Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MD00G1098400 Malus domestica HOM05D006268 ORTHO05D008118 1.7e-188 662.5 334 100.0
RcHm_v2.0_Chr1g0341291 Rosa chinensis HOM05D006268 ORTHO05D008118 1.3e-161 573.2 334 85.6
FAN06G0712 Fragaria x ananassa HOM05D006268 ORTHO05D008118 8.1e-159 563.9 334 83.8
FAN03G0807 Fragaria x ananassa HOM05D006268 ORTHO05D008118 1.1e-158 563.5 334 83.5
FvH4_7g08020 Fragaria vesca HOM05D006268 ORTHO05D008118 1.7e-156 556.2 334 83.2
Prupe.2G109200 Prunus persica HOM05D006268 ORTHO05D008118 8.4e-156 553.9 335 84.8
FAN01G0355 Fragaria x ananassa HOM05D006268 ORTHO05D008118 2.1e-151 539.3 378 73.5
Cfa010996 Carpinus fangiana HOM05D006268 ORTHO05D008118 1.2e-146 523.5 332 79.8
CANSAT54G1338 Cannabis sativa HOM05D006268 ORTHO05D008118 4.6e-146 521.5 332 78.0
Haze_02942 Corylus avellana HOM05D006268 ORTHO05D008118 6.7e-145 517.7 332 79.2
Potri.002G238300 Populus trichocarpa HOM05D006268 ORTHO05D008118 1.1e-144 516.9 329 77.5
CiPaw.13G019100 Carya illinoinensis HOM05D006268 ORTHO05D008118 1.5e-144 516.5 339 78.5
Sabra02G0181600 Salix brachista HOM05D006268 ORTHO05D008118 4.5e-141 505.0 326 76.4
MELO3C006233.2 Cucumis melo HOM05D006268 ORTHO05D008118 8.4e-140 500.7 330 75.5
TWI59G0917 Tripterygium wilfordii HOM05D006268 ORTHO05D008118 1.9e-139 499.6 329 77.5
GSVIVG01016051001 Vitis vinifera HOM05D006268 ORTHO05D008118 3.0e-137 492.3 330 73.6
CsaV3_3G010120 Cucumis sativus L. HOM05D006268 ORTHO05D008118 8.7e-137 490.7 330 74.2
QL04p024264 Quercus lobata HOM05D006268 ORTHO05D008118 1.5e-136 490.0 354 70.9
Glyma.03G093200 Glycine max HOM05D006268 ORTHO05D008118 4.8e-135 485.0 330 73.3
Eucgr.D01130 Eucalyptus grandis HOM05D006268 ORTHO05D008118 1.8e-134 483.0 337 70.9
Ca_23170_v3 Cicer arietinum L. HOM05D006268 ORTHO05D008118 5.3e-134 481.5 336 74.1
Sed0013667 Sechium edule HOM05D006268 ORTHO05D008118 5.3e-134 481.5 329 73.3
TAR375G0229 Trochodendron aralioides HOM05D006268 ORTHO05D008118 6.9e-134 481.1 330 74.2
VMungo0331G0592 Vigna mungo HOM05D006268 ORTHO05D008118 6.9e-134 481.1 331 73.1
Glyma.16G080700 Glycine max HOM05D006268 ORTHO05D008118 1.2e-133 480.3 330 73.6
Lalb_Chr07g0194551 Lupinus albus HOM05D006268 ORTHO05D008118 2.0e-133 479.6 330 73.0
Thecc.03G001300 Theobroma cacao HOM05D006268 ORTHO05D008118 1.7e-132 476.5 329 73.6
Lj3g0019214 Lotus japonicus HOM05D006268 ORTHO05D008118 3.8e-132 475.3 330 73.0
Phvul.010G033866 Phaseolus vulgaris HOM05D006268 ORTHO05D008118 6.5e-132 474.6 330 71.8
Psat4g207400 Pisum sativum HOM05D006268 ORTHO05D008118 1.4e-131 473.4 336 72.0
Ciclev10021110m.g Citrus clementina HOM05D006268 ORTHO05D008118 4.2e-131 471.9 329 72.3
