Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1163900 Malus domestica HOM05D004739 ORTHO05D005784 4.8e-165 584.3 279 100.0
RcHm_v2.0_Chr4g0410481 Rosa chinensis HOM05D004739 ORTHO05D005784 2.9e-149 531.9 280 90.0
MD09G1250400 Malus domestica HOM05D004739 ORTHO05D005784 3.2e-148 528.5 279 92.8
FvH4_4g12370 Fragaria vesca HOM05D004739 ORTHO05D005784 1.6e-147 526.2 280 88.2
QL06p027729 Quercus lobata HOM05D004739 ORTHO05D005784 1.8e-143 512.7 278 86.0
COL.COLO4_08079 Corchorus olitorius HOM05D004739 ORTHO05D005784 1.2e-142 510.0 280 85.4
FAN07G0434 Fragaria x ananassa HOM05D004739 ORTHO05D005784 2.0e-142 509.2 278 86.7
FAN12G0062 Fragaria x ananassa HOM05D004739 ORTHO05D005784 7.5e-142 507.3 280 86.1
FAN12G0551 Fragaria x ananassa HOM05D004739 ORTHO05D005784 7.5e-142 507.3 280 86.1
FAN22G0233 Fragaria x ananassa HOM05D004739 ORTHO05D005784 7.5e-142 507.3 280 86.4
Thecc.04G186700 Theobroma cacao HOM05D004739 ORTHO05D005784 1.9e-140 502.7 280 83.9
Cpa.g.sc8.308 Carica papaya HOM05D004739 ORTHO05D005784 5.4e-140 501.1 275 84.4
CANSAT78G1796 Cannabis sativa HOM05D004739 ORTHO05D005784 9.2e-140 500.4 278 84.2
Atru.BG.162.p Acer truncatum HOM05D004739 ORTHO05D005784 1.3e-138 496.5 274 84.7
GSVIVG01031656001 Vitis vinifera HOM05D004739 ORTHO05D005784 1.3e-138 496.5 278 84.2
CSS0046373 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 6.6e-138 494.2 278 84.2
ClCG08G000320 Citrullus lanatus HOM05D004739 ORTHO05D005784 1.9e-137 492.7 278 81.3
Duzib212G0770 Durio zibethinus HOM05D004739 ORTHO05D005784 7.3e-137 490.7 279 83.2
Gohir.D02G113000 Gossypium hirsutum HOM05D004739 ORTHO05D005784 1.2e-136 490.0 275 84.0
TAR365G0018 Trochodendron aralioides HOM05D004739 ORTHO05D005784 1.2e-136 490.0 278 83.1
vmacro15619 Vaccinium macrocarpon HOM05D004739 ORTHO05D005784 4.7e-136 488.0 278 82.4
Actinidia38940 Actinidia chinensis HOM05D004739 ORTHO05D005784 6.2e-136 487.6 278 82.7
Eucgr.H00464 Eucalyptus grandis HOM05D004739 ORTHO05D005784 6.2e-136 487.6 280 81.4
Gorai.005G127900 Gossypium raimondii HOM05D004739 ORTHO05D005784 6.2e-136 487.6 275 82.9
Ciclev10004261m.g Citrus clementina HOM05D004739 ORTHO05D005784 1.1e-135 486.9 276 83.7
Manes.05G194701 Manihot esculenta HOM05D004739 ORTHO05D005784 1.1e-135 486.9 279 81.7
MBI11_g12232_MAGBIO Magnolia biondii HOM05D004739 ORTHO05D005784 1.8e-135 486.1 278 81.3
AUR62021147 Chenopodium quinoa HOM05D004739 ORTHO05D005784 4.0e-135 485.0 278 80.6
Cc03_g10760 Coffea canephora HOM05D004739 ORTHO05D005784 6.8e-135 484.2 276 81.5
Hma1.2p1_1286F.1_g273220 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 6.8e-135 484.2 278 81.3
Hma1.2p1_1286F.1_g273230 Hydrangea macrophylla HOM05D004739 ORTHO05D005784 6.8e-135 484.2 278 81.3
AUR62031390 Chenopodium quinoa HOM05D004739 ORTHO05D005784 2.0e-134 482.6 277 80.5
CsaV3_5G040440 Cucumis sativus L. HOM05D004739 ORTHO05D005784 2.0e-134 482.6 278 79.9
Potri.002G233800 Populus trichocarpa HOM05D004739 ORTHO05D005784 3.4e-134 481.9 276 83.0
