Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MCO16G448 Micromonas commoda HOM05D003809 ORTHO05D003935 1.6e-155 552.7 292 100.0
MCO16G173 Micromonas commoda HOM05D003809 ORTHO05D003935 4.0e-45 186.0 279 39.8
Glyma.03G061700 Glycine max HOM05D003809 ORTHO05D003935 1.8e-13 80.9 159 30.8
Glyma.01G115000 Glycine max HOM05D003809 ORTHO05D003935 5.3e-13 79.3 163 30.1
Glyma.03G062800 Glycine max HOM05D003809 ORTHO05D003935 6.9e-13 79.0 209 26.8
Glyma.03G061852 Glycine max HOM05D003809 ORTHO05D003935 1.2e-12 78.2 159 30.2
Glyma.03G062300 Glycine max HOM05D003809 ORTHO05D003935 1.2e-12 78.2 159 30.2
Glyma.U024600 Glycine max HOM05D003809 ORTHO05D003935 1.5e-12 77.8 159 30.2
Cre09.g415600 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 2.0e-12 77.4 224 33.0
Glyma.03G061802 Glycine max HOM05D003809 ORTHO05D003935 2.0e-12 77.4 139 31.7
Glyma.03G062100 Glycine max HOM05D003809 ORTHO05D003935 2.0e-12 77.4 139 31.7
Migut.L02004 Erythranthe guttata HOM05D003809 ORTHO05D003935 3.4e-12 76.6 95 33.7
Glyma.03G062500 Glycine max HOM05D003809 ORTHO05D003935 3.4e-12 76.6 207 27.5
arahy.Tifrunner.gnm1.ann1.31N575 Arachis hypogaea HOM05D003809 ORTHO05D003935 4.5e-12 76.3 104 31.7
arahy.Tifrunner.gnm1.ann1.3JQR8Y Arachis hypogaea HOM05D003809 ORTHO05D003935 4.5e-12 76.3 104 31.7
Peaxi162Scf00141g00342 Petunia axillaris HOM05D003809 ORTHO05D003935 4.5e-12 76.3 168 25.6
SGA_v2.0_scaffold240G44100 Striga asiatica HOM05D003809 ORTHO05D003935 4.5e-12 76.3 99 32.3
MSTRG.10226 Avicennia marina HOM05D003809 ORTHO05D003935 5.9e-12 75.9 202 28.2
Glyma.03G063000 Glycine max HOM05D003809 ORTHO05D003935 5.9e-12 75.9 201 27.4
Lj3g0017704 Lotus japonicus HOM05D003809 ORTHO05D003935 5.9e-12 75.9 149 28.2
Pp3c6_22980 Physcomitrium patens HOM05D003809 ORTHO05D003935 5.9e-12 75.9 100 35.0
arahy.Tifrunner.gnm1.ann1.TSB66L Arachis hypogaea HOM05D003809 ORTHO05D003935 1.3e-11 74.7 104 30.8
Lalb_Chr07g0193501 Lupinus albus HOM05D003809 ORTHO05D003935 2.9e-11 73.6 80 33.8
SalBow4G1747 Salvia bowleyana HOM05D003809 ORTHO05D003935 3.8e-11 73.2 160 30.0
Cre12.g492750 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D138784 6.5e-11 72.4 92 37.0
vmacro08854 Vaccinium macrocarpon HOM05D003809 ORTHO05D003935 6.5e-11 72.4 123 26.8
RcHm_v2.0_Chr3g0463311 Rosa chinensis HOM05D003809 ORTHO05D003935 8.5e-11 72.0 112 30.4
Solyc09g014400.3 Solanum lycopersicum HOM05D003809 ORTHO05D003935 8.5e-11 72.0 122 27.9
FAN14G0248 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.1e-10 71.6 112 30.4
Gohir.D11G348800 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.1e-10 71.6 98 31.6
Gorai.007G379100 Gossypium raimondii HOM05D003809 ORTHO05D003935 1.1e-10 71.6 98 31.6
ClCG10G022040 Citrullus lanatus HOM05D003809 ORTHO05D003935 1.4e-10 71.2 135 23.7
MELO3C009176.2 Cucumis melo HOM05D003809 ORTHO05D003935 1.4e-10 71.2 132 24.2
Glyma.03G061751 Glycine max HOM05D003809 ORTHO05D003935 1.4e-10 71.2 115 33.9
