Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD01G1123800 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 2548.1 1318 100.0
MD07G1193500 Malus domestica HOM05D006356 ORTHO05D007903 0.0e+00 2390.1 1321 92.1
Prupe.2G231100 Prunus persica HOM05D006356 ORTHO05D007903 0.0e+00 2279.6 1322 87.1
RcHm_v2.0_Chr1g0366221 Rosa chinensis HOM05D006356 ORTHO05D007903 0.0e+00 2114.0 1324 80.6
FvH4_7g21920 Fragaria vesca HOM05D006356 ORTHO05D007903 0.0e+00 2100.1 1326 78.9
FAN01G2014 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2094.7 1326 78.7
FAN06G1346 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2092.4 1326 78.7
FAN03G2412 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2092.0 1326 78.5
FAN10G4053 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 2079.3 1326 78.1
FAN06G1693 Fragaria x ananassa HOM05D006356 ORTHO05D007903 0.0e+00 1966.0 1244 78.2
Haze_17035 Corylus avellana HOM05D006356 ORTHO05D007903 0.0e+00 1884.8 1327 71.2
Cfa001508 Carpinus fangiana HOM05D006356 ORTHO05D007903 0.0e+00 1860.9 1327 70.3
CANSAT56G2020 Cannabis sativa HOM05D006356 ORTHO05D007903 0.0e+00 1851.3 1323 71.4
QL08p059009 Quercus lobata HOM05D006356 ORTHO05D007903 0.0e+00 1842.8 1322 70.7
Gorai.011G255900 Gossypium raimondii HOM05D006356 ORTHO05D007903 0.0e+00 1796.6 1329 69.9
Potri.010G208400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1796.6 1326 67.9
Potri.008G052400 Populus trichocarpa HOM05D006356 ORTHO05D007903 0.0e+00 1793.1 1326 68.3
Thecc.10G046600 Theobroma cacao HOM05D006356 ORTHO05D007903 0.0e+00 1793.1 1329 69.1
Ciclev10030528m.g Citrus clementina HOM05D006356 ORTHO05D007903 0.0e+00 1791.9 1327 69.1
Gohir.D10G224900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1791.9 1327 69.3
Duzib106G0492 Durio zibethinus HOM05D006356 ORTHO05D007903 0.0e+00 1788.1 1327 68.4
Sabra08G0037700 Salix brachista HOM05D006356 ORTHO05D007903 0.0e+00 1786.5 1326 68.0
CSS0015977 Camellia sinensis var. sinensis HOM05D006356 ORTHO05D007903 0.0e+00 1767.3 1330 66.8
TWI38G0752 Tripterygium wilfordii HOM05D006356 ORTHO05D007903 0.0e+00 1763.0 1328 67.8
Actinidia07718 Actinidia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1753.4 1331 66.4
TAR369G0783 Trochodendron aralioides HOM05D006356 ORTHO05D007903 0.0e+00 1738.8 1332 65.8
Atru.BG.253.p Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1729.1 1250 71.0
Rhsim09G0107200 Rhododendron simsii HOM05D006356 ORTHO05D007903 0.0e+00 1719.9 1328 64.9
LjContig00357g0007551 Lotus japonicus HOM05D006356 ORTHO05D007903 0.0e+00 1717.6 1321 65.0
arahy.Tifrunner.gnm1.ann1.C821YF Arachis hypogaea HOM05D006356 ORTHO05D007903 0.0e+00 1703.7 1321 65.0
ClCG09G020060 Citrullus lanatus HOM05D006356 ORTHO05D007903 0.0e+00 1702.2 1322 65.8
