Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD04G1012500 Malus domestica HOM05D005979 ORTHO05D007848 9.5e-141 503.4 244 100.0
Prupe.7G257800 Prunus persica HOM05D005979 ORTHO05D007848 3.7e-129 464.9 244 91.8
RcHm_v2.0_Chr4g0414381 Rosa chinensis HOM05D005979 ORTHO05D007848 3.6e-124 448.4 244 86.9
FvH4_4g13730 Fragaria vesca HOM05D005979 ORTHO05D007848 1.4e-123 446.4 244 86.5
FAN12G2831 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.4e-123 446.4 244 86.5
RcHm_v2.0_Chr6g0280571 Rosa chinensis HOM05D005979 ORTHO05D007848 1.4e-123 446.4 244 86.9
FAN17G0168 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.2e-122 443.4 244 86.5
Ciclev10021922m.g Citrus clementina HOM05D005979 ORTHO05D007848 1.0e-118 430.3 244 82.4
Lj5g0020498 Lotus japonicus HOM05D005979 ORTHO05D007848 4.3e-117 424.9 244 82.4
Cfa016688 Carpinus fangiana HOM05D005979 ORTHO05D007848 9.6e-117 423.7 244 82.4
Eucgr.K01638 Eucalyptus grandis HOM05D005979 ORTHO05D007848 6.2e-116 421.0 245 80.4
Manes.09G007200 Manihot esculenta HOM05D005979 ORTHO05D007848 1.4e-115 419.9 244 82.4
CiPaw.09G046000 Carya illinoinensis HOM05D005979 ORTHO05D007848 2.4e-115 419.1 244 82.0
Cpa.g.sc5.208 Carica papaya HOM05D005979 ORTHO05D007848 3.1e-115 418.7 244 80.3
Lalb_Chr02g0156521 Lupinus albus HOM05D005979 ORTHO05D007848 1.2e-114 416.8 244 82.4
GSVIVG01033606001 Vitis vinifera HOM05D005979 ORTHO05D007848 5.8e-114 414.5 244 80.3
CANSAT64G2596 Cannabis sativa HOM05D005979 ORTHO05D007848 1.7e-113 412.9 244 78.3
Cc02_g19250 Coffea canephora HOM05D005979 ORTHO05D007848 3.8e-113 411.8 244 79.5
Sc18g0002150 Simmondsia chinensis HOM05D005979 ORTHO05D007848 1.4e-112 409.8 244 79.1
ClCG09G016040 Citrullus lanatus HOM05D005979 ORTHO05D007848 1.9e-112 409.5 246 78.5
Dinv35473 Davidia involucrata HOM05D005979 ORTHO05D007848 9.3e-112 407.1 244 78.7
QL07p008776 Quercus lobata HOM05D005979 ORTHO05D007848 1.6e-111 406.4 260 74.6
Psat6g123280 Pisum sativum HOM05D005979 ORTHO05D007848 2.1e-111 406.0 244 79.5
Ah.09g228190 Amaranthus hybridus HOM05D005979 ORTHO05D007848 2.7e-111 405.6 244 76.6
TPR.G19644 Trifolium pratense HOM05D005979 ORTHO05D007848 2.7e-111 405.6 244 78.7
TWI77G1019 Tripterygium wilfordii HOM05D005979 ORTHO05D007848 2.7e-111 405.6 242 77.7
Glyma.05G203800 Glycine max HOM05D005979 ORTHO05D007848 4.6e-111 404.8 244 78.7
Potri.006G041400 Populus trichocarpa HOM05D005979 ORTHO05D007848 4.6e-111 404.8 244 76.6
Gorai.013G116500 Gossypium raimondii HOM05D005979 ORTHO05D007848 1.0e-110 403.7 244 78.3
Medtr1g051215 Medicago truncatula HOM05D005979 ORTHO05D007848 1.0e-110 403.7 244 78.3
Sed0017937 Sechium edule HOM05D005979 ORTHO05D007848 3.0e-110 402.1 246 77.6
THA.LOC104823212 Tarenaya hassleriana HOM05D005979 ORTHO05D007848 3.0e-110 402.1 244 76.2
Thecc.05G139000 Theobroma cacao HOM05D005979 ORTHO05D007848 3.0e-110 402.1 244 77.9
Ca_23806_v3 Cicer arietinum L. HOM05D005979 ORTHO05D007848 3.9e-110 401.7 244 77.5