Glyma.07G148000 Glycine max HOM05D003809 ORTHO05D003935 1.4e-10 71.2 149 28.9
PSO566G0296 Papaver somniferum HOM05D003809 ORTHO05D003935 1.4e-10 71.2 101 32.7
Cre06.g269650 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.9e-10 70.9 91 33.0
PSO566G0209 Papaver somniferum HOM05D003809 ORTHO05D003935 1.9e-10 70.9 101 32.7
Aa31LG1G22880 Aethionema arabicum HOM05D003809 ORTHO05D003935 3.2e-10 70.1 125 28.8
CDE03G0216 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 3.2e-10 70.1 153 24.8
TPR.G13325 Trifolium pratense HOM05D003809 ORTHO05D003935 3.2e-10 70.1 164 24.4
Cc01_g20760 Coffea canephora HOM05D003809 ORTHO05D003935 4.2e-10 69.7 73 35.6
Cc06_g01490 Coffea canephora HOM05D003809 ORTHO05D003935 4.2e-10 69.7 73 35.6
FAN09G2283 Fragaria x ananassa HOM05D003809 ORTHO05D003935 4.2e-10 69.7 112 29.5
Gohir.A09G164500 Gossypium hirsutum HOM05D003809 ORTHO05D003935 4.2e-10 69.7 101 32.7
Gohir.A11G329600 Gossypium hirsutum HOM05D003809 ORTHO05D003935 4.2e-10 69.7 86 32.6
Sc07g0006540 Simmondsia chinensis HOM05D003809 ORTHO05D003935 4.2e-10 69.7 75 34.7
TAR623G0913 Trochodendron aralioides HOM05D003809 ORTHO05D003935 4.2e-10 69.7 109 27.5
AagrBONN_evm.TU.Sc2ySwM_344.3507 Anthoceros agrestis HOM05D003809 ORTHO05D003935 5.5e-10 69.3 151 30.5
CAN.G772.1 Capsicum annuum HOM05D003809 ORTHO05D003935 5.5e-10 69.3 183 27.3
DCAR_015432 Daucus carota HOM05D003809 ORTHO05D003935 5.5e-10 69.3 86 32.6
FvH4_6g11650 Fragaria vesca HOM05D003809 ORTHO05D003935 5.5e-10 69.3 136 26.5
Pp3c23_18810 Physcomitrium patens HOM05D028458 ORTHO05D003935 5.5e-10 69.3 115 30.4
COL.COLO4_19141 Corchorus olitorius HOM05D000001 ORTHO05D000003 7.2e-10 68.9 86 34.9
FAN14G4099 Fragaria x ananassa HOM05D003809 ORTHO05D003935 7.2e-10 68.9 136 26.5
Glyma.18G199300 Glycine max HOM05D003809 ORTHO05D003935 7.2e-10 68.9 147 27.9
SMO142G0031 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 7.2e-10 68.9 83 33.7
Sopen09g007230 Solanum pennellii HOM05D003809 ORTHO05D003935 7.2e-10 68.9 183 22.4
VMungo0331G1847 Vigna mungo HOM05D003809 ORTHO05D003935 7.2e-10 68.9 114 31.6
Cpa.g.sc112.34 Carica papaya HOM05D003809 ORTHO05D003935 9.3e-10 68.6 124 29.8
Duzib128G0737 Durio zibethinus HOM05D003809 ORTHO05D003935 9.3e-10 68.6 97 30.9
VMungo1383G0216 Vigna mungo HOM05D003809 ORTHO05D003935 9.3e-10 68.6 155 29.0
CDE04G0185 Ceratophyllum demersum HOM05D003809 ORTHO05D003935 1.2e-09 68.2 96 27.1
Gorai.006G181700 Gossypium raimondii HOM05D003809 ORTHO05D003935 1.2e-09 68.2 101 32.7
Medtr4g015550 Medicago truncatula HOM05D003809 ORTHO05D003935 1.2e-09 68.2 102 28.4
Pp3c16_3300 Physcomitrium patens HOM05D003809 ORTHO05D003935 1.2e-09 68.2 200 30.0
Potri.006G099200 Populus trichocarpa HOM05D003809 ORTHO05D003935 1.2e-09 68.2 181 25.4
Sabra06G0076000 Salix brachista HOM05D003809 ORTHO05D003935 1.2e-09 68.2 181 25.4
SMO118G0122 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 1.2e-09 68.2 155 29.7
