Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1000600 Malus domestica HOM05D000104 ORTHO05D004363 1.5e-178 629.4 317 100.0
MD11G1000100 Malus domestica HOM05D000104 ORTHO05D004363 3.1e-160 568.5 310 90.6
Prupe.6G000100 Prunus persica HOM05D000104 ORTHO05D004363 1.9e-157 559.3 310 89.7
RcHm_v2.0_Chr5g0084181 Rosa chinensis HOM05D000104 ORTHO05D004363 4.0e-147 525.0 309 84.1
FAN21G1945 Fragaria x ananassa HOM05D000104 ORTHO05D004363 1.5e-146 523.1 309 84.1
FvH4_3g46101 Fragaria vesca HOM05D000104 ORTHO05D004363 5.7e-146 521.2 309 84.1
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 2.0e-130 469.5 281 81.9
CSS0023365 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004363 5.0e-126 454.9 317 73.2
Cfa017683 Carpinus fangiana HOM05D000104 ORTHO05D004363 2.3e-123 446.0 316 71.8
Atru.chr2.1616 Acer truncatum HOM05D000104 ORTHO05D004363 6.8e-123 444.5 317 72.9
Ciclev10030472m.g Citrus clementina HOM05D000104 ORTHO05D004363 7.5e-122 441.0 317 72.2
Manes.08G155800 Manihot esculenta HOM05D000104 ORTHO05D004363 1.3e-121 440.3 314 71.3
VMungo1127G2256 Vigna mungo HOM05D000104 ORTHO05D004363 2.9e-121 439.1 315 69.2
Glyma.12G002300 Glycine max HOM05D000104 ORTHO05D004363 6.4e-121 438.0 315 68.9
Dinv09441 Davidia involucrata HOM05D000104 ORTHO05D004363 1.1e-120 437.2 317 71.6
Dinv37465 Davidia involucrata HOM05D000104 ORTHO05D004363 1.1e-120 437.2 317 71.3
CANSAT35G1590 Cannabis sativa HOM05D000104 ORTHO05D004363 4.1e-120 435.3 310 69.7
COL.COLO4_33474 Corchorus olitorius HOM05D000104 ORTHO05D004363 1.3e-118 430.3 316 70.6
Glyma.09G234400 Glycine max HOM05D000104 ORTHO05D004363 3.0e-118 429.1 315 67.9
Phvul.011G002900 Phaseolus vulgaris HOM05D000104 ORTHO05D004363 1.1e-117 427.2 315 67.6
Thecc.05G236400 Theobroma cacao HOM05D000104 ORTHO05D004363 1.9e-117 426.4 316 70.3
Potri.013G068400 Populus trichocarpa HOM05D000104 ORTHO05D004363 3.3e-117 425.6 314 69.4
GSVIVG01019359001 Vitis vinifera HOM05D000104 ORTHO05D004363 4.3e-117 425.2 328 67.1
TWI32G0549 Tripterygium wilfordii HOM05D000104 ORTHO05D004363 1.2e-116 423.7 315 69.5
Nn3g17003 Nelumbo nucifera HOM05D000104 ORTHO05D004363 1.6e-116 423.3 318 68.6
Lj3g0018732 Lotus japonicus HOM05D000104 ORTHO05D004363 4.7e-116 421.8 315 67.3
Gohir.A13G159800 Gossypium hirsutum HOM05D000104 ORTHO05D004363 1.1e-115 420.6 315 68.3
Gorai.013G197700 Gossypium raimondii HOM05D000104 ORTHO05D004363 1.8e-115 419.9 315 68.3
Gohir.D13G165000 Gossypium hirsutum HOM05D000104 ORTHO05D004363 4.0e-115 418.7 315 68.3
Ca_19676_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004363 8.9e-115 417.5 315 66.7
