Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD02G1034000 Malus domestica HOM05D004156 ORTHO05D005259 2.7e-178 628.6 332 100.0
MD15G1174800 Malus domestica HOM05D004156 ORTHO05D005259 3.2e-171 605.1 332 95.8
Prupe.7G241100 Prunus persica HOM05D004156 ORTHO05D005259 5.4e-155 551.2 335 86.0
FAN19G1880 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.2e-139 498.4 315 81.3
FAN28G2743 Fragaria x ananassa HOM05D004156 ORTHO05D005259 4.2e-139 498.4 315 81.3
FvH4_1g03500 Fragaria vesca HOM05D004156 ORTHO05D005259 7.1e-139 497.7 315 81.3
FAN26G1774 Fragaria x ananassa HOM05D004156 ORTHO05D005259 2.1e-138 496.1 315 81.0
FAN23G0721 Fragaria x ananassa HOM05D004156 ORTHO05D005259 3.5e-138 495.4 315 81.0
RcHm_v2.0_Chr2g0088711 Rosa chinensis HOM05D004156 ORTHO05D005259 1.3e-132 476.9 313 78.9
Haze_24995 Corylus avellana HOM05D004156 ORTHO05D005259 1.2e-130 470.3 302 79.5
GSVIVG01027072001 Vitis vinifera HOM05D004156 ORTHO05D005259 8.7e-129 464.2 323 76.2
Cfa002719 Carpinus fangiana HOM05D004156 ORTHO05D005259 1.1e-128 463.8 302 78.5
CsaV3_1G042300 Cucumis sativus L. HOM05D004156 ORTHO05D005259 1.1e-128 463.8 334 73.7
CiPaw.07G232300 Carya illinoinensis HOM05D004156 ORTHO05D005259 4.3e-128 461.8 316 77.8
GSVIVG01027422001 Vitis vinifera HOM05D004156 ORTHO05D005259 6.2e-127 458.0 306 77.1
Gohir.D07G039500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 8.1e-127 457.6 324 74.1
Dinv36535 Davidia involucrata HOM05D004156 ORTHO05D003047 1.1e-126 457.2 319 74.3
Gorai.001G041600 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.1e-126 457.2 324 74.1
Gohir.A07G035500 Gossypium hirsutum HOM05D004156 ORTHO05D005259 2.4e-126 456.1 324 73.8
VMungo1309G1108 Vigna mungo HOM05D004156 ORTHO05D005259 4.0e-126 455.3 323 74.9
Nn8g39422 Nelumbo nucifera HOM05D004156 ORTHO05D005259 6.9e-126 454.5 316 75.3
ClCG03G013780 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.5e-125 453.4 336 72.3
Duzib150G1332 Durio zibethinus HOM05D004156 ORTHO05D005259 1.3e-124 450.3 337 71.2
Phvul.003G163900 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.3e-124 450.3 330 72.1
Gorai.009G018400 Gossypium raimondii HOM05D004156 ORTHO05D005259 1.7e-124 449.9 326 73.9
Thecc.09G124800 Theobroma cacao HOM05D004156 ORTHO05D005259 1.7e-124 449.9 324 73.1
Eucgr.E02428 Eucalyptus grandis HOM05D004156 ORTHO05D005259 2.2e-124 449.5 310 74.2
Gohir.A05G017100 Gossypium hirsutum HOM05D004156 ORTHO05D005259 4.9e-124 448.4 324 73.1
COL.COLO4_05789 Corchorus olitorius HOM05D004156 ORTHO05D005259 6.4e-124 448.0 321 72.9
Phvul.009G258100 Phaseolus vulgaris HOM05D004156 ORTHO05D005259 1.1e-123 447.2 333 70.9
PGR102G0554 Punica granatum HOM05D004156 ORTHO05D005259 1.9e-123 446.4 308 74.7
Glyma.13G167900 Glycine max HOM05D004156 ORTHO05D005259 2.4e-123 446.0 318 73.3
CANSAT11G1878 Cannabis sativa HOM05D004156 ORTHO05D005259 5.5e-123 444.9 323 73.1
MELO3C015663.2 Cucumis melo HOM05D004156 ORTHO05D005259 1.6e-122 443.4 335 71.0
