Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G513 Micromonas commoda HOM05D005330 ORTHO05D006489 1.1e-107 393.3 196 100.0
Psat0s741g0240 Pisum sativum HOM05D005330 ORTHO05D006489 1.0e-07 61.2 55 43.6
COL.COLO4_30752 Corchorus olitorius HOM05D005330 ORTHO05D006489 1.3e-07 60.8 55 47.3
Actinidia21790 Actinidia chinensis HOM05D005330 ORTHO05D006489 1.7e-07 60.5 55 45.5
CAN.G1455.4 Capsicum annuum HOM05D005330 ORTHO05D006489 1.7e-07 60.5 87 33.3
Actinidia32189 Actinidia chinensis HOM05D005330 ORTHO05D006489 2.2e-07 60.1 55 45.5
Cre03.g173900 Chlamydomonas reinhardtii HOM05D001407 ORTHO05D001314 3.8e-07 59.3 77 39.0
Ca_23387_v3 Cicer arietinum L. HOM05D005330 ORTHO05D006489 3.8e-07 59.3 55 43.6
Thecc.06G120800 Theobroma cacao HOM05D005330 ORTHO05D006489 3.8e-07 59.3 55 45.5
VMungo0331G1542 Vigna mungo HOM05D005330 ORTHO05D006489 3.8e-07 59.3 55 43.6
CAN.G1080.1 Capsicum annuum HOM05D005330 ORTHO05D006489 5.0e-07 58.9 87 32.2
CiPaw.01G218300 Carya illinoinensis HOM05D005330 ORTHO05D006489 5.0e-07 58.9 55 40.0
SalBow6G0331 Salvia bowleyana HOM05D005330 ORTHO05D006489 5.0e-07 58.9 55 43.6
SalBow6G0719 Salvia bowleyana HOM05D005330 ORTHO05D006489 5.0e-07 58.9 55 43.6
DCAR_022693 Daucus carota HOM05D005330 ORTHO05D006489 6.5e-07 58.5 55 41.8
Duzib160G0528 Durio zibethinus HOM05D005330 ORTHO05D006489 6.5e-07 58.5 55 43.6
Glyma.03G080300 Glycine max HOM05D005330 ORTHO05D006489 6.5e-07 58.5 55 41.8
Glyma.18G149800 Glycine max HOM05D005330 ORTHO05D006489 6.5e-07 58.5 55 41.8
Gohir.D10G055300 Gossypium hirsutum HOM05D005330 ORTHO05D006489 6.5e-07 58.5 55 45.5
Gorai.011G059000 Gossypium raimondii HOM05D005330 ORTHO05D006489 6.5e-07 58.5 55 45.5
Medtr8g020850 Medicago truncatula HOM05D005330 ORTHO05D006489 6.5e-07 58.5 55 43.6
Phvul.010G129300 Phaseolus vulgaris HOM05D005330 ORTHO05D006489 6.5e-07 58.5 55 41.8
TPR.G36682 Trifolium pratense HOM05D005330 ORTHO05D006489 6.5e-07 58.5 55 41.8
vmacro15037 Vaccinium macrocarpon HOM05D005330 ORTHO05D006489 6.5e-07 58.5 79 32.9
Atru.chr1.3993 Acer truncatum HOM05D005330 ORTHO05D006489 8.5e-07 58.2 55 45.5
CDE05G1829 Ceratophyllum demersum HOM05D005330 ORTHO05D006489 8.5e-07 58.2 55 41.8
Migut.I01076 Erythranthe guttata HOM05D005330 ORTHO05D006489 8.5e-07 58.2 55 45.5
Sabra03G0038500 Salix brachista HOM05D005330 ORTHO05D006489 8.5e-07 58.2 51 45.1
BcaC01g01224 Brassica carinata HOM05D002547 ORTHO05D002649 1.1e-06 57.8 61 41.0
C03p89580 Brassica napus HOM05D002547 ORTHO05D002649 1.1e-06 57.8 61 41.0
BolC3t21272H Brassica oleracea HOM05D002547 ORTHO05D002649 1.1e-06 57.8 61 41.0
Gohir.A10G053500 Gossypium hirsutum HOM05D005330 ORTHO05D006489 1.1e-06 57.8 55 43.6
Lalb_Chr04g0263541 Lupinus albus HOM05D005330 ORTHO05D006489 1.1e-06 57.8 55 43.6
Potri.003G065500 Populus trichocarpa HOM05D005330 ORTHO05D006489 1.1e-06 57.8 51 43.1