Duzib177G0255 Durio zibethinus HOM05D000104 ORTHO05D004363 1.5e-114 416.8 317 69.4
Lalb_Chr01g0000141 Lupinus albus HOM05D000104 ORTHO05D004363 2.6e-114 416.0 316 66.5
Actinidia03314 Actinidia chinensis HOM05D000104 ORTHO05D004363 4.4e-114 415.2 314 68.2
ClCG05G011380 Citrullus lanatus HOM05D000104 ORTHO05D004363 7.5e-114 414.5 316 65.8
Duzib128G0660 Durio zibethinus HOM05D000104 ORTHO05D004363 2.2e-113 412.9 316 69.0
Sed0011777 Sechium edule HOM05D000104 ORTHO05D004363 2.9e-113 412.5 316 65.5
Psat7g148080 Pisum sativum HOM05D000104 ORTHO05D004363 9.2e-112 407.5 315 65.7
Medtr4g035100 Medicago truncatula HOM05D000104 ORTHO05D004363 1.2e-111 407.1 315 65.1
TPR.G31923 Trifolium pratense HOM05D000104 ORTHO05D004363 6.0e-111 404.8 315 64.4
MELO3C020235.2 Cucumis melo HOM05D000104 ORTHO05D004363 1.0e-110 404.1 316 64.6
Solyc08g074520.2 Solanum lycopersicum HOM05D000104 ORTHO05D004363 1.5e-109 400.2 314 66.2
Aqoxy7G00075 Aquilegia oxysepala HOM05D000104 ORTHO05D004363 1.9e-109 399.8 325 65.5
Sopen08g023150 Solanum pennellii HOM05D000104 ORTHO05D004363 3.3e-109 399.1 314 65.9
PSO832G0838 Papaver somniferum HOM05D000104 ORTHO05D004363 4.3e-109 398.7 319 67.4
PGR083G0814 Punica granatum HOM05D000104 ORTHO05D004363 1.6e-108 396.7 315 67.3
CsaV3_3G021040 Cucumis sativus L. HOM05D000104 ORTHO05D004363 2.1e-108 396.4 316 63.3
CsaV3_4G017740 Cucumis sativus L. HOM05D000104 ORTHO05D004363 2.1e-108 396.4 316 63.3
arahy.Tifrunner.gnm1.ann1.64GWQS Arachis hypogaea HOM05D000104 ORTHO05D004363 8.1e-108 394.4 357 58.8
DCAR_002184 Daucus carota HOM05D007440 ORTHO05D004363 1.8e-107 393.3 317 65.3
Eucgr.D01125 Eucalyptus grandis HOM05D000104 ORTHO05D004363 2.3e-107 392.9 315 65.7
SalBow4G3014 Salvia bowleyana HOM05D000104 ORTHO05D004363 4.0e-107 392.1 317 64.4
MSTRG.11830 Avicennia marina HOM05D000104 ORTHO05D004363 2.6e-106 389.4 317 64.7
THA.LOC104819143 Tarenaya hassleriana HOM05D000104 ORTHO05D004363 1.7e-105 386.7 318 63.5
Migut.A00510 Erythranthe guttata HOM05D000104 ORTHO05D004363 2.2e-105 386.3 315 64.4
Oeu007492.1 Olea europaea HOM05D000104 ORTHO05D004363 2.2e-105 386.3 318 65.4
Aa31sc392G40 Aethionema arabicum HOM05D000104 ORTHO05D004363 4.6e-103 378.6 317 63.4
HanXRQChr03g0082351 Helianthus annuus HOM05D000104 ORTHO05D004363 8.6e-102 374.4 317 61.8
SGA_v2.0_scaffold27G11711 Striga asiatica HOM05D000104 ORTHO05D004363 8.6e-102 374.4 330 60.6
vmacro00211 Vaccinium macrocarpon HOM05D000104 ORTHO05D004363 8.6e-102 374.4 383 55.4
Thhalv10010052m.g Eutrema salsugineum HOM05D000104 ORTHO05D004363 1.5e-101 373.6 314 63.4