Medtr0004s0600 Medicago truncatula HOM05D005979 ORTHO05D007848 3.9e-110 401.7 244 77.9
CSS0035132 Camellia sinensis var. sinensis HOM05D005979 ORTHO05D007848 5.1e-110 401.4 244 77.0
Atru.chr1.1490 Acer truncatum HOM05D005979 ORTHO05D007848 6.6e-110 401.0 230 81.3
Gohir.A13G100300 Gossypium hirsutum HOM05D005979 ORTHO05D007848 6.6e-110 401.0 244 78.3
Nn7g36654 Nelumbo nucifera HOM05D005979 ORTHO05D007848 1.5e-109 399.8 244 76.6
Gohir.D13G103900 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.9e-109 399.4 244 77.9
CsaV3_4G027840 Cucumis sativus L. HOM05D005979 ORTHO05D007848 3.3e-109 398.7 246 76.8
Phvul.002G285700 Phaseolus vulgaris HOM05D005979 ORTHO05D007848 3.3e-109 398.7 245 77.6
Actinidia40001 Actinidia chinensis HOM05D005979 ORTHO05D007848 5.6e-109 397.9 244 77.0
HanXRQChr05g0144951 Helianthus annuus HOM05D005979 ORTHO05D007848 4.8e-108 394.8 244 75.4
AL3G21560 Arabidopsis lyrata HOM05D005979 ORTHO05D007848 6.2e-108 394.4 244 74.2
Aqoxy2G00350 Aquilegia oxysepala HOM05D005979 ORTHO05D007848 8.1e-108 394.0 244 74.6
Carub.0003s0939 Capsella rubella HOM05D005979 ORTHO05D007848 1.4e-107 393.3 244 73.4
Duzib093G1926 Durio zibethinus HOM05D005979 ORTHO05D007848 1.8e-107 392.9 244 77.5
MBI09_g07121_MAGBIO Magnolia biondii HOM05D005979 ORTHO05D007848 3.1e-107 392.1 244 75.8
Gohir.D04G132100 Gossypium hirsutum HOM05D005979 ORTHO05D007848 4.0e-107 391.7 244 76.2
BcaB04g21222 Brassica carinata HOM05D005979 ORTHO05D007848 6.9e-107 391.0 244 73.0
Thhalv10021412m.g Eutrema salsugineum HOM05D005979 ORTHO05D007848 6.9e-107 391.0 244 73.0
AT3G10220 Arabidopsis thaliana HOM05D005979 ORTHO05D007848 1.5e-106 389.8 244 73.8
CAN.G637.20 Capsicum annuum HOM05D005979 ORTHO05D007848 1.5e-106 389.8 243 75.3
Sp3g08500 Schrenkiella parvula HOM05D005979 ORTHO05D007848 2.0e-106 389.4 244 73.0
ECA232G1805 Erigeron canadensis HOM05D005979 ORTHO05D007848 3.4e-106 388.7 244 73.4
Solyc03g098170.3 Solanum lycopersicum HOM05D005979 ORTHO05D007848 4.5e-106 388.3 245 74.7
VMungo0251G0166 Vigna mungo HOM05D005979 ORTHO05D007848 4.5e-106 388.3 245 75.9
Aa31LG3G2790 Aethionema arabicum HOM05D005979 ORTHO05D007848 5.8e-106 387.9 244 72.1
Sopen03g028870 Solanum pennellii HOM05D005979 ORTHO05D007848 1.7e-105 386.3 245 74.3
Migut.B00389 Erythranthe guttata HOM05D005979 ORTHO05D007848 3.8e-105 385.2 244 74.6
BolC5t34447H Brassica oleracea HOM05D005979 ORTHO05D007848 4.9e-105 384.8 244 72.1
Prupe.1G158700 Prunus persica HOM05D005979 ORTHO05D007848 4.9e-105 384.8 205 90.7
CARHR084710 Cardamine hirsuta HOM05D005979 ORTHO05D007848 6.4e-105 384.4 244 72.5
AUR62033954 Chenopodium quinoa HOM05D005979 ORTHO05D007848 6.4e-105 384.4 245 73.9
BraA05t22680Z Brassica rapa HOM05D005979 ORTHO05D007848 8.4e-105 384.0 245 72.7
MELO3C019044.2 Cucumis melo HOM05D005979 ORTHO05D007848 1.9e-104 382.9 229 78.2
