Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 3.4e-156 555.1 298 100.0
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 4.3e-151 538.1 301 97.3
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 1.0e-149 533.5 307 95.1
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 2.9e-147 525.4 274 96.7
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 4.1e-146 521.5 298 95.0
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 7.0e-146 520.8 298 89.9
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 7.0e-146 520.8 272 95.2
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 2.0e-145 519.2 273 94.9
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 3.5e-145 518.5 273 94.1
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 1.3e-144 516.5 273 94.5
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.3e-144 516.5 298 89.3
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.0e-144 515.4 298 89.3
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.1e-143 513.5 298 85.6
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 3.3e-143 511.9 298 88.3
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.3e-143 511.5 303 91.7
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 9.5e-143 510.4 302 92.1
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.6e-142 509.6 272 93.0
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 2.1e-142 509.2 298 86.6
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 2.1e-142 509.2 298 86.6
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.1e-142 509.2 300 88.0
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 2.1e-142 509.2 273 93.0
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 4.7e-142 508.1 273 92.7
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 8.0e-142 507.3 305 86.6
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 8.0e-142 507.3 273 92.3
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 8.0e-142 507.3 298 93.0
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 1.0e-141 506.9 298 90.9
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 1.8e-141 506.1 273 92.7
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.8e-141 506.1 299 89.6
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.1e-141 505.4 298 89.9
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 6.8e-141 504.2 304 88.8
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 6.8e-141 504.2 274 92.3
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.5e-140 503.1 272 92.6
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 2.0e-140 502.7 304 88.5
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.0e-140 502.7 298 84.9
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.6e-140 502.3 299 90.6
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 1.3e-139 500.0 273 91.2
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 1.3e-139 500.0 273 90.8
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 1.3e-139 500.0 272 93.0
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.2e-139 499.2 298 85.2
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.7e-139 498.4 298 83.9
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 2.4e-138 495.7 301 89.0
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 3.2e-138 495.4 273 89.0
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 7.0e-138 494.2 304 88.8
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 2.7e-137 492.3 298 89.3
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 3.5e-137 491.9 274 89.8
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 7.8e-137 490.7 273 87.9
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 1.0e-136 490.3 268 90.7
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 1.3e-136 490.0 273 89.7
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 1.3e-136 490.0 273 89.7
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.7e-136 489.6 273 89.4
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 3.9e-136 488.4 274 88.0
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 6.6e-136 487.6 275 89.1
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 1.9e-135 486.1 273 86.8
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.3e-135 484.2 298 83.6
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.3e-135 484.2 298 82.6
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 2.8e-134 482.3 299 81.6
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 2.3e-133 479.2 298 80.9
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.1e-133 478.8 274 85.4
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.0e-133 478.4 298 85.2
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 8.9e-133 477.2 272 84.9
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 3.4e-132 475.3 298 80.5
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 5.8e-132 474.6 304 84.9
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 7.5e-132 474.2 289 82.0
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 3.7e-131 471.9 297 83.5
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 6.4e-131 471.1 273 85.3
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 1.1e-130 470.3 273 85.0
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 1.4e-130 469.9 298 79.5
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 3.2e-130 468.8 296 79.4
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 5.4e-130 468.0 298 81.5
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 5.4e-130 468.0 296 79.1
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 7.1e-130 467.6 273 82.4
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 2.1e-129 466.1 277 84.5
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 2.1e-129 466.1 277 84.5
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 2.1e-129 466.1 273 83.9
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 4.6e-129 464.9 341 72.1
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 1.3e-128 463.4 298 81.5
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 8.6e-128 460.7 275 83.6
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 1.9e-127 459.5 273 83.2
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 3.3e-127 458.8 282 82.6
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 4.3e-127 458.4 274 82.5
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 5.6e-127 458.0 274 82.8
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 5.6e-127 458.0 274 82.8
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 7.3e-127 457.6 297 78.8