ECA240G3782 Erigeron canadensis HOM05D000104 ORTHO05D004363 4.3e-101 372.1 317 61.5
Sp5g08110 Schrenkiella parvula HOM05D000104 ORTHO05D004363 4.3e-101 372.1 314 62.4
A09p47280 Brassica napus HOM05D000104 ORTHO05D004363 1.2e-100 370.5 314 62.7
CARHR164200 Cardamine hirsuta HOM05D000104 ORTHO05D004363 2.8e-100 369.4 315 63.5
Cc11_g04400 Coffea canephora HOM05D000104 ORTHO05D004363 3.6e-100 369.0 342 57.9
C08p29510 Brassica napus HOM05D000104 ORTHO05D004363 2.4e-99 366.3 314 61.8
AT3G54280 Arabidopsis thaliana HOM05D000104 ORTHO05D004363 5.2e-99 365.2 315 62.5
AL5G35320 Arabidopsis lyrata HOM05D000104 ORTHO05D004363 8.9e-99 364.4 314 61.8
BolC8t50557H Brassica oleracea HOM05D000104 ORTHO05D004363 2.0e-98 363.2 314 61.5
arahy.Tifrunner.gnm1.ann1.YM0GIL Arachis hypogaea HOM05D000104 ORTHO05D004363 3.4e-98 362.5 277 68.2
BraA09t40189Z Brassica rapa HOM05D000104 ORTHO05D004363 3.4e-98 362.5 324 60.8
Carub.0005s2087 Capsella rubella HOM05D000104 ORTHO05D004363 3.4e-98 362.5 315 62.5
BcaC02g09076 Brassica carinata HOM05D000104 ORTHO05D004363 5.8e-98 361.7 314 62.1
Lsat_1_v5_gn_5_59321 Lactuca sativa HOM05D000104 ORTHO05D004363 9.9e-98 360.9 317 61.5
SHI06790 Sapria himalayana HOM05D000190 ORTHO05D004363 6.0e-95 351.7 315 61.0
HPP92_015726 Vanilla planifolia HOM05D000104 ORTHO05D004363 7.8e-95 351.3 317 61.2
CDE06G1340 Ceratophyllum demersum HOM05D000104 ORTHO05D004363 3.3e-93 345.9 323 58.5
Peaxi162Scf00213g01732 Petunia axillaris HOM05D000104 ORTHO05D004363 1.1e-88 330.9 278 62.6
ATR0665G650 Amborella trichopoda HOM05D000104 ORTHO05D004363 1.2e-87 327.4 300 59.0
Sabra13G0059700 Salix brachista HOM05D000104 ORTHO05D004363 3.5e-87 325.9 283 60.8
Zm00001eb297280 Zea mays HOM05D000104 ORTHO05D004363 3.9e-86 322.4 324 57.4
Lj7C413G9 Lonicera japonica HOM05D000104 ORTHO05D004363 7.4e-85 318.2 292 59.9
unitig_92.g28135 Utricularia gibba HOM05D000104 ORTHO05D004363 4.6e-79 298.9 286 55.6
unitig_93.g30710 Utricularia gibba HOM05D000104 ORTHO05D004363 6.7e-78 295.0 269 56.5
CiPaw.09G169600 Carya illinoinensis HOM05D000104 ORTHO05D004363 2.8e-76 289.7 226 65.9
SEGI_24237 Sequoiadendron giganteum HOM05D000104 ORTHO05D004363 6.2e-76 288.5 321 53.3
Hund23685 Selenicereus undatus HOM05D000104 ORTHO05D004363 2.2e-73 280.0 314 53.8
Sc05g0007890 Simmondsia chinensis HOM05D000104 ORTHO05D004363 6.5e-73 278.5 327 53.5
Pp3c3_11220 Physcomitrium patens HOM05D000104 ORTHO05D004363 5.5e-72 275.4 325 50.2
Mapoly0038s0059 Marchantia polymorpha HOM05D000104 ORTHO05D004363 6.0e-71 271.9 324 51.2