CsaV3_3G033890 Cucumis sativus L. HOM05D003809 ORTHO05D003935 1.6e-09 67.8 132 23.5
Gohir.D09G160100 Gossypium hirsutum HOM05D003809 ORTHO05D003935 1.6e-09 67.8 101 32.7
Lj1g0000205 Lotus japonicus HOM05D003809 ORTHO05D003935 1.6e-09 67.8 78 34.6
MCO03G388 Micromonas commoda HOM05D003809 ORTHO05D003935 1.6e-09 67.8 101 31.7
Nitab4.5_0001693g0060 Nicotiana tabacum HOM05D001235 ORTHO05D005684 1.6e-09 67.8 88 36.4
ATR0618G237 Amborella trichopoda HOM05D003809 ORTHO05D003935 2.1e-09 67.4 86 30.2
FAN02G0645 Fragaria x ananassa HOM05D003809 ORTHO05D003935 2.1e-09 67.4 136 25.7
CARHR187040 Cardamine hirsuta HOM05D001235 ORTHO05D005684 2.7e-09 67.0 126 32.5
Hma1.2p1_0362F.1_g136090 Hydrangea macrophylla HOM05D003809 ORTHO05D003935 2.7e-09 67.0 127 26.0
MD04G1150500 Malus domestica HOM05D003809 ORTHO05D003935 2.7e-09 67.0 77 33.8
Cre09.g407501 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 3.6e-09 66.6 83 36.1
Duzib106G1511 Durio zibethinus HOM05D003809 ORTHO05D003935 3.6e-09 66.6 97 30.9
MBI05_g34490_MAGBIO Magnolia biondii HOM05D003809 ORTHO05D003935 3.6e-09 66.6 107 28.0
Psat7g246040 Pisum sativum HOM05D003809 ORTHO05D003935 3.6e-09 66.6 152 25.7
TWI74G0880 Tripterygium wilfordii HOM05D003809 ORTHO05D003935 3.6e-09 66.6 77 29.9
unitig_37.g12663 Utricularia gibba HOM05D003809 ORTHO05D003935 3.6e-09 66.6 79 32.9
Lalb_Chr19g0124721 Lupinus albus HOM05D003809 ORTHO05D003935 4.6e-09 66.2 103 28.2
Nitab4.5_0008420g0020 Nicotiana tabacum HOM05D003809 ORTHO05D003935 4.6e-09 66.2 168 22.6
Actinidia20726 Actinidia chinensis HOM05D003809 ORTHO05D003935 6.1e-09 65.9 97 32.0
AL6G10910 Arabidopsis lyrata HOM05D003809 ORTHO05D003935 6.1e-09 65.9 141 29.1
CANSAT35G1529 Cannabis sativa HOM05D003809 ORTHO05D003935 6.1e-09 65.9 112 26.8
Carub.0006s0062 Capsella rubella HOM05D003809 ORTHO05D003935 6.1e-09 65.9 100 32.0
Lj2A76T85 Lonicera japonica HOM05D003809 ORTHO05D003935 6.1e-09 65.9 172 26.7
Potri.016G114500 Populus trichocarpa HOM05D003809 ORTHO05D003935 6.1e-09 65.9 78 34.6
Cre09.g394473 Chlamydomonas reinhardtii HOM05D020634 ORTHO05D003935 7.9e-09 65.5 133 35.3
MD12G1164600 Malus domestica HOM05D003809 ORTHO05D003935 7.9e-09 65.5 77 32.5
Prupe.6G058700 Prunus persica HOM05D003809 ORTHO05D003935 7.9e-09 65.5 100 25.0
AT5G01260 Arabidopsis thaliana HOM05D003809 ORTHO05D003935 1.0e-08 65.1 88 35.2
CSS0024242 Camellia sinensis var. sinensis HOM05D003809 ORTHO05D003935 1.0e-08 65.1 85 32.9
Cfa017221 Carpinus fangiana HOM05D003809 ORTHO05D003935 1.0e-08 65.1 124 22.6
Cfa017222 Carpinus fangiana HOM05D003809 ORTHO05D003935 1.0e-08 65.1 124 22.6
Eucgr.K02988 Eucalyptus grandis HOM05D003809 ORTHO05D003935 1.0e-08 65.1 107 26.2
Rhsim13G0070300 Rhododendron simsii HOM05D003809 ORTHO05D003935 1.0e-08 65.1 98 28.6
Manes.08G091100 Manihot esculenta HOM05D003809 ORTHO05D003935 1.3e-08 64.7 94 28.7