Gohir.A06G169600 Gossypium hirsutum HOM05D006268 ORTHO05D008118 7.9e-130 467.6 329 71.4
Actinidia33290 Actinidia chinensis HOM05D006268 ORTHO05D008118 1.3e-129 466.8 334 72.2
Duzib128G0100 Durio zibethinus HOM05D006268 ORTHO05D008118 3.0e-129 465.7 342 69.9
CSS0005578 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.1e-128 463.8 330 71.8
DCAR_029548 Daucus carota HOM05D006268 ORTHO05D008118 1.9e-128 463.0 335 70.4
PGR083G0810 Punica granatum HOM05D006268 ORTHO05D008118 5.7e-128 461.5 338 70.1
Nn1g00551 Nelumbo nucifera HOM05D006268 ORTHO05D008118 1.3e-127 460.3 336 70.8
vmacro21105 Vaccinium macrocarpon HOM05D006268 ORTHO05D008118 2.2e-127 459.5 336 69.6
Rhsim01G0145800 Rhododendron simsii HOM05D006268 ORTHO05D008118 6.3e-127 458.0 331 70.7
Sc26g0001930 Simmondsia chinensis HOM05D006268 ORTHO05D008118 8.2e-127 457.6 332 72.0
Nitab4.5_0001209g0060 Nicotiana tabacum HOM05D006268 ORTHO05D008118 1.1e-126 457.2 337 69.7
COL.COLO4_19510 Corchorus olitorius HOM05D006268 ORTHO05D006513 1.4e-126 456.8 329 69.9
Gorai.N008000 Gossypium raimondii HOM05D006268 ORTHO05D008118 3.1e-126 455.7 329 70.5
Medtr8g010550 Medicago truncatula HOM05D006268 ORTHO05D008118 1.5e-125 453.4 339 68.7
ClCG05G002670 Citrullus lanatus HOM05D006268 ORTHO05D008118 1.0e-124 450.7 330 70.0
MSTRG.4977 Avicennia marina HOM05D006268 ORTHO05D008118 5.0e-124 448.4 330 69.1
Nitab4.5_0001476g0040 Nicotiana tabacum HOM05D006268 ORTHO05D008118 8.5e-124 447.6 337 68.5
CAN.G1551.1 Capsicum annuum HOM05D006268 ORTHO05D008118 6.1e-122 441.4 337 66.8
Cc02_g26120 Coffea canephora HOM05D006268 ORTHO05D008118 6.1e-122 441.4 338 67.2
PSO063G1446 Papaver somniferum HOM05D006268 ORTHO05D008118 3.0e-121 439.1 336 66.7
Migut.N01815 Erythranthe guttata HOM05D006268 ORTHO05D008118 3.9e-121 438.7 331 66.5
PSO782G1498 Papaver somniferum HOM05D006268 ORTHO05D008118 1.1e-120 437.2 330 67.0
Solyc01g080940.3 Solanum lycopersicum HOM05D006268 ORTHO05D008118 1.5e-120 436.8 337 67.4
EL10Ac1g00692 Beta vulgaris HOM05D006268 ORTHO05D008118 2.0e-120 436.4 330 66.4
PGSC0003DMG400001820 Solanum tuberosum HOM05D006268 ORTHO05D008118 9.7e-120 434.1 337 66.2
Sopen01g032530 Solanum pennellii HOM05D006268 ORTHO05D008118 2.8e-119 432.6 337 67.4
Atru.BG.53.p Acer truncatum HOM05D006268 ORTHO05D008118 1.1e-118 430.6 321 70.4
Aqoxy3G02409 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 4.1e-118 428.7 338 66.3
Aqoxy3G02437 Aquilegia oxysepala HOM05D006268 ORTHO05D008118 4.1e-118 428.7 338 66.3
AUR62023342 Chenopodium quinoa HOM05D006268 ORTHO05D008118 5.3e-118 428.3 331 65.9
HanXRQChr04g0123661 Helianthus annuus HOM05D006268 ORTHO05D008118 2.6e-117 426.0 337 64.4