VMungo1215G1862 Vigna mungo HOM05D004156 ORTHO05D005259 2.7e-122 442.6 332 70.8
TAR625G0545 Trochodendron aralioides HOM05D004156 ORTHO05D005259 1.0e-121 440.7 311 75.9
Sed0021765 Sechium edule HOM05D004156 ORTHO05D005259 3.0e-121 439.1 322 73.6
HanXRQChr06g0181321 Helianthus annuus HOM05D004156 ORTHO05D005259 3.9e-121 438.7 322 71.1
Nitab4.5_0005139g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 6.7e-121 438.0 323 72.4
Hma1.2p1_0018F.1_g012530 Hydrangea macrophylla HOM05D004156 ORTHO05D005259 1.5e-120 436.8 319 72.4
Manes.14G131500 Manihot esculenta HOM05D004156 ORTHO05D005259 3.3e-120 435.6 329 70.2
Nitab4.5_0010819g0030 Nicotiana tabacum HOM05D004156 ORTHO05D005259 3.3e-120 435.6 322 72.7
arahy.Tifrunner.gnm1.ann1.KP5LKI Arachis hypogaea HOM05D004156 ORTHO05D005259 5.6e-120 434.9 332 70.2
Solyc12g006550.2 Solanum lycopersicum HOM05D004156 ORTHO05D005259 5.6e-120 434.9 322 70.5
Ciclev10008881m.g Citrus clementina HOM05D004156 ORTHO05D005259 7.4e-120 434.5 316 72.8
Lalb_Chr12g0197861 Lupinus albus HOM05D004156 ORTHO05D005259 7.4e-120 434.5 327 69.1
Sopen12g002500 Solanum pennellii HOM05D004156 ORTHO05D005259 1.6e-119 433.3 322 70.2
Lj7C630T1 Lonicera japonica HOM05D004156 ORTHO05D005259 2.8e-119 432.6 330 71.5
PGSC0003DMG400018964 Solanum tuberosum HOM05D004156 ORTHO05D005259 3.7e-119 432.2 322 69.9
THA.LOC104806527 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 1.1e-118 430.6 320 70.9
Actinidia35394 Actinidia chinensis HOM05D004156 ORTHO05D005259 1.4e-118 430.3 290 74.8
Aqoxy2G02204 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 1.8e-118 429.9 288 75.3
Glyma.17G115500 Glycine max HOM05D004156 ORTHO05D005259 1.8e-118 429.9 315 71.1
Lj4g0019515 Lotus japonicus HOM05D004156 ORTHO05D005259 2.4e-118 429.5 318 70.4
Psat2g006920 Pisum sativum HOM05D004156 ORTHO05D005259 5.3e-118 428.3 318 71.4
Sed0019954 Sechium edule HOM05D004156 ORTHO05D005259 1.2e-117 427.2 335 68.4
Aqoxy6G01405 Aquilegia oxysepala HOM05D004156 ORTHO05D005259 2.0e-117 426.4 287 75.6
PSO210G0875 Papaver somniferum HOM05D004156 ORTHO05D005259 2.0e-117 426.4 314 71.0
THA.LOC104805714 Tarenaya hassleriana HOM05D004156 ORTHO05D005259 3.4e-117 425.6 315 71.1
TWI32G0547 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 4.5e-117 425.2 346 66.5
Potri.005G231000 Populus trichocarpa HOM05D004156 ORTHO05D005259 5.8e-117 424.9 295 73.9
CAN.G594.20 Capsicum annuum HOM05D004156 ORTHO05D005259 1.3e-116 423.7 304 71.4
Cpa.g.sc1199.3 Carica papaya HOM05D004156 ORTHO05D005259 1.3e-116 423.7 300 73.7
Lsat_1_v5_gn_9_120581 Lactuca sativa HOM05D004156 ORTHO05D005259 1.3e-116 423.7 328 67.4
ClCG06G011000 Citrullus lanatus HOM05D004156 ORTHO05D005259 1.7e-116 423.3 330 68.8
MSTRG.12622 Avicennia marina HOM05D004156 ORTHO05D005259 2.2e-116 422.9 321 69.2
Aa31LG5G23180 Aethionema arabicum HOM05D004156 ORTHO05D005259 2.9e-116 422.5 307 70.4
