Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1260800 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1448.0 730 100.0
MD07G1060700 Malus domestica HOM05D005018 ORTHO05D006786 0.0e+00 1346.3 730 94.0
RcHm_v2.0_Chr1g0331701 Rosa chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1251.5 730 86.3
FAN06G2729 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1216.1 756 82.0
QL10p041885 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1216.1 756 83.3
QL10p041655 Quercus lobata HOM05D005018 ORTHO05D006786 0.0e+00 1211.8 756 83.1
CiPaw.03G118700 Carya illinoinensis HOM05D005018 ORTHO05D006786 0.0e+00 1208.0 734 83.8
FAN03G0747 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1204.9 753 81.7
TAR625G0766 Trochodendron aralioides HOM05D005018 ORTHO05D006786 0.0e+00 1204.9 730 84.1
Dinv15533 Davidia involucrata HOM05D005018 ORTHO05D006786 0.0e+00 1203.3 730 83.6
CSS0041776 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1186.8 722 83.1
Cfa002185 Carpinus fangiana HOM05D005018 ORTHO05D006786 0.0e+00 1184.5 736 82.9
CANSAT01G0968 Cannabis sativa HOM05D005018 ORTHO05D006786 0.0e+00 1183.3 733 81.7
CSS0009965 Camellia sinensis var. sinensis HOM05D005018 ORTHO05D006786 0.0e+00 1182.9 741 81.6
Nn5g28451 Nelumbo nucifera HOM05D005018 ORTHO05D006786 0.0e+00 1179.9 718 83.1
Actinidia06572 Actinidia chinensis HOM05D005018 ORTHO05D006786 0.0e+00 1176.0 723 82.6
CsaV3_6G041220 Cucumis sativus L. HOM05D005018 ORTHO05D006786 0.0e+00 1171.4 735 81.5
Duzib264G1136 Durio zibethinus HOM05D005018 ORTHO05D006786 0.0e+00 1171.0 716 83.2
Gorai.006G006100 Gossypium raimondii HOM05D005018 ORTHO05D006786 0.0e+00 1169.1 720 82.8
Sed0008983 Sechium edule HOM05D005018 ORTHO05D006786 0.0e+00 1169.1 720 82.9
Gohir.D09G004500 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1167.9 722 82.4
Glyma.08G001700 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1167.5 734 80.7
arahy.Tifrunner.gnm1.ann1.YY52IF Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1166.4 742 80.7
Glyma.05G193600 Glycine max HOM05D005018 ORTHO05D006786 0.0e+00 1163.7 733 80.9
Manes.02G085200 Manihot esculenta HOM05D005018 ORTHO05D006786 0.0e+00 1163.7 679 86.0
PGR119G0715 Punica granatum HOM05D005018 ORTHO05D006786 0.0e+00 1163.3 733 81.9
MELO3C024598.2 Cucumis melo HOM05D005018 ORTHO05D006786 0.0e+00 1162.5 734 80.9
Medtr8g094030 Medicago truncatula HOM05D005018 ORTHO05D006786 0.0e+00 1159.8 736 81.2
Gohir.A09G005200 Gossypium hirsutum HOM05D005018 ORTHO05D006786 0.0e+00 1159.4 712 82.9
VMungo0251G2317 Vigna mungo HOM05D005018 ORTHO05D006786 0.0e+00 1159.4 729 80.4
SalBow6G7214 Salvia bowleyana HOM05D005018 ORTHO05D006786 0.0e+00 1157.5 728 81.9
arahy.Tifrunner.gnm1.ann1.IZT9KT Arachis hypogaea HOM05D005018 ORTHO05D006786 0.0e+00 1157.1 761 78.8
Ca_17625_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 0.0e+00 1156.7 730 80.7
Lalb_Chr07g0184291 Lupinus albus HOM05D005018 ORTHO05D006786 0.0e+00 1154.0 736 79.9
Lj4g0009092 Lotus japonicus HOM05D005018 ORTHO05D006786 0.0e+00 1152.5 733 80.1