Eucgr.J00045 Eucalyptus grandis HOM05D006356 ORTHO05D007903 0.0e+00 1700.6 1326 66.9
Gohir.A10G215900 Gossypium hirsutum HOM05D006356 ORTHO05D007903 0.0e+00 1696.8 1245 70.0
PGR044G1537 Punica granatum HOM05D006356 ORTHO05D007903 0.0e+00 1692.6 1325 64.2
Lj8C87G2 Lonicera japonica HOM05D006356 ORTHO05D007903 0.0e+00 1688.3 1328 64.8
MELO3C025450.2 Cucumis melo HOM05D006356 ORTHO05D007903 0.0e+00 1687.5 1328 64.8
Lalb_Chr21g0307391 Lupinus albus HOM05D006356 ORTHO05D007903 0.0e+00 1677.1 1327 63.7
TPR.G13985 Trifolium pratense HOM05D006356 ORTHO05D007903 0.0e+00 1674.4 1326 65.6
Medtr1g115300 Medicago truncatula HOM05D006356 ORTHO05D007903 0.0e+00 1672.5 1326 64.0
Psat2g006960 Pisum sativum HOM05D006356 ORTHO05D007903 0.0e+00 1670.6 1327 63.6
Glyma.10G289800 Glycine max HOM05D006356 ORTHO05D007903 0.0e+00 1657.5 1326 63.9
Ca_11290_v3 Cicer arietinum L. HOM05D006356 ORTHO05D007903 0.0e+00 1654.0 1272 66.8
VMungo0720G2582 Vigna mungo HOM05D006356 ORTHO05D007903 0.0e+00 1650.2 1323 62.6
vmacro07156 Vaccinium macrocarpon HOM05D006356 ORTHO05D007903 0.0e+00 1633.2 1277 63.7
Nn2g12928 Nelumbo nucifera HOM05D006356 ORTHO05D007903 0.0e+00 1623.2 1339 60.5
MBI14_g24317_MAGBIO Magnolia biondii HOM05D006356 ORTHO05D007903 0.0e+00 1622.1 1337 61.6
PGSC0003DMG400023520 Solanum tuberosum HOM05D006356 ORTHO05D007903 0.0e+00 1618.2 1323 62.4
Solyc05g054630.4 Solanum lycopersicum HOM05D006356 ORTHO05D007903 0.0e+00 1617.1 1322 62.1
GSVIVG01016590001 Vitis vinifera HOM05D006356 ORTHO05D007903 0.0e+00 1614.0 1322 63.3
AUR62040952 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1610.5 1329 60.8
CAN.G1013.4 Capsicum annuum HOM05D006356 ORTHO05D007903 0.0e+00 1608.2 1324 62.1
Ah.16g107390 Amaranthus hybridus HOM05D006356 ORTHO05D007903 0.0e+00 1606.3 1326 61.2
Cc02_g08190 Coffea canephora HOM05D006356 ORTHO05D007903 0.0e+00 1603.6 1324 61.3
Peaxi162Scf00015g01616 Petunia axillaris HOM05D006356 ORTHO05D007903 0.0e+00 1603.2 1321 61.8
EL10Ac2g03426 Beta vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1601.6 1333 60.0
THA.LOC104799353 Tarenaya hassleriana HOM05D006356 ORTHO05D007903 0.0e+00 1600.5 1320 61.1
PSO675G9381 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1598.2 1332 60.6
Nitab4.5_0001831g0090 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1591.6 1321 61.9
Nitab4.5_0006342g0010 Nicotiana tabacum HOM05D006356 ORTHO05D007903 0.0e+00 1591.2 1347 60.6
DCAR_027666 Daucus carota HOM05D006356 ORTHO05D007903 0.0e+00 1587.8 1322 60.8
Sc20g0002610 Simmondsia chinensis HOM05D006356 ORTHO05D007903 0.0e+00 1580.5 1330 60.3
PSO541G4186 Papaver somniferum HOM05D006356 ORTHO05D007903 0.0e+00 1578.1 1341 59.5
Aqoxy4G02989 Aquilegia oxysepala HOM05D006356 ORTHO05D007903 0.0e+00 1564.3 1341 59.5