QL02p088083 Quercus lobata HOM05D004156 ORTHO05D005259 3.8e-116 422.2 320 71.2
Cc06_g08630 Coffea canephora HOM05D004156 ORTHO05D005259 6.5e-116 421.4 322 70.2
arahy.Tifrunner.gnm1.ann1.FDU8BE Arachis hypogaea HOM05D004156 ORTHO05D005259 8.4e-116 421.0 333 68.2
PSO832G0272 Papaver somniferum HOM05D004156 ORTHO05D005259 1.9e-115 419.9 314 70.4
CSS0011304 Camellia sinensis var. sinensis HOM05D004156 ORTHO05D005259 2.5e-115 419.5 323 69.3
Atru.chr7.278 Acer truncatum HOM05D004156 ORTHO05D005259 6.0e-114 414.8 327 68.8
Sc14g0000240 Simmondsia chinensis HOM05D004156 ORTHO05D005259 6.0e-114 414.8 283 72.8
TPR.G25243 Trifolium pratense HOM05D004156 ORTHO05D005259 1.3e-113 413.7 317 69.7
MBI01_g37801_MAGBIO Magnolia biondii HOM05D004156 ORTHO05D005259 1.8e-113 413.3 313 70.3
Peaxi162Scf00274g00336 Petunia axillaris HOM05D004156 ORTHO05D005259 1.8e-113 413.3 315 68.9
HanXRQChr07g0187411 Helianthus annuus HOM05D004156 ORTHO05D005259 2.3e-113 412.9 322 68.3
ECA247G0053 Erigeron canadensis HOM05D004156 ORTHO05D005259 3.9e-113 412.1 335 65.7
Medtr2g008870 Medicago truncatula HOM05D004156 ORTHO05D005259 3.9e-113 412.1 331 66.2
DCAR_017823 Daucus carota HOM05D004156 ORTHO05D005259 5.1e-113 411.8 351 66.7
A03p21000 Brassica napus HOM05D004156 ORTHO05D005259 6.7e-113 411.4 305 69.5
BraA03t11339Z Brassica rapa HOM05D004156 ORTHO05D005259 6.7e-113 411.4 305 69.5
AL4G34970 Arabidopsis lyrata HOM05D004156 ORTHO05D005259 8.7e-113 411.0 311 69.1
DCAR_014878 Daucus carota HOM05D004156 ORTHO05D005259 1.5e-112 410.2 324 69.8
Ah.14g087130 Amaranthus hybridus HOM05D004156 ORTHO05D005259 1.9e-112 409.8 284 72.9
Thhalv10016958m.g Eutrema salsugineum HOM05D004156 ORTHO05D005259 1.9e-112 409.8 310 69.7
Sabra05G0178400 Salix brachista HOM05D004156 ORTHO05D000382 1.9e-112 409.8 338 66.0
BcaNung06518 Brassica carinata HOM05D004156 ORTHO05D005259 2.5e-112 409.5 305 69.2
Rhsim03G0247600 Rhododendron simsii HOM05D004156 ORTHO05D005259 5.7e-112 408.3 393 59.5
Sp4g20310 Schrenkiella parvula HOM05D004156 ORTHO05D005259 5.7e-112 408.3 316 67.7
AT2G37990 Arabidopsis thaliana HOM05D004156 ORTHO05D005259 2.2e-111 406.4 309 68.6
Carub.0004s1996 Capsella rubella HOM05D004156 ORTHO05D005259 2.2e-111 406.4 310 67.7
Lalb_Chr07g0178901 Lupinus albus HOM05D004156 ORTHO05D005259 2.8e-111 406.0 302 71.2
EL10Ac8g18639 Beta vulgaris HOM05D004156 ORTHO05D005259 1.8e-110 403.3 323 67.5
BcaC01g05579 Brassica carinata HOM05D004156 ORTHO05D005259 1.8e-110 403.3 305 68.2
BolC3t14862H Brassica oleracea HOM05D004156 ORTHO05D005259 1.8e-110 403.3 305 68.2
ATR0730G095 Amborella trichopoda HOM05D004156 ORTHO05D005259 5.3e-110 401.7 313 66.5
vmacro22115 Vaccinium macrocarpon HOM05D004156 ORTHO05D005259 5.3e-110 401.7 324 67.9
A04p29140 Brassica napus HOM05D004156 ORTHO05D005259 6.9e-110 401.4 305 68.5
CARHR132550 Cardamine hirsuta HOM05D004156 ORTHO05D005259 1.5e-109 400.2 311 67.5