TWI79G0394 Tripterygium wilfordii HOM05D005018 ORTHO05D006786 0.0e+00 1151.7 735 80.7
Sopen01g030230 Solanum pennellii HOM05D005018 ORTHO05D006786 0.0e+00 1151.0 706 82.9
Aqoxy6G00298 Aquilegia oxysepala HOM05D005018 ORTHO05D006786 0.0e+00 1150.6 720 80.4
Migut.D00797 Erythranthe guttata HOM05D005018 ORTHO05D006786 0.0e+00 1149.8 725 80.4
TPR.G37346 Trifolium pratense HOM05D005018 ORTHO05D006786 0.0e+00 1149.0 655 86.6
DCAR_018989 Daucus carota HOM05D005018 ORTHO05D006786 0.0e+00 1147.9 732 80.1
AUR62006851 Chenopodium quinoa HOM05D005018 ORTHO05D006786 0.0e+00 1146.3 693 83.0
MSTRG.21275 Avicennia marina HOM05D005018 ORTHO05D006786 0.0e+00 1144.0 725 80.3
Rhsim12G0009100 Rhododendron simsii HOM05D005018 ORTHO05D006786 0.0e+00 1142.5 688 83.9
Potri.005G066300 Populus trichocarpa HOM05D005018 ORTHO05D006786 0.0e+00 1141.7 719 81.4
CAN.G410.44 Capsicum annuum HOM05D005018 ORTHO05D006786 0.0e+00 1141.3 688 83.1
THA.LOC104804457 Tarenaya hassleriana HOM05D005018 ORTHO05D006786 0.0e+00 1140.6 709 81.1
EL10Ac4g09610 Beta vulgaris HOM05D005018 ORTHO05D006786 0.0e+00 1138.6 715 80.3
Peaxi162Scf00087g00314 Petunia axillaris HOM05D005018 ORTHO05D006786 0.0e+00 1132.1 701 82.7
ECA240G3046 Erigeron canadensis HOM05D005018 ORTHO05D006786 0.0e+00 1125.9 722 79.2
Hund28182 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1123.6 782 74.6
Hund28185 Selenicereus undatus HOM05D005018 ORTHO05D006786 0.0e+00 1123.6 782 74.6
FAN10G3591 Fragaria x ananassa HOM05D005018 ORTHO05D006786 0.0e+00 1120.9 748 77.8
CARHR104850 Cardamine hirsuta HOM05D005018 ORTHO05D006786 0.0e+00 1119.4 717 79.9
AT2G13440 Arabidopsis thaliana HOM05D005018 ORTHO05D006786 0.0e+00 1112.8 689 81.4
Carub.0003s2795 Capsella rubella HOM05D005018 ORTHO05D006786 0.0e+00 1112.4 716 79.6
A03p44940 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1111.3 709 80.1
HanXRQChr03g0092941 Helianthus annuus HOM05D005018 ORTHO05D006786 0.0e+00 1110.1 719 79.0
AL3G45320 Arabidopsis lyrata HOM05D005018 ORTHO05D006786 0.0e+00 1109.7 694 81.0
BcaB08g34530 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1108.6 710 80.0
Thhalv10022575m.g Eutrema salsugineum HOM05D005018 ORTHO05D006786 0.0e+00 1108.2 704 80.0
BcaC01g03124 Brassica carinata HOM05D005018 ORTHO05D006786 0.0e+00 1107.8 714 79.6
C03p55820 Brassica napus HOM05D005018 ORTHO05D006786 0.0e+00 1107.8 714 79.6
Thecc.01G136300 Theobroma cacao HOM05D005018 ORTHO05D006786 0.0e+00 1106.7 718 79.9
MBI03_g13501_MAGBIO Magnolia biondii HOM05D005018 ORTHO05D006786 0.0e+00 1105.5 640 85.3
Sp3g26900 Schrenkiella parvula HOM05D005018 ORTHO05D006786 0.0e+00 1103.6 689 80.8
BraA03t13631Z Brassica rapa HOM05D005018 ORTHO05D006786 0.0e+00 1103.2 732 77.9
Sabra05G0054700 Salix brachista HOM05D005018 ORTHO05D006786 0.0e+00 1103.2 799 73.0
vmacro23049 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 0.0e+00 1099.3 919 65.4
Os01g0960300 Oryza sativa ssp. japonica HOM05D005018 ORTHO05D006786 0.0e+00 1099.0 645 82.3
Lsat_1_v5_gn_3_126721 Lactuca sativa HOM05D005018 ORTHO05D006786 0.0e+00 1098.2 751 75.8
ATR0730G013 Amborella trichopoda HOM05D005018 ORTHO05D006786 0.0e+00 1095.5 652 83.1