Rhsim02G0071300 Rhododendron simsii HOM05D004739 ORTHO05D005784 4.4e-134 481.5 278 83.1
Sabra02G0178500 Salix brachista HOM05D004739 ORTHO05D005784 1.3e-133 479.9 280 81.4
Sed0003398 Sechium edule HOM05D004739 ORTHO05D005784 1.3e-133 479.9 278 80.2
MELO3C022216.2 Cucumis melo HOM05D004739 ORTHO05D005784 2.2e-133 479.2 278 79.1
Peaxi162Scf00286g00338 Petunia axillaris HOM05D004739 ORTHO05D005784 2.9e-133 478.8 279 80.3
TWI73G0948 Tripterygium wilfordii HOM05D004739 ORTHO05D005784 2.9e-133 478.8 279 81.4
Aqoxy2G04008 Aquilegia oxysepala HOM05D004739 ORTHO05D005784 6.4e-133 477.6 278 80.6
Lj6C358T14 Lonicera japonica HOM05D004739 ORTHO05D005784 6.4e-133 477.6 279 81.0
PSO017G5363 Papaver somniferum HOM05D004739 ORTHO05D005784 8.3e-133 477.2 278 79.9
DCAR_023801 Daucus carota HOM05D004739 ORTHO05D005784 1.9e-132 476.1 275 80.4
PSO675G2609 Papaver somniferum HOM05D004739 ORTHO05D005784 9.2e-132 473.8 278 79.5
Medtr7g022220 Medicago truncatula HOM05D004739 ORTHO05D005784 1.2e-131 473.4 277 78.7
PGR142G4233 Punica granatum HOM05D004739 ORTHO05D005784 3.5e-131 471.9 278 78.8
arahy.Tifrunner.gnm1.ann1.F9LJYJ Arachis hypogaea HOM05D004739 ORTHO05D005784 1.3e-130 469.9 279 79.2
arahy.Tifrunner.gnm1.ann1.WHDV72 Arachis hypogaea HOM05D004739 ORTHO05D005784 1.3e-130 469.9 279 79.2
Psat3g188160 Pisum sativum HOM05D004739 ORTHO05D005784 1.3e-130 469.9 277 78.3
MSTRG.24599 Avicennia marina HOM05D004739 ORTHO05D005784 3.0e-130 468.8 278 78.8
Ca_07125_v3 Cicer arietinum L. HOM05D004739 ORTHO05D005784 3.0e-130 468.8 276 78.6
HanXRQChr07g0204631 Helianthus annuus HOM05D004739 ORTHO05D005784 3.9e-130 468.4 279 79.6
Hund11729 Selenicereus undatus HOM05D004739 ORTHO05D005784 1.1e-129 466.8 278 78.4
Sc13g0008930 Simmondsia chinensis HOM05D004739 ORTHO05D005784 1.1e-129 466.8 281 77.2
SalBow3G0652 Salvia bowleyana HOM05D004739 ORTHO05D005784 2.5e-129 465.7 278 77.3
TPR.G22177 Trifolium pratense HOM05D004739 ORTHO05D005784 4.3e-129 464.9 277 78.3
Sopen09g036290 Solanum pennellii HOM05D004739 ORTHO05D005784 5.6e-129 464.5 276 79.0
Migut.N00187 Erythranthe guttata HOM05D004739 ORTHO05D005784 7.3e-129 464.2 280 77.1
Lj1g0022138 Lotus japonicus HOM05D004739 ORTHO05D005784 2.1e-128 462.6 280 77.9
Solyc09g098370.4 Solanum lycopersicum HOM05D004739 ORTHO05D005784 2.8e-128 462.2 276 79.0
Ah.07g206800 Amaranthus hybridus HOM05D004739 ORTHO05D005784 6.2e-128 461.1 277 77.3
CAN.G710.49 Capsicum annuum HOM05D004739 ORTHO05D005784 1.1e-127 460.3 276 77.5
ECA248G0146 Erigeron canadensis HOM05D004739 ORTHO05D005784 2.6e-126 455.7 273 79.9
Lsat_1_v5_gn_1_69581 Lactuca sativa HOM05D004739 ORTHO05D005784 5.8e-126 454.5 279 76.7
Lalb_Chr10g0092061 Lupinus albus HOM05D004739 ORTHO05D005784 1.7e-125 453.0 280 76.8
Glyma.18G283900 Glycine max HOM05D004739 ORTHO05D005784 3.8e-125 451.8 279 75.3
Phvul.008G017600 Phaseolus vulgaris HOM05D004739 ORTHO05D005784 6.4e-125 451.1 279 74.9
VMungo1383G1195 Vigna mungo HOM05D004739 ORTHO05D005784 8.4e-125 450.7 280 74.6