Atru.chr12.503 Acer truncatum HOM05D006356 ORTHO05D007903 0.0e+00 1554.3 1096 72.4
Sopen05g033110 Solanum pennellii HOM05D006356 ORTHO05D007903 0.0e+00 1552.7 1239 63.0
Hund20019 Selenicereus undatus HOM05D006356 ORTHO05D007903 0.0e+00 1550.0 1272 60.9
AUR62038374 Chenopodium quinoa HOM05D006356 ORTHO05D007903 0.0e+00 1520.4 1177 63.6
Migut.H00419 Erythranthe guttata HOM05D006356 ORTHO05D007903 0.0e+00 1518.1 1321 59.7
Manes.07G113200 Manihot esculenta HOM05D006356 ORTHO05D007903 0.0e+00 1514.2 1100 68.8
AL6G24290 Arabidopsis lyrata HOM05D006356 ORTHO05D007903 0.0e+00 1506.9 1327 58.0
Thhalv10012453m.g Eutrema salsugineum HOM05D006356 ORTHO05D007903 0.0e+00 1504.2 1324 57.9
AT5G13680 Arabidopsis thaliana HOM05D006356 ORTHO05D007903 0.0e+00 1503.8 1324 58.1
BolC9t59188H Brassica oleracea HOM05D006356 ORTHO05D007903 0.0e+00 1498.8 1328 57.8
Sp6g30340 Schrenkiella parvula HOM05D006356 ORTHO05D007903 0.0e+00 1498.8 1324 57.8
C09p63420 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1492.6 1326 57.8
Carub.0006s1184 Capsella rubella HOM05D006356 ORTHO05D007903 0.0e+00 1490.7 1324 57.7
A10p24610 Brassica napus HOM05D006356 ORTHO05D007903 0.0e+00 1490.3 1327 57.6
BraA10t44524Z Brassica rapa HOM05D006356 ORTHO05D007903 0.0e+00 1490.3 1327 57.6
SGA_v2.0_scaffold204G41568 Striga asiatica HOM05D006356 ORTHO05D007903 0.0e+00 1487.2 1323 58.3
Dinv31432 Davidia involucrata HOM05D006356 ORTHO05D007903 0.0e+00 1485.7 1278 62.1
ECA233G4627 Erigeron canadensis HOM05D006356 ORTHO05D007903 0.0e+00 1469.9 1323 58.2
Aa31sc144G30 Aethionema arabicum HOM05D006356 ORTHO05D007903 0.0e+00 1464.5 1352 55.4
Lsat_1_v5_gn_8_16481 Lactuca sativa HOM05D006356 ORTHO05D007903 0.0e+00 1455.7 1323 57.7
CsaV3_5G026400 Cucumis sativus L. HOM05D006356 ORTHO05D007903 0.0e+00 1448.0 1114 65.0
Phvul.007G011700 Phaseolus vulgaris HOM05D006356 ORTHO05D007903 0.0e+00 1448.0 1130 64.2
HanXRQChr08g0220321 Helianthus annuus HOM05D006356 ORTHO05D007903 0.0e+00 1444.5 1319 57.2
Sed0005812 Sechium edule HOM05D006356 ORTHO05D007903 0.0e+00 1423.3 1091 66.1
BcaC04g24267 Brassica carinata HOM05D006356 ORTHO05D007903 0.0e+00 1414.4 1324 55.5
Os07g0563700 Oryza sativa ssp. japonica HOM05D006356 ORTHO05D007903 0.0e+00 1364.7 1341 52.1
Oeu016021.3 Olea europaea HOM05D006356 ORTHO05D007903 0.0e+00 1354.3 1558 48.5
ATR0559G370 Amborella trichopoda HOM05D006356 ORTHO05D007903 0.0e+00 1348.2 1347 55.6
COL.COLO4_14974 Corchorus olitorius HOM05D006356 ORTHO05D007903 0.0e+00 1337.4 1323 55.6
Zm00001eb082380 Zea mays HOM05D006356 ORTHO05D007903 0.0e+00 1330.1 1347 50.7
CARHR199760 Cardamine hirsuta HOM05D006356 ORTHO05D007903 0.0e+00 1320.1 1145 58.3
CiPaw.01G284000 Carya illinoinensis HOM05D006356 ORTHO05D007903 0.0e+00 1312.4 945 69.2
HPP92_012583 Vanilla planifolia HOM05D006356 ORTHO05D007903 0.0e+00 1310.0 1327 52.4