Psat7g044640 Pisum sativum HOM05D005018 ORTHO05D006786 0.0e+00 1093.2 732 77.2
FvH4_7g05150 Fragaria vesca HOM05D005018 ORTHO05D006786 0.0e+00 1092.0 664 83.7
BolC3t17863H Brassica oleracea HOM05D005018 ORTHO05D006786 0.0e+00 1090.5 718 78.7
HPP92_016130 Vanilla planifolia HOM05D005018 ORTHO05D006786 0.0e+00 1088.2 665 80.3
Nitab4.5_0000316g0160 Nicotiana tabacum HOM05D005018 ORTHO05D006786 0.0e+00 1086.2 722 78.5
Aa31sc255G10 Aethionema arabicum HOM05D005018 ORTHO05D006786 0.0e+00 1084.7 695 79.1
ClCG01G015110 Citrullus lanatus HOM05D005018 ORTHO05D006786 0.0e+00 1083.6 746 76.1
COL.COLO4_35799 Corchorus olitorius HOM05D005018 ORTHO05D006786 0.0e+00 1082.0 723 77.9
SGA_v2.0_scaffold5G02934 Striga asiatica HOM05D005018 ORTHO05D006786 0.0e+00 1075.5 804 70.5
Phvul.002G274000 Phaseolus vulgaris HOM05D005018 ORTHO05D006786 1.1e-306 1056.2 733 74.6
Prupe.5G002000 Prunus persica HOM05D005018 ORTHO05D006786 1.5e-306 1055.8 567 94.0
GSVIVG01026449001 Vitis vinifera HOM05D005018 ORTHO05D006786 1.0e-302 1043.1 788 70.6
Pp3c16_24810 Physcomitrium patens HOM05D005018 ORTHO05D006786 2.3e-291 1005.4 656 74.8
Mapoly0069s0053 Marchantia polymorpha HOM05D005018 ORTHO05D006786 9.7e-290 1000.0 688 72.5
Sc09g0002290 Simmondsia chinensis HOM05D005018 ORTHO05D006786 2.7e-284 981.9 556 86.9
CBR_g18682 Chara braunii HOM05D005018 ORTHO05D006786 2.2e-278 962.2 648 73.1
Solyc01g068290.4 Solanum lycopersicum HOM05D005018 ORTHO05D006786 2.4e-272 942.2 529 87.9
Atru.chr4.947 Acer truncatum HOM05D005018 ORTHO05D006786 1.7e-270 936.0 555 85.4
Eucgr.I00131 Eucalyptus grandis HOM05D005018 ORTHO05D006786 3.2e-269 931.8 560 85.0
Lj2A615G13 Lonicera japonica HOM05D005018 ORTHO05D006786 8.8e-267 923.7 530 86.2
unitig_0.g220 Utricularia gibba HOM05D005018 ORTHO05D006786 9.7e-266 920.2 649 72.9
SMO139G0120 Selaginella moellendorffii HOM05D005018 ORTHO05D006786 1.1e-264 916.8 602 73.8
Oeu006102.4 Olea europaea HOM05D005018 ORTHO05D006786 2.4e-264 915.6 531 83.8
Cc02_g29440 Coffea canephora HOM05D005018 ORTHO05D006786 8.5e-262 907.1 524 85.5
Ah.06g190950 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.0e-258 896.0 591 78.2
Cre10.g428678 Chlamydomonas reinhardtii HOM05D005018 ORTHO05D006786 9.1e-256 887.1 632 68.8
Oeu026685.1 Olea europaea HOM05D005018 ORTHO05D006786 1.3e-254 883.2 604 74.5
MCO09G341 Micromonas commoda HOM05D005018 ORTHO05D006786 1.0e-243 847.0 676 63.5
Ciclev10003172m.g Citrus clementina HOM05D005018 ORTHO05D006786 3.0e-238 828.9 505 84.0
Nitab4.5_0006307g0020 Nicotiana tabacum HOM05D005018 ORTHO05D006786 1.1e-237 827.0 507 83.6
PRCOL_00006684 Prasinoderma coloniale HOM05D005018 ORTHO05D006786 7.5e-226 787.7 612 64.7
vmacro23145 Vaccinium macrocarpon HOM05D005018 ORTHO05D006786 1.2e-218 763.8 503 77.7
MD07G1060500 Malus domestica HOM05D005018 ORTHO05D006786 2.6e-202 709.5 414 87.0
AagrBONN_evm.TU.Sc2ySwM_344.2451 Anthoceros agrestis HOM05D005018 ORTHO05D006786 2.2e-193 679.9 396 82.6
Zm00001eb140420 Zea mays HOM05D005018 ORTHO05D006786 1.1e-184 651.0 407 78.9