Nitab4.5_0007057g0010 Nicotiana tabacum HOM05D004739 ORTHO05D005784 1.6e-123 446.4 292 74.3
Lj6A353T83 Lonicera japonica HOM05D004739 ORTHO05D005784 2.7e-123 445.7 281 75.8
THA.LOC104805833 Tarenaya hassleriana HOM05D004739 ORTHO05D005784 8.6e-122 440.7 277 72.9
ATR1145G086 Amborella trichopoda HOM05D004739 ORTHO05D005784 9.6e-121 437.2 277 72.2
AL1G54960 Arabidopsis lyrata HOM05D004739 ORTHO05D005784 1.2e-120 436.8 278 74.5
HPP92_024254 Vanilla planifolia HOM05D004739 ORTHO05D005784 1.2e-120 436.8 280 73.2
Carub.0001s3748 Capsella rubella HOM05D004739 ORTHO05D005784 2.8e-120 435.6 279 74.2
Aa31LG10G5400 Aethionema arabicum HOM05D004739 ORTHO05D005784 4.7e-120 434.9 277 74.4
CDE02G3320 Ceratophyllum demersum HOM05D004739 ORTHO05D005784 1.8e-119 433.0 278 70.9
C08p05140 Brassica napus HOM05D004739 ORTHO05D005784 1.2e-118 430.3 279 73.1
BraA08t32506Z Brassica rapa HOM05D004739 ORTHO05D005784 1.2e-118 430.3 279 73.5
BolC8t47324H Brassica oleracea HOM05D004739 ORTHO05D005784 1.5e-118 429.9 278 73.7
HPP92_024268 Vanilla planifolia HOM05D004739 ORTHO05D005784 2.6e-118 429.1 280 72.1
A08p04770 Brassica napus HOM05D004739 ORTHO05D005784 3.4e-118 428.7 279 73.1
Thhalv10011221m.g Eutrema salsugineum HOM05D004739 ORTHO05D005784 4.4e-118 428.3 279 72.8
BcaC07g37141 Brassica carinata HOM05D004739 ORTHO05D005784 9.9e-118 427.2 279 72.8
Sp1g35310 Schrenkiella parvula HOM05D004739 ORTHO05D005784 9.3e-116 420.6 279 72.8
SGA_v2.0_scaffold550G52871 Striga asiatica HOM05D004739 ORTHO05D005784 9.3e-116 420.6 274 72.3
Os06g0171800 Oryza sativa ssp. japonica HOM05D004739 ORTHO05D005784 2.3e-114 416.0 280 71.1
Zm00001eb375390 Zea mays HOM05D004739 ORTHO05D005784 2.6e-110 402.5 280 69.6
EL10Ac3g05589 Beta vulgaris HOM05D004739 ORTHO05D005784 7.6e-110 401.0 278 70.5
Oeu006039.1 Olea europaea HOM05D004739 ORTHO05D005784 1.1e-108 397.1 272 71.0
BcaB04g17436 Brassica carinata HOM05D004739 ORTHO05D005784 9.3e-108 394.0 280 67.5
Nitab4.5_0008073g0020 Nicotiana tabacum HOM05D004739 ORTHO05D005784 7.6e-102 374.4 270 68.5
SEGI_11980 Sequoiadendron giganteum HOM05D004739 ORTHO05D005784 5.5e-100 368.2 314 58.9
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.4e-95 353.6 276 62.3
unitig_8.g4743 Utricularia gibba HOM05D004739 ORTHO05D003440 1.8e-95 353.2 223 74.4
SMO203G0018 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.0e-95 352.1 274 62.0
SMO327G0027 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 5.3e-95 351.7 274 62.0
SMO331G0087 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-93 347.4 274 60.9
SMO331G0089 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-93 346.3 274 62.4
SMO327G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.3e-90 336.3 274 60.9
Mapoly0005s0042 Marchantia polymorpha HOM05D004739 ORTHO05D005784 3.3e-89 332.4 336 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4128 Anthoceros agrestis HOM05D004739 ORTHO05D002352 5.7e-89 331.6 304 53.9
Pp3c5_2670 Physcomitrium patens HOM05D004739 ORTHO05D005784 1.6e-88 330.1 327 49.8
