Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 2248.8 1139 100.0
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1954.9 1139 88.0
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1785.4 1139 79.5
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1697.2 1141 75.9
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1685.6 1141 75.6
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1669.4 1160 74.3
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1668.3 1160 74.2
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1620.5 1141 72.2
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1614.4 1141 71.8
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1610.5 1141 71.7
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1603.2 1141 71.7
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1602.0 1141 71.3
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1593.6 1143 71.1
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1587.0 1138 71.6
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1582.4 1143 70.3
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1578.1 1141 70.6
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1572.0 1143 70.2
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1571.2 1143 70.6
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1571.2 1141 70.1
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1567.7 1140 70.1
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1565.8 1141 70.0
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1563.5 1141 70.2
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1560.8 1140 70.4
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1556.2 1179 67.8
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1554.7 1151 71.1
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1548.1 1143 69.0
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1535.4 1141 68.5
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1530.8 1142 67.3
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1530.8 1141 69.9
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1529.6 1140 68.6
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1521.1 1141 69.1
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1518.8 1141 69.2
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1511.1 1141 68.5
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1508.8 1140 68.1
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1507.7 1148 67.4
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1506.1 1148 67.3
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1504.6 1141 67.7
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1504.2 1148 67.2
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1500.7 1126 69.5
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1494.2 1147 67.0
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1491.9 1145 67.6
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1490.7 1232 63.6
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1484.2 1144 66.5
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1482.2 1141 66.2
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1480.7 1142 66.2
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1477.6 1141 66.1
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1476.1 1141 66.3
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1475.3 1144 66.3
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1471.8 1125 66.7
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1469.9 1140 66.1
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1466.8 1141 65.8
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1462.6 1142 64.8
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1461.8 1142 65.5
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1461.4 1142 65.5
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1457.2 1141 65.1
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1455.7 1140 65.0
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1453.7 1144 66.0
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1452.6 1140 65.5
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1452.6 1046 70.8
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1444.9 1140 65.7
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1444.9 1131 65.4
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1443.7 1143 65.1
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1441.8 1140 65.0
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1441.0 1141 65.2
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1436.8 1139 64.9
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1436.4 1138 65.2
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1434.9 1139 64.8
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1431.4 1162 64.5
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1431.0 1147 64.8
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1430.2 1063 69.1
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1429.8 1140 65.6
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1428.7 1218 62.5
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1427.2 1140 65.4
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1424.8 1140 64.2
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1419.8 1319 58.0
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1412.9 1141 64.0
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1410.2 1143 64.0
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1407.5 1141 63.3
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1406.3 1147 63.0
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1402.1 1142 62.7
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1397.9 1148 63.7
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1365.1 1140 63.0
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1356.3 1151 61.4
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1355.1 1146 61.1
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1354.7 1033 67.9
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1351.7 1151 61.3
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1263.4 941 68.7
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1260.7 1139 57.8
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1238.0 865 73.4
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1235.7 932 68.1
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1213.4 937 66.6
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1115.5 845 66.3
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 7.0e-311 1070.8 848 65.7
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 3.4e-310 1068.5 1159 50.6
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 9.4e-308 1060.4 1045 55.5
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 1.5e-292 1010.0 1155 47.4
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 6.8e-282 974.5 1158 47.1
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 2.4e-263 912.9 836 57.9
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 1.9e-255 886.7 1037 51.0
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 5.4e-255 885.2 687 65.9
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 3.5e-230 802.7 714 58.5
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 4.3e-228 795.8 572 68.9
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 9.0e-226 788.1 573 69.3
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 1.5e-209 734.2 478 74.3
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 2.6e-209 733.4 478 74.1
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 3.2e-207 726.5 481 73.8
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 6.7e-205 718.8 493 71.2
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 5.7e-204 715.7 484 71.3
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 6.3e-203 712.2 758 52.2
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.8e-202 710.7 478 71.8
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 3.4e-201 706.4 508 68.1
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 5.9e-201 705.7 484 71.1
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 2.8e-195 686.8 478 70.7
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 7.7e-193 678.7 480 68.8
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 1.8e-189 667.5 480 68.1
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 5.3e-186 656.0 478 68.4
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 4.5e-169 599.7 477 63.9
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 1.8e-165 587.8 486 62.1
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 3.4e-164 583.6 459 63.8
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 1.4e-162 578.2 487 60.6
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 3.3e-159 567.0 431 67.3
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 6.2e-150 536.2 394 68.0
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 4.4e-148 530.0 435 62.3
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 3.7e-147 526.9 643 47.4
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 4.1e-146 523.5 394 65.7
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 5.4e-130 469.9 1196 30.6
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 7.4e-119 433.0 295 72.5
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 1.5e-111 408.7 267 76.0
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 1.4e-109 402.1 314 65.6
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.5e-105 387.5 299 67.2
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.8e-101 375.2 241 78.0
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 1.1e-98 365.9 294 65.3
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 1.0e-96 359.4 264 71.2
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 3.0e-96 357.8 266 68.4
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 9.7e-95 352.8 348 54.3
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 1.5e-71 275.8 156 84.0
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 3.5e-60 238.0 210 57.6
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 6.6e-59 233.8 205 58.5
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 1.2e-57 229.6 317 41.3
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 1.6e-44 186.0 110 86.4
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 5.0e-43 181.0 168 60.7
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 1.9e-42 179.1 124 66.1
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 7.5e-39 167.2 182 52.7
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.7e-38 166.0 183 47.0
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 2.2e-38 165.6 97 86.6
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 4.6e-36 157.9 186 52.2
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 4.0e-32 144.8 105 67.6
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 1.2e-31 143.3 137 51.1
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 2.6e-31 142.1 96 71.9
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 3.4e-31 141.7 137 51.8
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 6.4e-30 137.5 83 75.9
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 7.1e-29 134.0 96 68.8
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 2.6e-23 115.5 55 96.4
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 7.6e-23 114.0 75 74.7
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 2.9e-22 112.1 66 75.8
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 6.2e-17 94.4 61 75.4
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 6.2e-17 94.4 97 49.5
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 4.0e-16 91.7 76 57.9
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 2.0e-15 89.4 83 49.4
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 9.9e-15 87.0 79 59.5
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 2.2e-14 85.9 58 65.5
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 1.1e-13 83.6 56 64.3
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 9.3e-13 80.5 73 58.9
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 3.9e-11 75.1 53 71.7
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 3.3e-10 72.0 41 78.0
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 4.3e-10 71.6 45 71.1
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 3.6e-09 68.6 73 52.1
MBI12_g24383_MAGBIO Magnolia biondii HOM05D000791 ORTHO05D004199 4.5e-07 61.6 36 77.8
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 5.8e-07 61.2 49 63.3
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 1.7e-06 59.7 44 68.2
CDE05G2763 Ceratophyllum demersum HOM05D004198 ORTHO05D130465 2.9e-06 58.9 82 37.8


User provided reference genes

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