Lsat_1_v5_gn_0_460 Lactuca sativa HOM05D005979 ORTHO05D007848 2.4e-104 382.5 242 73.6
PGSC0003DMG400031053 Solanum tuberosum HOM05D005979 ORTHO05D007848 3.2e-104 382.1 245 73.5
vmacro19992 Vaccinium macrocarpon HOM05D005979 ORTHO05D007848 3.2e-104 382.1 275 67.3
COL.COLO4_00190 Corchorus olitorius HOM05D005979 ORTHO05D007848 5.4e-104 381.3 242 76.0
A05p38880 Brassica napus HOM05D005979 ORTHO05D007848 7.1e-104 380.9 245 72.2
C05p57920 Brassica napus HOM05D005979 ORTHO05D007848 1.2e-103 380.2 245 71.8
Hma1.2p1_0075F.1_g039230 Hydrangea macrophylla HOM05D005979 ORTHO05D007848 2.1e-103 379.4 229 78.2
TAR633G0311 Trochodendron aralioides HOM05D005979 ORTHO05D007848 2.1e-103 379.4 231 76.6
DCAR_001099 Daucus carota HOM05D005979 ORTHO05D007848 2.7e-103 379.0 238 70.6
BcaNung05525 Brassica carinata HOM05D005979 ORTHO05D007848 4.6e-103 378.3 245 71.0
Haze_19714 Corylus avellana HOM05D005979 ORTHO05D007848 4.6e-103 378.3 214 81.8
unitig_0.g99 Utricularia gibba HOM05D005979 ORTHO05D007848 6.0e-103 377.9 244 73.4
arahy.Tifrunner.gnm1.ann1.Y5SS6T Arachis hypogaea HOM05D005979 ORTHO05D007848 1.0e-102 377.1 244 76.2
SGA_v2.0_scaffold32G13036 Striga asiatica HOM05D005979 ORTHO05D007848 1.3e-102 376.7 276 67.4
CDE08G1123 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 3.9e-102 375.2 244 70.1
Oeu013750.3 Olea europaea HOM05D005979 ORTHO05D007848 5.1e-102 374.8 285 64.6
Rhsim05G0172800 Rhododendron simsii HOM05D005979 ORTHO05D007848 6.7e-102 374.4 296 62.5
CDE06G1795 Ceratophyllum demersum HOM05D005979 ORTHO05D007848 2.5e-101 372.5 244 69.7
ATR1134G092 Amborella trichopoda HOM05D005979 ORTHO05D007848 1.3e-100 370.2 244 71.7
Hund26899 Selenicereus undatus HOM05D005979 ORTHO05D007848 1.3e-100 370.2 254 70.1
HPP92_006880 Vanilla planifolia HOM05D005979 ORTHO05D007848 1.8e-99 366.3 244 68.9
HPP92_006862 Vanilla planifolia HOM05D005979 ORTHO05D007848 4.5e-98 361.7 244 68.4
EL10Ac8g19200 Beta vulgaris HOM05D005979 ORTHO05D007848 6.4e-97 357.8 241 71.0
PSO170G5780 Papaver somniferum HOM05D005979 ORTHO05D007848 9.3e-96 354.0 208 78.8
SalBow6G2287 Salvia bowleyana HOM05D005979 ORTHO05D007848 3.9e-94 348.6 328 56.1
Os04g0692100 Oryza sativa ssp. japonica HOM05D005979 ORTHO05D007848 2.4e-91 339.3 247 66.4
COL.COLO4_36506 Corchorus olitorius HOM05D005979 ORTHO05D007848 1.0e-89 334.0 205 78.0
Gorai.012G115900 Gossypium raimondii HOM05D005979 ORTHO05D007848 4.6e-87 325.1 206 74.8
Zm00001eb076570 Zea mays HOM05D005979 ORTHO05D007848 5.1e-86 321.6 281 56.2
Mapoly0016s0206 Marchantia polymorpha HOM05D005979 ORTHO05D007848 3.4e-82 308.9 250 56.0
AUR62029060 Chenopodium quinoa HOM05D005979 ORTHO05D007848 9.4e-80 300.8 244 60.7
Nitab4.5_0001180g0050 Nicotiana tabacum HOM05D005979 ORTHO05D007848 6.1e-79 298.1 301 54.2
Nitab4.5_0003715g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 3.0e-78 295.8 244 61.5
Lj2A41G64 Lonicera japonica HOM05D005979 ORTHO05D007848 1.5e-77 293.5 222 65.3