PGSC0003DMG400006748 Solanum tuberosum HOM05D005018 ORTHO05D006786 8.7e-182 641.3 352 88.1
AUR62000506 Chenopodium quinoa HOM05D005018 ORTHO05D006786 1.0e-174 617.8 401 76.8
Cpa.g.sc42.187 Carica papaya HOM05D005018 ORTHO05D006786 1.6e-154 550.8 366 79.5
Eucgr.I00140 Eucalyptus grandis HOM05D005018 ORTHO05D006786 5.5e-144 515.8 447 63.5
Haze_26929 Corylus avellana HOM05D005018 ORTHO05D006786 9.2e-131 471.9 599 43.4
Cfa023424 Carpinus fangiana HOM05D005018 ORTHO05D006786 1.2e-127 461.5 649 40.8
Haze_25310 Corylus avellana HOM05D005018 ORTHO05D006786 1.5e-109 401.4 371 59.0
MCO09G386 Micromonas commoda HOM05D005018 ORTHO05D006786 4.4e-109 399.8 657 38.2
BolC8t48115H Brassica oleracea HOM05D005018 ORTHO05D006786 2.2e-108 397.5 358 59.8
Haze_26659 Corylus avellana HOM05D005018 ORTHO05D006786 7.8e-106 389.0 499 44.3
BcaC07g37734 Brassica carinata HOM05D005018 ORTHO05D006786 4.0e-94 350.1 318 59.1
Ciclev10002140m.g Citrus clementina HOM05D005018 ORTHO05D006786 5.3e-94 349.7 229 78.2
Cpa.g.sc1441.1 Carica papaya HOM05D005018 ORTHO05D006786 9.3e-83 312.4 172 90.1
Haze_25309 Corylus avellana HOM05D005018 ORTHO05D006786 1.2e-69 268.9 161 82.6
SEGI_06865 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 5.1e-57 226.9 162 66.0
SEGI_07875 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 6.7e-57 226.5 214 56.1
Cc02_g29450 Coffea canephora HOM05D005018 ORTHO05D006786 3.7e-55 220.7 205 65.9
Haze_25306 Corylus avellana HOM05D005018 ORTHO05D000965 1.5e-48 198.7 114 89.5
Oeu026684.1 Olea europaea HOM05D005018 ORTHO05D006786 1.7e-44 185.3 253 48.6
Ca_28668_v3 Cicer arietinum L. HOM05D005018 ORTHO05D006786 2.3e-41 174.9 186 47.8
SMO139G0025 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 1.1e-40 172.6 263 42.6
Zm00001eb132400 Zea mays HOM05D005018 ORTHO05D006786 3.7e-39 167.5 105 77.1
Zm00001eb292630 Zea mays HOM05D005018 ORTHO05D006786 1.5e-35 155.6 112 67.0
SMO157G0012 Selaginella moellendorffii HOM05D005018 ORTHO05D023562 2.5e-35 154.8 106 71.7
Zm00001eb074000 Zea mays HOM05D005018 ORTHO05D006786 1.8e-33 148.7 95 73.7
Zm00001eb319120 Zea mays HOM05D005018 ORTHO05D006786 1.2e-32 146.0 83 85.5
Lj2A615T20 Lonicera japonica HOM05D005018 ORTHO05D006786 1.5e-32 145.6 73 93.2
Haze_18314 Corylus avellana HOM05D005018 ORTHO05D006786 1.8e-30 138.7 139 54.7
Lsat_1_v5_gn_8_7740 Lactuca sativa HOM05D005018 ORTHO05D006786 2.4e-30 138.3 71 83.1
Cpa.g.sc1441.2 Carica papaya HOM05D005018 ORTHO05D006786 1.7e-28 132.1 93 71.0
CDE08G0903 Ceratophyllum demersum HOM05D005018 ORTHO05D006786 7.2e-27 126.7 90 71.1
Ah.06g190940 Amaranthus hybridus HOM05D005018 ORTHO05D006786 2.3e-25 121.7 87 67.8
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 1.1e-19 102.8 61 75.4
HanXRQChr09g0246051 Helianthus annuus HOM05D005018 ORTHO05D006171 8.3e-15 86.7 47 78.7
HanXRQChr10g0278491 Helianthus annuus HOM05D005018 ORTHO05D006786 2.0e-13 82.0 48 77.1
C09p47090 Brassica napus HOM05D036241 ORTHO05D032846 3.5e-13 81.3 77 57.1
SEGI_26662 Sequoiadendron giganteum HOM05D005018 ORTHO05D006786 7.8e-13 80.1 42 88.1


User provided reference genes

Program Settings