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 1.2e-126 456.8 274 83.2
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 1.6e-126 456.4 310 77.1
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 2.1e-126 456.1 273 83.5
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 2.1e-126 456.1 317 75.4
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 1.4e-125 453.4 310 75.5
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 1.8e-125 453.0 273 81.0
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 3.1e-125 452.2 338 76.6
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 4.0e-125 451.8 282 83.0
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 6.8e-125 451.1 300 75.3
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 1.2e-124 450.3 282 81.6
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.3e-123 446.8 273 82.8
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.3e-123 446.8 273 82.8
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.7e-123 445.3 309 73.1
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 3.7e-123 445.3 273 81.7
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 1.1e-122 443.7 296 77.0
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 3.2e-122 442.2 299 74.6
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 2.1e-121 439.5 269 82.2
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 3.0e-120 435.6 276 77.5
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.9e-120 435.3 264 76.9
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 3.9e-120 435.3 276 77.9
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.3e-119 432.2 298 72.5
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 3.3e-119 432.2 280 80.7
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 2.1e-118 429.5 276 76.4
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 3.8e-115 418.7 233 90.1
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 1.9e-114 416.4 222 92.8
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 4.3e-111 405.2 257 86.4
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.8e-109 399.8 264 73.5
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.7e-105 386.0 275 72.7
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 2.7e-105 386.0 275 72.7
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 6.6e-104 381.3 273 73.6
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 1.4e-101 373.6 275 71.3
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 2.9e-99 365.9 205 88.8
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 3.9e-96 355.5 255 71.0
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 8.7e-96 354.4 239 71.5
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 8.4e-91 337.8 281 62.6
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.9e-90 336.7 246 69.5
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 7.1e-90 334.7 211 80.1
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.7e-89 332.8 201 84.1
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.5e-87 327.0 280 60.0
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 5.7e-87 325.1 278 59.4
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 1.3e-86 323.9 267 64.0
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 3.7e-86 322.4 181 89.5
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 6.9e-85 318.2 295 58.3
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.0e-83 314.3 214 69.6
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 1.9e-82 310.1 190 81.6
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 6.7e-80 301.6 181 82.3
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 6.5e-75 285.0 263 57.4
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 4.3e-71 272.3 246 64.6
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 4.8e-70 268.9 147 93.2
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 4.7e-65 252.3 190 67.4
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 3.0e-48 196.4 116 86.2
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 8.8e-48 194.9 96 95.8
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 4.4e-47 192.6 121 81.0
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 4.4e-47 192.6 129 74.4
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 2.5e-42 176.8 120 74.2
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 4.2e-42 176.0 260 41.5
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 3.6e-41 172.9 104 81.7
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 4.4e-39 166.0 122 73.0
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 1.1e-37 161.4 78 98.7
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 9.2e-37 158.3 94 81.9
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 2.3e-32 143.7 103 71.8
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 4.0e-32 142.9 268 32.8
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 5.2e-32 142.5 108 81.5
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 1.1e-29 134.8 242 38.4
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.4e-29 134.4 258 34.1
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 5.9e-28 129.0 118 61.9
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 5.9e-28 129.0 118 61.9
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 1.0e-27 128.3 186 43.0
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 1.0e-27 128.3 118 62.7
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 1.0e-27 128.3 66 92.4
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 1.3e-27 127.9 247 33.2
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 1.7e-27 127.5 105 67.6
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 8.6e-27 125.2 118 60.2
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 1.1e-26 124.8 118 61.0
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 1.2e-25 121.3 118 60.2
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 2.8e-25 120.2 118 59.3
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 8.3e-22 108.6 155 41.3
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.4e-21 107.8 87 65.5
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 7.0e-21 105.5 155 41.9
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 3.9e-19 99.8 83 65.1
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 8.1e-17 92.0 70 72.9
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 2.2e-14 84.0 46 80.4
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 9.2e-13 78.6 43 86.0


User provided reference genes

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