Pp3c13_18250 Physcomitrium patens HOM05D005979 ORTHO05D007848 4.8e-76 288.5 248 50.4
AagrBONN_evm.TU.Sc2ySwM_228.4763 Anthoceros agrestis HOM05D005979 ORTHO05D007848 8.8e-70 267.7 314 44.3
CBR_g30186 Chara braunii HOM05D005979 ORTHO05D007848 5.9e-66 255.0 261 51.3
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 2.5e-64 249.6 249 50.2
AUR62032907 Chenopodium quinoa HOM05D005979 ORTHO05D007848 7.7e-58 228.0 248 47.6
PRCOL_00000740 Prasinoderma coloniale HOM05D005979 ORTHO05D007848 2.7e-55 219.5 238 46.2
MCO14G471 Micromonas commoda HOM05D005979 ORTHO05D007848 1.5e-53 213.8 255 44.3
Peaxi162Scf00171g00620 Petunia axillaris HOM05D005979 ORTHO05D007848 1.3e-52 210.7 339 41.3
Gohir.A04G092832 Gossypium hirsutum HOM05D005979 ORTHO05D007848 1.4e-51 207.2 147 70.1
Nitab4.5_0005200g0020 Nicotiana tabacum HOM05D005979 ORTHO05D007848 1.8e-46 190.3 126 73.8
Sabra06G0028100 Salix brachista HOM05D005979 ORTHO05D007848 2.3e-46 189.9 110 75.5
BcaC09g48108 Brassica carinata HOM05D005979 ORTHO05D007848 4.5e-42 175.6 120 69.2
Nitab4.5_0005200g0030 Nicotiana tabacum HOM05D005979 ORTHO05D007848 5.4e-35 152.1 83 77.1
COL.COLO4_00246 Corchorus olitorius HOM05D005979 ORTHO05D007848 6.6e-33 145.2 97 73.2
FAN03G2583 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.5e-29 134.0 83 78.3
FAN08G3312 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.5e-29 134.0 83 78.3
FAN25G1846 Fragaria x ananassa HOM05D005979 ORTHO05D007848 1.0e-25 121.3 75 80.0
SEGI_39367 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 2.8e-23 113.2 59 83.1
SEGI_37896 Sequoiadendron giganteum HOM05D005979 ORTHO05D007848 2.2e-20 103.6 147 44.9
Glyma.08G011202 Glycine max HOM05D005979 ORTHO05D007848 7.8e-18 95.1 63 71.4
A01p41990 Brassica napus HOM05D005979 ORTHO05D041676 2.0e-13 80.5 119 42.0
CBR_g27740 Chara braunii HOM05D000738 ORTHO05D000675 1.3e-12 77.8 101 39.6
BraA01t04540Z Brassica rapa HOM05D005979 ORTHO05D007848 1.1e-11 74.7 50 62.0
A01p41070 Brassica napus HOM05D005979 ORTHO05D007848 5.4e-11 72.4 50 60.0
BNapus_Darmor_BZH_scaffold_78p00640 Brassica napus HOM05D005979 ORTHO05D007848 5.4e-11 72.4 50 60.0
BraA01t04267Z Brassica rapa HOM05D005979 ORTHO05D041676 6.6e-09 65.5 37 78.4
BolC1t05773H Brassica oleracea HOM05D005979 ORTHO05D007848 1.5e-08 64.3 43 60.5
PRCOL_00006618 Prasinoderma coloniale HOM05D000738 ORTHO05D000675 4.0e-06 56.2 91 33.0
BcaC09g47773 Brassica carinata HOM05D005979 ORTHO05D007848 5.2e-06 55.8 38 57.9
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 6.8e-06 55.5 65 41.5
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 6.8e-06 55.5 75 37.3
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 6.8e-06 55.5 77 37.7
Cfa025444 Carpinus fangiana HOM05D005979 ORTHO05D122864 8.9e-06 55.1 76 39.5
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 8.9e-06 55.1 73 41.1


User provided reference genes

Program Settings