Cpa.g.sc1.373 Carica papaya HOM05D006356 ORTHO05D007903 0.0e+00 1236.1 902 67.3
CDE04G3644 Ceratophyllum demersum HOM05D006356 ORTHO05D007903 0.0e+00 1149.4 1338 48.9
Hma1.2p1_0533F.1_g173660 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 0.0e+00 1105.1 864 65.9
SEGI_26197 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 0.0e+00 1080.5 1249 47.2
Hma1.2p1_0533F.1_g173650 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 1.2e-290 1003.8 756 68.1
Mapoly0015s0194 Marchantia polymorpha HOM05D006356 ORTHO05D007903 4.7e-242 842.4 1371 37.0
unitig_736.g22670 Utricularia gibba HOM05D006356 ORTHO05D007903 6.5e-228 795.4 854 48.2
AagrBONN_evm.TU.Sc2ySwM_362.1673 Anthoceros agrestis HOM05D006356 ORTHO05D007903 7.5e-224 781.9 1199 38.6
Pp3c8_3890 Physcomitrium patens HOM05D006356 ORTHO05D007903 4.5e-221 772.7 1186 38.9
SMO352G0087 Selaginella moellendorffii HOM05D006356 ORTHO05D007903 1.2e-218 764.6 1304 37.0
SEGI_10512 Sequoiadendron giganteum HOM05D006356 ORTHO05D007903 5.4e-198 696.0 807 47.3
CBR_g230 Chara braunii HOM05D006356 ORTHO05D007903 1.2e-149 535.4 1528 29.8
arahy.Tifrunner.gnm1.ann1.1A0WRJ Arachis hypogaea HOM05D006356 ORTHO05D007903 8.5e-135 486.1 377 63.4
unitig_736.g22669 Utricularia gibba HOM05D006356 ORTHO05D007903 2.0e-128 464.9 460 57.0
Cpa.g.sc1.372 Carica papaya HOM05D006356 ORTHO05D007903 1.4e-124 452.2 358 64.2
MCO05G525 Micromonas commoda HOM05D006356 ORTHO05D007903 5.4e-89 334.0 1383 26.3
Actinidia02967 Actinidia chinensis HOM05D006356 ORTHO05D007903 2.7e-88 331.6 254 66.5
Cre08.g372500 Chlamydomonas reinhardtii HOM05D006356 ORTHO05D007903 1.7e-87 328.9 1539 27.7
Psat2g034240 Pisum sativum HOM05D006356 ORTHO05D007903 4.4e-83 314.3 301 54.5
Nn4g26017 Nelumbo nucifera HOM05D006356 ORTHO05D007903 2.7e-80 305.1 247 57.9
TAR225G0003 Trochodendron aralioides HOM05D002467 ORTHO05D003907 6.8e-68 263.8 1106 25.2
Psat0s3149g0040 Pisum sativum HOM05D006356 ORTHO05D007903 5.6e-62 244.2 231 53.2
Psat0s3149g0080 Pisum sativum HOM05D006356 ORTHO05D007903 2.9e-58 231.9 254 48.4
Hma1.2p1_0529F.1_g173120 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 4.3e-54 218.0 196 59.7
PRCOL_00001522 Prasinoderma coloniale HOM05D006356 ORTHO05D007903 1.7e-42 179.5 1222 23.9
Hma1.2p1_0248F.1_g102020 Hydrangea macrophylla HOM05D006356 ORTHO05D007903 4.2e-41 174.9 121 71.9
Psat6g224200 Pisum sativum HOM05D006356 ORTHO05D007903 4.2e-41 174.9 130 68.5
Psat0s4636g0040 Pisum sativum HOM05D006356 ORTHO05D007903 3.3e-38 165.2 121 69.4
Lj5g0016728 Lotus japonicus HOM05D006356 ORTHO05D007903 1.5e-30 139.8 110 66.4
AUR62038375 Chenopodium quinoa HOM05D006356 ORTHO05D007903 1.4e-23 116.7 113 55.8


User provided reference genes

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