Phvul.008G105500 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 1.3e-08 64.7 140 25.7
Phvul.010G002900 Phaseolus vulgaris HOM05D003809 ORTHO05D003935 1.3e-08 64.7 118 30.5
Sc19g0007550 Simmondsia chinensis HOM05D001235 ORTHO05D005684 1.3e-08 64.7 88 36.4
THA.LOC104818773 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 1.3e-08 64.7 120 33.3
Lj3A954G70 Lonicera japonica HOM05D003809 ORTHO05D003935 1.8e-08 64.3 111 26.1
Nitab4.5_0000335g0110 Nicotiana tabacum HOM05D003809 ORTHO05D003935 1.8e-08 64.3 193 23.8
Prupe.6G275300 Prunus persica HOM05D003809 ORTHO05D003935 1.8e-08 64.3 77 32.5
Sp2g21450 Schrenkiella parvula HOM05D001235 ORTHO05D005684 1.8e-08 64.3 88 34.1
Sc06g0006210 Simmondsia chinensis HOM05D003809 ORTHO05D003935 1.8e-08 64.3 93 26.9
Ca_20297_v3 Cicer arietinum L. HOM05D003809 ORTHO05D003935 3.0e-08 63.5 143 25.2
HanXRQChr01g0007011 Helianthus annuus HOM05D003809 ORTHO05D003935 3.0e-08 63.5 105 26.7
Lalb_Chr01g0022961 Lupinus albus HOM05D003809 ORTHO05D003935 3.0e-08 63.5 184 24.5
HPP92_019882 Vanilla planifolia HOM05D003809 ORTHO05D003935 3.0e-08 63.5 133 25.6
Atru.chr8.2220 Acer truncatum HOM05D003809 ORTHO05D003935 3.9e-08 63.2 186 25.3
Dinv14451 Davidia involucrata HOM05D003809 ORTHO05D003935 3.9e-08 63.2 168 21.4
Lsat_1_v5_gn_5_155280 Lactuca sativa HOM05D003809 ORTHO05D003935 3.9e-08 63.2 196 24.5
FvH4_3g38430 Fragaria vesca HOM05D003809 ORTHO05D003935 5.1e-08 62.8 85 27.1
Manes.09G104500 Manihot esculenta HOM05D003809 ORTHO05D003935 5.1e-08 62.8 100 28.0
MCO03G441 Micromonas commoda HOM05D022748 ORTHO05D003935 5.1e-08 62.8 82 35.4
Nn2g11447 Nelumbo nucifera HOM05D003809 ORTHO05D003935 5.1e-08 62.8 147 24.5
PRCOL_00004061 Prasinoderma coloniale HOM05D003809 ORTHO05D003935 5.1e-08 62.8 108 29.6
THA.LOC104816652 Tarenaya hassleriana HOM05D003809 ORTHO05D003935 5.1e-08 62.8 135 28.1
THA.LOC104822294 Tarenaya hassleriana HOM05D001235 ORTHO05D005684 5.1e-08 62.8 83 34.9
GSVIVG01033976001 Vitis vinifera HOM05D003809 ORTHO05D003935 5.1e-08 62.8 67 34.3
Aqoxy4G02610 Aquilegia oxysepala HOM05D003809 ORTHO05D003935 6.7e-08 62.4 118 28.8
COL.COLO4_14553 Corchorus olitorius HOM05D003809 ORTHO05D003935 6.7e-08 62.4 186 23.1
Oeu055170.1 Olea europaea HOM05D003809 ORTHO05D003935 6.7e-08 62.4 170 25.9
Sabra09G0032300 Salix brachista HOM05D000001 ORTHO05D000003 6.7e-08 62.4 94 28.7
Thecc.05G018100 Theobroma cacao HOM05D003809 ORTHO05D003935 6.7e-08 62.4 181 23.8
CARHR211600 Cardamine hirsuta HOM05D003809 ORTHO05D003935 8.7e-08 62.0 99 29.3
Thhalv10013736m.g Eutrema salsugineum HOM05D003809 ORTHO05D003935 8.7e-08 62.0 104 30.8
SMO358G0668 Selaginella moellendorffii HOM05D003809 ORTHO05D003935 1.1e-07 61.6 143 30.1
TAR369G0780 Trochodendron aralioides HOM05D003809 ORTHO05D003935 1.1e-07 61.6 84 31.0
TAR369G1072 Trochodendron aralioides HOM05D003809 ORTHO05D003935 1.1e-07 61.6 84 31.0
AL6G38320 Arabidopsis lyrata HOM05D001235 ORTHO05D005684 1.5e-07 61.2 88 31.8