BraA04t18383Z Brassica rapa HOM05D004156 ORTHO05D005259 5.9e-109 398.3 305 68.2
TWI34G0257 Tripterygium wilfordii HOM05D004156 ORTHO05D005259 7.6e-109 397.9 379 59.1
SGA_v2.0_scaffold35G14133 Striga asiatica HOM05D004156 ORTHO05D005259 2.2e-108 396.4 322 66.1
C04p66350 Brassica napus HOM05D004156 ORTHO05D005259 2.9e-108 396.0 305 67.9
BcaC02g12926 Brassica carinata HOM05D004156 ORTHO05D005259 3.8e-108 395.6 305 67.5
BcaNung06338 Brassica carinata HOM05D004156 ORTHO05D005259 8.5e-108 394.4 305 67.9
CDE04G1546 Ceratophyllum demersum HOM05D004156 ORTHO05D005259 1.1e-107 394.0 287 70.0
Oeu055874.1 Olea europaea HOM05D004156 ORTHO05D005259 1.2e-106 390.6 311 67.5
BolC4t28140H Brassica oleracea HOM05D004156 ORTHO05D005259 3.6e-106 389.0 310 66.8
HPP92_015694 Vanilla planifolia HOM05D004156 ORTHO05D005259 3.6e-106 389.0 315 66.3
CiPaw.15G031800 Carya illinoinensis HOM05D004156 ORTHO05D005259 4.6e-106 388.7 295 70.5
BcaB01g03735 Brassica carinata HOM05D004156 ORTHO05D005259 7.9e-106 387.9 323 64.1
AUR62013371 Chenopodium quinoa HOM05D004156 ORTHO05D005259 1.8e-105 386.7 286 68.2
Gohir.D05G018000 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.8e-105 386.7 250 76.8
unitig_21.g20656 Utricularia gibba HOM05D004156 ORTHO05D005259 1.7e-103 380.2 321 63.6
AUR62011120 Chenopodium quinoa HOM05D004156 ORTHO05D005259 4.8e-103 378.6 296 65.9
SGA_v2.0_scaffold224G42948 Striga asiatica HOM05D004156 ORTHO05D005259 6.3e-103 378.3 341 61.9
Os04g0685100 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 1.0e-100 370.9 315 62.5
Migut.L01695 Erythranthe guttata HOM05D004156 ORTHO05D005259 2.2e-100 369.8 330 61.5
Zm00001eb122260 Zea mays HOM05D004156 ORTHO05D005259 3.2e-99 365.9 316 61.7
SalBow5G0058 Salvia bowleyana HOM05D004156 ORTHO05D005259 1.6e-98 363.6 402 51.2
Hund09135 Selenicereus undatus HOM05D004156 ORTHO05D005259 1.6e-98 363.6 344 61.0
Gohir.D08G025232 Gossypium hirsutum HOM05D004156 ORTHO05D005259 1.4e-97 360.5 383 56.7
Ca_00137_v3 Cicer arietinum L. HOM05D004156 ORTHO05D000741 3.4e-93 345.9 336 58.9
Actinidia26780 Actinidia chinensis HOM05D004156 ORTHO05D005259 7.7e-93 344.7 329 60.5
Atru.chr7.1220 Acer truncatum HOM05D004156 ORTHO05D005259 1.5e-88 330.5 313 58.8
SEGI_31652 Sequoiadendron giganteum HOM05D004156 ORTHO05D005259 2.6e-88 329.7 320 55.3
Sc18g0000640 Simmondsia chinensis HOM05D004156 ORTHO05D005259 1.7e-84 317.0 286 58.0
Zm00001eb337040 Zea mays HOM05D004156 ORTHO05D005259 3.2e-83 312.8 314 56.1
Mapoly0036s0028 Marchantia polymorpha HOM05D004156 ORTHO05D005259 6.1e-82 308.5 317 54.6
C03p24730 Brassica napus HOM05D004156 ORTHO05D005259 2.3e-81 306.6 305 58.0
A05p08010 Brassica napus HOM05D004156 ORTHO05D005259 3.3e-80 302.8 309 57.3
BraA05t19767Z Brassica rapa HOM05D004156 ORTHO05D005259 9.7e-80 301.2 310 56.1
AagrBONN_evm.TU.Sc2ySwM_368.2845 Anthoceros agrestis HOM05D004156 ORTHO05D005259 3.7e-79 299.3 321 52.0
Pp3c3_32550 Physcomitrium patens HOM05D004156 ORTHO05D005259 7.5e-72 275.0 334 50.3