AUR62014777 Chenopodium quinoa HOM05D000104 ORTHO05D004363 5.7e-69 265.4 318 50.6
AUR62016963 Chenopodium quinoa HOM05D000104 ORTHO05D004363 2.1e-68 263.5 308 50.6
AagrBONN_evm.TU.Sc2ySwM_228.1549 Anthoceros agrestis HOM05D000104 ORTHO05D004363 4.8e-68 262.3 313 50.2
Ah.14g089210 Amaranthus hybridus HOM05D000104 ORTHO05D004363 1.5e-66 257.3 310 48.7
QL09p044755 Quercus lobata HOM05D000104 ORTHO05D004363 8.7e-62 241.5 178 68.0
Rhsim03G0207500 Rhododendron simsii HOM05D000104 ORTHO05D004363 4.3e-61 239.2 466 36.7
SMO223G0022 Selaginella moellendorffii HOM05D000104 ORTHO05D004363 2.6e-58 229.9 328 46.6
SGA_v2.0_scaffold269G46291 Striga asiatica HOM05D000104 ORTHO05D004363 3.8e-49 199.5 155 67.7
Hma1.2p1_0268F.1_g107680 Hydrangea macrophylla HOM05D000104 ORTHO05D004363 6.5e-49 198.7 139 72.7
SGA_v2.0_scaffold447G51747 Striga asiatica HOM05D000104 ORTHO05D004363 6.5e-49 198.7 139 74.1
Nitab4.5_0002482g0010 Nicotiana tabacum HOM05D000104 ORTHO05D004363 8.5e-49 198.4 141 72.3
CAN.G195.25 Capsicum annuum HOM05D000104 ORTHO05D004363 7.2e-48 195.3 136 72.1
Haze_20464 Corylus avellana HOM05D000104 ORTHO05D004363 2.6e-45 186.8 192 53.1
C04p38170 Brassica napus HOM05D000104 ORTHO05D004363 1.2e-42 177.9 192 52.1
Cpa.g.sc73.37 Carica papaya HOM05D000104 ORTHO05D004363 1.0e-41 174.9 143 64.3
CAN.G195.24 Capsicum annuum HOM05D000104 ORTHO05D004363 1.8e-38 164.1 151 56.3
BolC4t25391H Brassica oleracea HOM05D000104 ORTHO05D004363 1.1e-35 154.8 150 54.7
CBR_g57043 Chara braunii HOM05D000104 ORTHO05D004363 1.8e-35 154.1 233 43.3
C04p38160 Brassica napus HOM05D000104 ORTHO05D004363 5.3e-35 152.5 150 53.3
Nitab4.5_0001131g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004363 1.2e-31 141.4 102 67.6
Haze_20467 Corylus avellana HOM05D000104 ORTHO05D004363 1.7e-28 131.0 92 66.3
Cre16.g687301 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D004363 2.8e-28 130.2 340 31.5
Hma1.2p1_0268F.1_g107670 Hydrangea macrophylla HOM05D000104 ORTHO05D004363 3.7e-28 129.8 100 68.0
MCO02G056 Micromonas commoda HOM05D000104 ORTHO05D004363 1.8e-19 100.9 263 31.2
BraA04t16249Z Brassica rapa HOM05D000104 ORTHO05D004363 2.2e-12 77.4 45 88.9
PRCOL_00001942 Prasinoderma coloniale HOM05D000104 ORTHO05D004363 2.3e-09 67.4 349 26.9
QL10p058190 Quercus lobata HOM05D000104 ORTHO05D004363 2.3e-09 67.4 36 72.2
EL10Ac6g14346 Beta vulgaris HOM05D000104 ORTHO05D004363 1.9e-08 64.3 48 64.6
VMungo0464G1762 Vigna mungo HOM05D000001 ORTHO05D001247 3.3e-08 63.5 128 37.5


User provided reference genes

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