CSS0033423 Camellia sinensis var. sinensis HOM05D006268 ORTHO05D008118 1.0e-116 424.1 329 67.2
SalBow4G0743 Salvia bowleyana HOM05D006268 ORTHO05D008118 1.3e-116 423.7 331 64.7
Ah.06g189690 Amaranthus hybridus HOM05D006268 ORTHO05D008118 5.0e-116 421.8 346 63.0
arahy.Tifrunner.gnm1.ann1.V3PJPX Arachis hypogaea HOM05D006268 ORTHO05D008118 8.5e-116 421.0 330 67.6
FAN10G2079 Fragaria x ananassa HOM05D006268 ORTHO05D008118 8.5e-116 421.0 301 73.8
Hund26937 Selenicereus undatus HOM05D006268 ORTHO05D008118 1.1e-115 420.6 330 65.2
arahy.Tifrunner.gnm1.ann1.EHLP6C Arachis hypogaea HOM05D006268 ORTHO05D008118 2.5e-115 419.5 330 67.3
Lsat_1_v5_gn_7_10860 Lactuca sativa HOM05D006268 ORTHO05D008118 7.2e-115 417.9 329 65.0
BcaB05g22409 Brassica carinata HOM05D006268 ORTHO05D008118 7.0e-110 401.4 329 60.8
Manes.08G055700 Manihot esculenta HOM05D006268 ORTHO05D008118 1.2e-109 400.6 291 70.8
BcaC03g14111 Brassica carinata HOM05D006268 ORTHO05D008118 1.6e-109 400.2 329 61.4
C02p13500 Brassica napus HOM05D006268 ORTHO05D008118 2.0e-109 399.8 329 61.7
BolC2t07462H Brassica oleracea HOM05D006268 ORTHO05D008118 2.0e-109 399.8 329 61.7
BraA02t05859Z Brassica rapa HOM05D006268 ORTHO05D008118 1.0e-108 397.5 329 61.4
A02p07860 Brassica napus HOM05D006268 ORTHO05D008118 2.9e-108 396.0 329 61.1
unitig_22.g5778 Utricularia gibba HOM05D006268 ORTHO05D008118 6.5e-108 394.8 330 63.3
ATR0049G059 Amborella trichopoda HOM05D006268 ORTHO05D008118 1.2e-106 390.6 336 61.0
TPR.G9770 Trifolium pratense HOM05D006268 ORTHO05D008118 1.6e-106 390.2 330 61.5
Thhalv10014126m.g Eutrema salsugineum HOM05D006268 ORTHO05D008118 2.7e-106 389.4 329 59.6
Aa31LG11G10 Aethionema arabicum HOM05D006268 ORTHO05D008118 1.5e-104 383.6 332 59.9
THA.LOC104799599 Tarenaya hassleriana HOM05D006268 ORTHO05D008118 9.7e-104 380.9 331 57.7
AL8G34320 Arabidopsis lyrata HOM05D006268 ORTHO05D008118 1.8e-102 376.7 329 58.1
AUR62013813 Chenopodium quinoa HOM05D006268 ORTHO05D008118 1.3e-100 370.5 330 59.1
Sp6g19880 Schrenkiella parvula HOM05D006268 ORTHO05D008118 1.7e-100 370.2 329 57.1
Os03g0390700 Oryza sativa ssp. japonica HOM05D006268 ORTHO05D008118 6.5e-100 368.2 333 58.9
CARHR272020 Cardamine hirsuta HOM05D006268 ORTHO05D008118 1.5e-99 367.1 329 56.5
HPP92_028001 Vanilla planifolia HOM05D006268 ORTHO05D008118 2.7e-98 362.8 329 55.9
SEGI_16160 Sequoiadendron giganteum HOM05D006268 ORTHO05D008118 1.4e-97 360.5 355 55.2
Zm00001eb392560 Zea mays HOM05D006268 ORTHO05D008118 4.0e-97 359.0 327 56.9
Carub.0008s1876 Capsella rubella HOM05D006268 ORTHO05D008118 1.2e-96 357.5 329 56.8
AT5G58220 Arabidopsis thaliana HOM05D006268 ORTHO05D008118 1.5e-96 357.1 329 55.9
ECA236G2174 Erigeron canadensis HOM05D006268 ORTHO05D008118 1.6e-93 347.1 320 57.5