Dinv31047 Davidia involucrata HOM05D004739 ORTHO05D005784 1.3e-80 303.9 277 57.8
Dinv31053 Davidia involucrata HOM05D004739 ORTHO05D005784 1.3e-80 303.9 277 57.8
PGSC0003DMG400021624 Solanum tuberosum HOM05D004739 ORTHO05D005784 3.9e-74 282.3 159 80.5
CBR_g39432 Chara braunii HOM05D004739 ORTHO05D005784 1.1e-68 264.2 271 49.8
Haze_11712 Corylus avellana HOM05D004739 ORTHO05D005784 7.9e-67 258.1 139 83.5
SMO252G0014 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.0e-66 257.7 206 58.3
Cre16.g660350 Chlamydomonas reinhardtii HOM05D004739 ORTHO05D005784 3.7e-64 249.2 341 40.8
CiPaw.01G109700 Carya illinoinensis HOM05D004739 ORTHO05D005784 1.2e-62 244.2 136 85.3
PRCOL_00003987 Prasinoderma coloniale HOM05D004739 ORTHO05D005784 3.2e-60 236.1 287 44.6
CSS0028447 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 2.8e-56 223.0 129 82.9
FAN17G2248 Fragaria x ananassa HOM05D004739 ORTHO05D005784 4.1e-55 219.2 163 69.3
AT1G48360 Arabidopsis thaliana HOM05D004739 ORTHO05D005784 1.6e-54 217.2 136 75.0
SMO252G0017 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 2.2e-53 213.4 190 54.7
Glyma.08G259832 Glycine max HOM05D004739 ORTHO05D005784 2.1e-51 206.8 156 64.7
SMO327G0008 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.1e-47 194.5 134 70.1
Cfa015247 Carpinus fangiana HOM05D004739 ORTHO05D005784 1.8e-47 193.7 109 85.3
SMO331G0063 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-46 191.0 159 55.3
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.2e-43 181.0 216 48.6
SMO110G0011 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 6.1e-43 178.7 154 61.0
Lj6A353T82 Lonicera japonica HOM05D004739 ORTHO05D005784 3.1e-39 166.4 105 77.1
MCO01G753 Micromonas commoda HOM05D004739 ORTHO05D005784 1.1e-36 157.9 282 36.2
Cfa022531 Carpinus fangiana HOM05D004739 ORTHO05D121730 2.3e-34 150.2 202 37.1
Glyma.16G127800 Glycine max HOM05D004739 ORTHO05D005784 5.4e-31 139.0 89 71.9
Zm00001eb188740 Zea mays HOM05D004739 ORTHO05D005784 1.5e-28 131.0 84 73.8
SMO110G0002 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.5e-25 120.9 88 69.3
Zm00001eb188730 Zea mays HOM05D004739 ORTHO05D005784 2.0e-25 120.6 86 67.4
Prupe.1G176700 Prunus persica HOM05D004739 ORTHO05D005784 4.1e-23 112.8 58 93.1
CAN.G1076.10 Capsicum annuum HOM05D004739 ORTHO05D005784 3.0e-21 106.7 84 63.1
Actinidia34750 Actinidia chinensis HOM05D004739 ORTHO05D005784 2.3e-18 97.1 58 81.0
Gohir.A03G095900 Gossypium hirsutum HOM05D004739 ORTHO05D005784 2.3e-18 97.1 57 82.5
BolC1t05400H Brassica oleracea HOM05D000493 ORTHO05D001355 6.0e-14 82.4 64 59.4
CSS0002286 Camellia sinensis var. sinensis HOM05D004739 ORTHO05D005784 1.9e-12 77.4 58 74.1
SMO110G0004 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 4.0e-10 69.7 111 37.8
Lj6P352T60 Lonicera japonica HOM05D004739 ORTHO05D005784 5.2e-10 69.3 77 48.1
Prupe.1G176800 Prunus persica HOM05D000257 ORTHO05D009310 3.4e-09 66.6 133 36.8


User provided reference genes

Program Settings