7.8e-06 57.4 103 35.0
Lalb_Chr23g0271881 Lupinus albus HOM05D001023 ORTHO05D000912 7.8e-06 57.4 91 35.2


User provided reference genes

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