Dinv43994 Davidia involucrata HOM05D006268 ORTHO05D008118 2.0e-88 330.1 239 72.4
SGA_v2.0_scaffold95G28736 Striga asiatica HOM05D006268 ORTHO05D008118 5.7e-80 302.0 246 63.8
CDE04G2879 Ceratophyllum demersum HOM05D006268 ORTHO05D008118 6.4e-79 298.5 274 57.7
Pp3c4_10360 Physcomitrium patens HOM05D006268 ORTHO05D008118 1.8e-78 297.0 337 50.4
SMO367G0371 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 9.5e-75 284.6 354 46.0
Mapoly0090s0043 Marchantia polymorpha HOM05D006268 ORTHO05D008118 6.0e-69 265.4 343 45.5
CBR_g30589 Chara braunii HOM05D006268 ORTHO05D008118 5.8e-64 248.8 466 36.1
AagrBONN_evm.TU.Sc2ySwM_228.2734 Anthoceros agrestis HOM05D006268 ORTHO05D008118 7.1e-62 241.9 311 44.7
Lj7C555G14 Lonicera japonica HOM05D006268 ORTHO05D008118 9.5e-59 231.5 176 67.0
BcaB05g22411 Brassica carinata HOM05D006268 ORTHO05D008118 1.9e-54 217.2 192 58.3
Lj7C555T10 Lonicera japonica HOM05D006268 ORTHO05D008118 2.4e-54 216.9 151 72.2
PRCOL_00004243 Prasinoderma coloniale HOM05D006268 ORTHO05D008118 6.6e-52 208.8 336 37.8
Cre17.g735950 Chlamydomonas reinhardtii HOM05D006268 ORTHO05D008118 4.7e-50 202.6 341 36.4
DCAR_025012 Daucus carota HOM05D006268 ORTHO05D008118 6.2e-50 202.2 165 65.5
Cpa.g.sc74.89 Carica papaya HOM05D006268 ORTHO05D008118 3.8e-47 193.0 176 61.4
SMO197G0011 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 3.9e-36 156.4 143 57.3
SMO367G0431 Selaginella moellendorffii HOM05D006268 ORTHO05D008118 8.7e-36 155.2 167 49.7
SHI28983 Sapria himalayana HOM05D006268 ORTHO05D008118 1.6e-34 151.0 160 52.5
Sc26g0001910 Simmondsia chinensis HOM05D006268 ORTHO05D008118 3.6e-34 149.8 150 55.3
MCO07G440 Micromonas commoda HOM05D006268 ORTHO05D008118 9.9e-32 141.7 154 48.7
MD02G1236900 Malus domestica HOM05D006268 ORTHO05D008118 9.3e-30 135.2 134 62.7
BolC9t57859H Brassica oleracea HOM05D006268 ORTHO05D008118 5.6e-27 125.9 81 69.1
Hma1.2p1_0076F.1_g039600 Hydrangea macrophylla HOM05D006268 ORTHO05D008118 1.8e-17 94.4 57 68.4
Oeu050272.1 Olea europaea HOM05D006268 ORTHO05D008118 1.8e-17 94.4 71 64.8
MCO05G065 Micromonas commoda HOM05D006268 ORTHO05D008118 1.5e-16 91.3 132 39.4
Sabra14G0137200 Salix brachista HOM05D008143 ORTHO05D010256 3.4e-16 90.1 75 58.7
Cfa010995 Carpinus fangiana HOM05D006268 ORTHO05D008118 3.6e-13 80.1 59 72.9
BcaC04g19902 Brassica carinata HOM05D006268 ORTHO05D008118 6.7e-12 75.9 57 56.1
Dinv43550 Davidia involucrata HOM05D006268 ORTHO05D008118 3.4e-08 63.5 63 57.1
SHI28985 Sapria himalayana HOM05D000023 ORTHO05D000014 5.0e-07 59.7 79 43.0
C09p50070 Brassica napus HOM05D006268 ORTHO05D008118 3.2e-06 57.0 81 43.2


User provided reference genes

Program Settings