CBR_g30911 Chara braunii HOM05D001948 ORTHO05D001873 1.4e-06 57.4 54 40.7
Eucgr.F04419 Eucalyptus grandis HOM05D005330 ORTHO05D006489 1.4e-06 57.4 55 41.8
Glyma.16G008300 Glycine max HOM05D005330 ORTHO05D006489 1.4e-06 57.4 55 41.8
Lj5A36G79 Lonicera japonica HOM05D005330 ORTHO05D006489 1.4e-06 57.4 55 40.0
MD02G1089500 Malus domestica HOM05D005330 ORTHO05D006489 1.4e-06 57.4 51 41.2
Sp2g00790 Schrenkiella parvula HOM05D003358 ORTHO05D003864 1.4e-06 57.4 91 31.9
Atru.chr1.3994 Acer truncatum HOM05D005330 ORTHO05D006489 1.9e-06 57.0 55 45.5
Aa31LG9G2960 Aethionema arabicum HOM05D002547 ORTHO05D002649 1.9e-06 57.0 69 40.6
ATR0598G333 Amborella trichopoda HOM05D005330 ORTHO05D006489 1.9e-06 57.0 55 36.4
BcaB02g10114 Brassica carinata HOM05D002547 ORTHO05D002649 1.9e-06 57.0 60 40.0
BolC1t04012H Brassica oleracea HOM05D002547 ORTHO05D002649 1.9e-06 57.0 68 38.2
Ciclev10025803m.g Citrus clementina HOM05D005330 ORTHO05D006489 1.9e-06 57.0 55 43.6
Cc04_g01320 Coffea canephora HOM05D005330 ORTHO05D006489 1.9e-06 57.0 55 41.8
Lj3g0015373 Lotus japonicus HOM05D005330 ORTHO05D006489 1.9e-06 57.0 55 41.8
PGR119G1300 Punica granatum HOM05D005330 ORTHO05D006489 1.9e-06 57.0 61 37.7
QL05p004250 Quercus lobata HOM05D005330 ORTHO05D006489 1.9e-06 57.0 55 40.0
SGA_v2.0_scaffold71G23853 Striga asiatica HOM05D005330 ORTHO05D006489 1.9e-06 57.0 51 45.1
BraA01t03298Z Brassica rapa HOM05D002547 ORTHO05D002649 2.5e-06 56.6 68 36.8
Pp3c13_4370 Physcomitrium patens HOM05D002547 ORTHO05D002649 2.5e-06 56.6 64 42.2
Potri.001G168700 Populus trichocarpa HOM05D005330 ORTHO05D006489 2.5e-06 56.6 55 41.8
Sc10g0007910 Simmondsia chinensis HOM05D005330 ORTHO05D006489 2.5e-06 56.6 55 41.8
Solyc12g049330.2 Solanum lycopersicum HOM05D005330 ORTHO05D006489 2.5e-06 56.6 81 33.3
AT4G14365 Arabidopsis thaliana HOM05D002547 ORTHO05D002649 3.2e-06 56.2 60 38.3
BcaC09g49281 Brassica carinata HOM05D002547 ORTHO05D002649 3.2e-06 56.2 68 36.8
A08p03200 Brassica napus HOM05D002547 ORTHO05D002649 3.2e-06 56.2 61 39.3
C01p40590 Brassica napus HOM05D002547 ORTHO05D002649 3.2e-06 56.2 68 36.8
BraA08t32352Z Brassica rapa HOM05D002547 ORTHO05D002649 3.2e-06 56.2 61 39.3
DCAR_016124 Daucus carota HOM05D005330 ORTHO05D006489 3.2e-06 56.2 55 43.6
Hma1.2p1_0686F.1_g203410 Hydrangea macrophylla HOM05D005330 ORTHO05D006489 3.2e-06 56.2 55 43.6
Lsat_1_v5_gn_5_136241 Lactuca sativa HOM05D005330 ORTHO05D006489 3.2e-06 56.2 69 34.8
Nitab4.5_0000189g0150 Nicotiana tabacum HOM05D005330 ORTHO05D006489 3.2e-06 56.2 55 41.8
Prupe.3G040200 Prunus persica HOM05D005330 ORTHO05D006489 3.2e-06 56.2 55 40.0
Hund13920 Selenicereus undatus HOM05D001948 ORTHO05D001873 3.2e-06 56.2 51 41.2
GSVIVG01016752001 Vitis vinifera HOM05D005330 ORTHO05D006489 3.2e-06 56.2 55 41.8