CBR_g18768 Chara braunii HOM05D004156 ORTHO05D005259 9.8e-72 274.6 315 51.4
SMO351G0347 Selaginella moellendorffii HOM05D004156 ORTHO05D005259 3.7e-71 272.7 252 56.0
BolC4t22574H Brassica oleracea HOM05D004156 ORTHO05D005259 1.1e-67 261.2 267 55.4
TAR626G0974 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.3e-65 253.4 172 74.4
BcaB02g09228 Brassica carinata HOM05D004156 ORTHO05D005259 5.2e-65 252.3 216 65.3
Oeu045226.1 Olea europaea HOM05D004156 ORTHO05D005259 1.2e-64 251.1 319 51.1
BcaC02g11942 Brassica carinata HOM05D004156 ORTHO05D005259 5.4e-62 242.3 252 57.1
HanXRQChr06g0181331 Helianthus annuus HOM05D004156 ORTHO05D005259 4.5e-61 239.2 167 73.1
C04p09670 Brassica napus HOM05D004156 ORTHO05D005259 9.5e-59 231.5 233 57.5
C03p24670 Brassica napus HOM05D004156 ORTHO05D005259 2.6e-56 223.4 149 70.5
Gohir.A08G014600 Gossypium hirsutum HOM05D004156 ORTHO05D005259 5.6e-51 205.7 135 78.5
BcaC02g11940 Brassica carinata HOM05D004156 ORTHO05D005259 1.6e-50 204.1 171 67.3
Nitab4.5_0002556g0050 Nicotiana tabacum HOM05D004156 ORTHO05D005259 2.1e-50 203.8 189 65.6
Cre01.g020950 Chlamydomonas reinhardtii HOM05D004156 ORTHO05D005259 1.6e-42 177.6 299 38.8
TAR383G1033 Trochodendron aralioides HOM05D004156 ORTHO05D005259 3.4e-40 169.9 161 62.7
Os06g0142050 Oryza sativa ssp. japonica HOM05D004156 ORTHO05D005259 5.1e-36 156.0 155 59.4
Actinidia37158 Actinidia chinensis HOM05D004156 ORTHO05D005259 2.8e-34 150.2 118 72.0
BcaC09g49789 Brassica carinata HOM05D004156 ORTHO05D005259 2.0e-32 144.1 134 62.7
PRCOL_00002162 Prasinoderma coloniale HOM05D004156 ORTHO05D005259 1.7e-31 141.0 366 34.7
MCO03G226 Micromonas commoda HOM05D004156 ORTHO05D005259 2.4e-30 137.1 307 32.6
BcaNung06017 Brassica carinata HOM05D004156 ORTHO05D005259 2.6e-24 117.1 74 71.6
Nn8g39426 Nelumbo nucifera HOM05D004156 ORTHO05D005259 1.9e-22 110.9 91 62.6
AagrBONN_evm.TU.Sc2ySwM_228.5043 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.3e-20 104.8 90 54.4
C01p32910 Brassica napus HOM05D004156 ORTHO05D005259 7.3e-19 99.0 99 57.6
AagrBONN_evm.TU.Sc2ySwM_228.5042 Anthoceros agrestis HOM05D004156 ORTHO05D005259 1.6e-18 97.8 89 56.2
Rhsim11G0147700 Rhododendron simsii HOM05D004156 ORTHO05D338749 4.2e-14 83.2 61 68.9
Zm00001eb433790 Zea mays HOM05D003078 ORTHO05D446193 1.3e-10 71.6 63 52.4
Zm00001eb060690 Zea mays HOM05D004156 ORTHO05D005259 1.8e-09 67.8 52 57.7
TAR626G1412 Trochodendron aralioides HOM05D004156 ORTHO05D005259 2.4e-09 67.4 107 45.8
Psat0s2088g0120 Pisum sativum HOM05D001944 ORTHO05D002405 2.0e-08 64.3 38 86.8
TAR636G0452 Trochodendron aralioides HOM05D000809 ORTHO05D007735 1.3e-07 61.6 43 67.4
Glyma.20G228801 Glycine max HOM05D004156 ORTHO05D211242 1.4e-06 58.2 89 43.8
Actinidia26746 Actinidia chinensis HOM05D004156 ORTHO05D054118 7.1e-06 55.8 42 61.9


User provided reference genes

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