CiPaw.09G207900 Carya illinoinensis HOM05D003809 ORTHO05D003935 1.5e-07 61.2 103 27.2
Cre17.g719900 Chlamydomonas reinhardtii HOM05D001235 ORTHO05D005684 1.9e-07 60.8 87 31.0
ECA246G4062 Erigeron canadensis HOM05D000041 ORTHO05D000452 1.9e-07 60.8 99 24.2
FAN16G0765 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-07 60.8 85 25.9
FAN21G3156 Fragaria x ananassa HOM05D003809 ORTHO05D003935 1.9e-07 60.8 85 25.9
FAN25G1218 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.9e-07 60.8 85 25.9
Nn2g13682 Nelumbo nucifera HOM05D003809 ORTHO05D003935 1.9e-07 60.8 97 25.8
Thhalv10003634m.g Eutrema salsugineum HOM05D001235 ORTHO05D005684 2.5e-07 60.5 88 31.8
Lalb_Chr03g0043131 Lupinus albus HOM05D003809 ORTHO05D003935 2.5e-07 60.5 139 27.3
BraA03t09429Z Brassica rapa HOM05D003809 ORTHO05D003935 3.3e-07 60.1 89 30.3
PGR142G1880 Punica granatum HOM05D001235 ORTHO05D005684 3.3e-07 60.1 84 32.1
Cre02.g091750 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 4.3e-07 59.7 137 27.7
FAN11G1208 Fragaria x ananassa HOM05D003809 ORTHO05D003935 4.3e-07 59.7 85 25.9
MCO13G353 Micromonas commoda HOM05D003809 ORTHO05D003935 4.3e-07 59.7 88 31.8
MCO14G387 Micromonas commoda HOM05D003809 ORTHO05D003935 5.7e-07 59.3 235 27.2
CAN.G681.26 Capsicum annuum HOM05D001235 ORTHO05D005684 7.4e-07 58.9 151 28.5
Cre09.g394547 Chlamydomonas reinhardtii HOM05D020634 ORTHO05D003935 7.4e-07 58.9 93 32.3
A03p00380 Brassica napus HOM05D003809 ORTHO05D003935 9.7e-07 58.5 89 29.2
Carub.0006s2413 Capsella rubella HOM05D001235 ORTHO05D005684 1.3e-06 58.2 88 30.7
Cpa.g.sc163.14 Carica papaya HOM05D003809 ORTHO05D003935 1.3e-06 58.2 67 28.4
Ciclev10011409m.g Citrus clementina HOM05D003809 ORTHO05D003935 1.3e-06 58.2 135 24.4
Sp6g40590 Schrenkiella parvula HOM05D003809 ORTHO05D003935 1.3e-06 58.2 99 28.3
Cre06.g269601 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 1.6e-06 57.8 58 39.7
C03p00540 Brassica napus HOM05D003809 ORTHO05D003935 2.2e-06 57.4 82 29.3
Cre03.g158050 Chlamydomonas reinhardtii HOM05D000808 ORTHO05D003935 2.2e-06 57.4 127 26.8
PGR004G1101 Punica granatum HOM05D003809 ORTHO05D003935 2.2e-06 57.4 78 26.9
BolC3t12620H Brassica oleracea HOM05D003809 ORTHO05D003935 2.8e-06 57.0 82 29.3
Cre17.g703000 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 2.8e-06 57.0 64 40.6
CDE04G0849 Ceratophyllum demersum HOM05D001235 ORTHO05D005684 3.7e-06 56.6 95 30.5
DCAR_018710 Daucus carota HOM05D003809 ORTHO05D003935 3.7e-06 56.6 148 24.3
Cre10.g450500 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 6.3e-06 55.8 149 27.5
Hund04870 Selenicereus undatus HOM05D003809 ORTHO05D003935 6.3e-06 55.8 189 19.0
Cre12.g551200 Chlamydomonas reinhardtii HOM05D003809 ORTHO05D003935 8.2e-06 55.5 203 28.1
Dinv28631 Davidia involucrata HOM05D003809 ORTHO05D003935 8.2e-06 55.5 178 21.3


User provided reference genes

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