CSS0027574 Camellia sinensis var. sinensis HOM05D005330 ORTHO05D006489 4.2e-06 55.8 51 41.2
FvH4_6g34790 Fragaria vesca HOM05D005330 ORTHO05D006489 4.2e-06 55.8 55 40.0
FAN05G5341 Fragaria x ananassa HOM05D005330 ORTHO05D006489 4.2e-06 55.8 55 40.0
Sopen12g023810 Solanum pennellii HOM05D005330 ORTHO05D006489 4.2e-06 55.8 81 33.3
Aa31LG8G9820 Aethionema arabicum HOM05D002547 ORTHO05D002649 5.5e-06 55.5 68 38.2
BcaC05g26297 Brassica carinata HOM05D002547 ORTHO05D002649 5.5e-06 55.5 68 36.8
A01p31700 Brassica napus HOM05D002547 ORTHO05D002649 5.5e-06 55.5 68 36.8
C05p23120 Brassica napus HOM05D002547 ORTHO05D002649 5.5e-06 55.5 68 36.8
BolC5t31013H Brassica oleracea HOM05D002547 ORTHO05D002649 5.5e-06 55.5 68 36.8
CBR_g5661 Chara braunii HOM05D004133 ORTHO05D002649 5.5e-06 55.5 50 38.0
Cc01_g14240 Coffea canephora HOM05D001948 ORTHO05D001873 5.5e-06 55.5 83 36.1
Hund18689 Selenicereus undatus HOM05D005330 ORTHO05D006489 5.5e-06 55.5 55 40.0
PGSC0003DMG400014100 Solanum tuberosum HOM05D005330 ORTHO05D006489 5.5e-06 55.5 55 40.0
arahy.Tifrunner.gnm1.ann1.5AU2WJ Arachis hypogaea HOM05D001407 ORTHO05D001314 7.2e-06 55.1 86 37.2
arahy.Tifrunner.gnm1.ann1.8N7HPT Arachis hypogaea HOM05D001407 ORTHO05D001314 7.2e-06 55.1 86 37.2
BcaB04g20456 Brassica carinata HOM05D002547 ORTHO05D002649 7.2e-06 55.1 68 36.8
Manes.11G019800 Manihot esculenta HOM05D005330 ORTHO05D006489 7.2e-06 55.1 55 41.8
Nn6g34611 Nelumbo nucifera HOM05D005330 ORTHO05D006489 7.2e-06 55.1 55 40.0
Sed0005660 Sechium edule HOM05D005330 ORTHO05D006489 7.2e-06 55.1 59 37.3
Aa31LG10G16880 Aethionema arabicum HOM05D003358 ORTHO05D003864 9.4e-06 54.7 52 36.5
AL7G41860 Arabidopsis lyrata HOM05D002547 ORTHO05D002649 9.4e-06 54.7 55 38.2
BcaB07g32373 Brassica carinata HOM05D002547 ORTHO05D002649 9.4e-06 54.7 68 36.8
BcaC09g49278 Brassica carinata HOM05D002547 ORTHO05D002649 9.4e-06 54.7 68 39.7
C01p40620 Brassica napus HOM05D002547 ORTHO05D002649 9.4e-06 54.7 68 39.7
Carub.0007s2789 Capsella rubella HOM05D002547 ORTHO05D002649 9.4e-06 54.7 61 36.1
AUR62001479 Chenopodium quinoa HOM05D005330 ORTHO05D006489 9.4e-06 54.7 55 40.0
Dinv20432 Davidia involucrata HOM05D005330 ORTHO05D006489 9.4e-06 54.7 55 40.0
Thhalv10020731m.g Eutrema salsugineum HOM05D002547 ORTHO05D002649 9.4e-06 54.7 68 35.3
HanXRQChr12g0360301 Helianthus annuus HOM05D005330 ORTHO05D006489 9.4e-06 54.7 51 41.2
HanXRQChr12g0360331 Helianthus annuus HOM05D005330 ORTHO05D006489 9.4e-06 54.7 51 41.2
HanXRQChr12g0360351 Helianthus annuus HOM05D005330 ORTHO05D006489 9.4e-06 54.7 51 41.2
Sp7g12440 Schrenkiella parvula HOM05D002547 ORTHO05D002649 9.4e-06 54.7 53 39.6
SEGI_21309 Sequoiadendron giganteum HOM05D005330 ORTHO05D006489 9.4e-06 54.7 55 45.5


User provided reference genes

Program Settings